Wall clock time and date at job start Tue Mar 31 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34777 * 116.99681 * 2 1 4 4 O 1.21540 * 120.00492 * 0.02562 * 3 2 1 5 5 C 1.47090 * 119.99728 * 180.02562 * 3 2 1 6 6 C 1.38186 * 126.46084 * 0.30484 * 5 3 2 7 7 N 1.34140 * 107.52767 * 180.16049 * 6 5 3 8 8 C 1.46506 * 125.66493 * 179.84704 * 7 6 5 9 9 N 1.39918 * 108.67145 * 359.57963 * 7 6 5 10 10 C 1.30901 * 108.88376 * 0.26773 * 9 7 6 11 11 N 1.39763 * 126.08231 * 179.97438 * 10 9 7 12 12 C 1.34770 * 119.99688 * 0.02562 * 11 10 9 13 13 O 1.21286 * 120.00516 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99933 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47352 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.47353 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99896 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99721 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00257 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46756 * 90.00224 * 20 18 16 22 22 H 1.48503 * 109.47277 * 209.99996 * 20 18 16 23 23 H 1.48497 * 109.47088 * 330.00018 * 20 18 16 24 24 H 1.08994 * 109.47222 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46690 * 299.99597 * 1 2 3 26 26 H 1.08997 * 109.47390 * 59.99080 * 1 2 3 27 27 H 1.07994 * 126.24018 * 0.02562 * 6 5 3 28 28 H 1.09001 * 109.47060 * 269.71918 * 8 7 6 29 29 H 1.09004 * 109.47073 * 29.71407 * 8 7 6 30 30 H 1.09000 * 109.47212 * 149.71490 * 8 7 6 31 31 H 0.96995 * 119.99707 * 180.02562 * 11 10 9 32 32 H 1.09004 * 109.46698 * 299.99319 * 14 12 11 33 33 H 1.09000 * 109.47145 * 59.99609 * 14 12 11 34 34 H 1.09002 * 109.47080 * 300.00210 * 15 14 12 35 35 H 1.09005 * 109.47174 * 59.99375 * 15 14 12 36 36 H 0.97001 * 119.99623 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4019 2.2202 0.0005 5 6 3.5327 1.2779 -0.0006 6 6 4.4109 0.2110 -0.0070 7 7 5.6552 0.7121 -0.0015 8 6 6.8922 -0.0730 -0.0023 9 7 5.5757 2.1090 -0.0012 10 6 4.3150 2.4615 -0.0006 11 7 3.8265 3.7710 0.0005 12 6 4.6845 4.8102 0.0003 13 8 5.8806 4.6093 -0.0002 14 6 4.1578 6.2222 0.0020 15 6 5.3310 7.2042 0.0022 16 6 4.8043 8.6162 0.0032 17 1 3.7393 8.7953 0.0041 18 6 5.6821 9.6794 0.0040 19 7 5.2224 10.9116 0.0055 20 14 7.5243 9.3697 0.0046 21 1 8.0129 9.2884 -1.3954 22 1 8.2132 10.4831 0.7054 23 1 7.8112 8.0917 0.7041 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 4.1442 -0.8354 -0.0130 28 1 7.1991 -0.2684 1.0252 29 1 6.7220 -1.0188 -0.5167 30 1 7.6758 0.4840 -0.5159 31 1 2.8699 3.9317 0.0012 32 1 3.5485 6.3837 -0.8873 33 1 3.5503 6.3823 0.8927 34 1 5.9401 7.0426 0.8916 35 1 5.9390 7.0442 -0.8884 36 1 5.8400 11.6596 0.0057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121259326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:45 Heat of formation + Delta-G solvation = -40.360898 kcal Electronic energy + Delta-G solvation = -21353.643084 eV Core-core repulsion = 17840.278168 eV Total energy + Delta-G solvation = -3513.364917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.72788 -40.06320 -39.22858 -36.55355 -34.95970 -33.47524 -32.56818 -31.28156 -30.78790 -28.05448 -27.18781 -25.94310 -23.25830 -22.46062 -21.08095 -20.22027 -19.34870 -18.10242 -17.34738 -17.11275 -16.59384 -16.44563 -15.86842 -15.82970 -15.60480 -15.00760 -14.09311 -13.99384 -13.61577 -13.48059 -13.33687 -13.13738 -13.02935 -12.54372 -12.46898 -12.27719 -11.41852 -11.05759 -10.99768 -10.98710 -10.77803 -10.60627 -10.15527 -10.02190 -9.76008 -9.29705 -9.15693 -9.15475 -8.48874 -8.44040 -5.99843 -3.98600 1.09632 1.93448 1.98214 2.56571 2.84952 3.27871 3.39461 3.40777 3.47037 3.58483 4.13035 4.40843 4.53926 4.78063 4.85122 4.88486 4.97209 5.02557 5.10298 5.16467 5.29962 5.32746 5.35503 5.68293 6.07581 6.10354 6.20126 6.52319 6.67849 6.72714 7.12480 7.37774 7.44860 7.65872 7.80610 7.85735 8.49220 8.58452 9.03351 9.62946 11.12939 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.003866 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.789267 B = 7240.538177 C = 8490.274851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.548 3.452 4 O -0.519 6.519 5 C -0.310 4.310 6 C 0.143 3.857 7 N -0.354 5.354 8 C 0.098 3.902 9 N -0.281 5.281 10 C 0.364 3.636 11 N -0.642 5.642 12 C 0.502 3.498 13 O -0.490 6.490 14 C -0.118 4.118 15 C 0.001 3.999 16 C -0.524 4.524 17 H 0.074 0.926 18 C 0.069 3.931 19 N -0.903 5.903 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.194 0.806 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.429 0.571 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.025 0.975 35 H 0.020 0.980 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 -29.374 -0.059 29.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.277 6.277 3 C 0.394 3.606 4 O -0.409 6.409 5 C -0.325 4.325 6 C -0.012 4.012 7 N -0.131 5.131 8 C -0.043 4.043 9 N -0.110 5.110 10 C 0.105 3.895 11 N -0.296 5.296 12 C 0.290 3.710 13 O -0.359 6.359 14 C -0.158 4.158 15 C -0.037 4.037 16 C -0.562 4.562 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.185 1.185 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.210 0.790 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.269 0.731 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.211 -28.572 -0.052 28.752 hybrid contribution -0.600 -0.313 -0.018 0.677 sum -3.811 -28.885 -0.070 29.135 Atomic orbital electron populations 1.23249 0.76012 1.03487 1.02808 1.86513 1.23498 1.32708 1.84957 1.19868 0.87188 0.81387 0.72178 1.90797 1.66364 1.35859 1.47850 1.18967 0.90339 0.92118 1.31099 1.23144 0.84037 0.99669 0.94382 1.48390 1.06019 1.05236 1.53457 1.22040 0.83645 0.94445 1.04162 1.78168 1.15221 0.87380 1.30255 1.19280 0.89855 0.85783 0.94600 1.43720 1.12247 1.00655 1.72937 1.22023 0.86745 0.87555 0.74637 1.90742 1.15342 1.85235 1.44574 1.21709 1.02330 0.87720 1.04020 1.19401 0.92845 0.93597 0.97821 1.21094 0.95330 0.88468 1.51324 0.90778 1.24963 0.98947 0.94961 0.94338 1.69915 1.35032 0.98187 1.51075 0.86799 0.85738 0.78309 0.78740 1.20241 1.21451 1.18509 0.88202 0.91778 0.91784 0.78959 0.89928 0.88881 0.88445 0.73080 0.88990 0.88965 0.95668 0.96124 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.33 16 2 O -0.36 -3.48 10.39 -40.70 -0.42 -3.90 16 3 C 0.55 6.85 7.95 34.32 0.27 7.12 16 4 O -0.52 -7.62 14.99 -19.30 -0.29 -7.91 16 5 C -0.31 -3.99 6.14 -104.93 -0.64 -4.63 16 6 C 0.14 1.32 11.32 -16.56 -0.19 1.13 16 7 N -0.35 -3.92 3.97 -67.58 -0.27 -4.19 16 8 C 0.10 0.58 11.44 59.85 0.68 1.26 16 9 N -0.28 -4.74 10.72 31.62 0.34 -4.40 16 10 C 0.36 5.98 7.79 -154.47 -1.20 4.78 16 11 N -0.64 -10.95 5.42 -10.92 -0.06 -11.01 16 12 C 0.50 10.12 7.79 -10.99 -0.09 10.03 16 13 O -0.49 -11.58 14.70 5.55 0.08 -11.50 16 14 C -0.12 -2.41 5.64 -27.88 -0.16 -2.57 16 15 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 16 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 17 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -28.39 13.96 55.43 0.77 -27.61 16 20 Si 0.88 22.96 27.47 -169.99 -4.67 18.29 16 21 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 24 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.43 6.51 6.95 -40.82 -0.28 6.23 16 32 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 33 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.02 0.67 7.15 -51.93 -0.37 0.30 16 35 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -38.94 320.58 -4.90 -43.84 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.44 Total: -1.22 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -0.78 Total: 4.77 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.78 Total: -47.21 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.63 Total: -23.30 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.67 Total: 18.29 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -38.94 -4.90 -43.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121259326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.478 kcal (2) G-P(sol) polarization free energy of solvation -38.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds