Wall clock time and date at job start Tue Mar 31 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46690 * 2 1 4 4 C 1.52998 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47253 * 180.02562 * 4 3 2 6 6 C 1.36944 * 119.99972 * 276.81446 * 5 4 3 7 7 H 1.07998 * 119.99129 * 38.95994 * 6 5 4 8 8 C 1.38811 * 120.00443 * 218.95610 * 6 5 4 9 9 N 1.31620 * 119.99645 * 23.97439 * 8 6 5 10 10 Si 1.86798 * 119.99999 * 203.97750 * 8 6 5 11 11 H 1.48500 * 109.47242 * 89.99944 * 10 8 6 12 12 H 1.48496 * 109.47068 * 209.99821 * 10 8 6 13 13 H 1.48502 * 109.46819 * 329.99922 * 10 8 6 14 14 C 1.46497 * 120.00211 * 96.82100 * 5 4 3 15 15 C 1.50695 * 109.47051 * 274.24058 * 14 5 4 16 16 C 1.38231 * 120.01100 * 97.27049 * 15 14 5 17 17 C 1.50705 * 119.98993 * 359.97438 * 16 15 14 18 18 C 1.38218 * 120.01761 * 179.97438 * 16 15 14 19 19 C 1.38262 * 120.02766 * 0.02562 * 18 16 15 20 20 C 1.38196 * 120.01159 * 0.23779 * 19 18 16 21 21 C 1.38334 * 120.00795 * 277.24595 * 15 14 5 22 22 Cl 1.73606 * 120.01131 * 0.04682 * 21 15 14 23 23 H 1.08994 * 109.46930 * 60.00235 * 1 2 3 24 24 H 1.08998 * 109.46429 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46830 * 299.99840 * 1 2 3 26 26 H 1.08994 * 109.47348 * 239.99797 * 2 1 3 27 27 H 1.08998 * 109.47252 * 119.99364 * 2 1 3 28 28 H 1.08998 * 109.47743 * 60.00169 * 3 2 1 29 29 H 1.09004 * 109.47391 * 299.99442 * 3 2 1 30 30 H 1.09003 * 109.47508 * 59.99432 * 4 3 2 31 31 H 1.09009 * 109.47100 * 299.99870 * 4 3 2 32 32 H 0.97005 * 119.99418 * 184.97645 * 9 8 6 33 33 H 1.09005 * 109.47442 * 154.23801 * 14 5 4 34 34 H 1.09003 * 109.47155 * 34.24042 * 14 5 4 35 35 H 1.09005 * 109.47056 * 268.74465 * 17 16 15 36 36 H 1.09000 * 109.46925 * 28.74664 * 17 16 15 37 37 H 1.09001 * 109.47298 * 148.75067 * 17 16 15 38 38 H 1.08005 * 119.98778 * 179.97438 * 18 16 15 39 39 H 1.08000 * 119.99517 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.00656 * 179.74341 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.1532 3.5171 -1.1772 7 1 3.3893 3.4056 -1.9325 8 6 5.2312 4.3629 -1.3997 9 7 6.3625 4.1704 -0.7552 10 14 5.0760 5.7742 -2.6136 11 1 4.5905 6.9855 -1.9049 12 1 6.4025 6.0537 -3.2198 13 1 4.1117 5.4052 -3.6809 14 6 4.4449 3.4636 1.2599 15 6 3.2267 4.0638 1.9131 16 6 2.5605 3.3683 2.9047 17 6 3.0523 2.0094 3.3321 18 6 1.4435 3.9190 3.5043 19 6 0.9914 5.1654 3.1124 20 6 1.6534 5.8594 2.1174 21 6 2.7752 5.3112 1.5209 22 17 3.6110 6.1850 0.2752 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9564 -0.8900 30 1 3.9330 0.9289 -0.8908 31 1 3.9337 0.9287 0.8892 32 1 7.0914 4.8026 -0.8556 33 1 5.1741 4.2488 1.0600 34 1 4.8847 2.7202 1.9248 35 1 2.5560 1.2406 2.7399 36 1 4.1296 1.9479 3.1781 37 1 2.8268 1.8568 4.3876 38 1 0.9231 3.3750 4.2788 39 1 0.1183 5.5950 3.5810 40 1 1.2977 6.8311 1.8084 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138722011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:44 Heat of formation + Delta-G solvation = 20.682130 kcal Electronic energy + Delta-G solvation = -21061.832670 eV Core-core repulsion = 18095.364286 eV Total energy + Delta-G solvation = -2966.468384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.09120 -36.18283 -35.49033 -34.06051 -32.40718 -31.25661 -30.46262 -27.96109 -26.53386 -25.46925 -23.79624 -21.73497 -21.02249 -20.31015 -19.82390 -16.80405 -15.88120 -15.42167 -14.98281 -14.94931 -14.28828 -13.83475 -13.58923 -13.44039 -13.02628 -12.90390 -12.61136 -12.33919 -12.12071 -11.89133 -11.80682 -11.60533 -11.11294 -11.04745 -10.70979 -10.66304 -10.57919 -10.43476 -10.27361 -10.22468 -10.07480 -9.77276 -9.65070 -9.50780 -8.29973 -8.04396 -7.87847 -6.56863 -5.75680 -3.30619 1.79054 1.88824 3.03044 3.34096 3.46412 3.60905 4.19004 4.53812 5.26369 5.28547 5.29938 5.39427 5.40073 5.55245 5.61299 5.69231 5.75630 5.81900 5.99116 6.01006 6.06458 6.13676 6.17070 6.33534 6.39428 6.41270 6.49986 6.53174 6.59797 6.66830 6.70839 6.83452 6.99344 7.03375 7.19838 7.28752 7.43058 7.59513 7.88387 8.55437 9.21484 9.84582 10.43132 11.23044 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.009113 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.648059 B = 3071.630543 C = 4134.235832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.150 3.850 5 N -0.568 5.568 6 C -0.250 4.250 7 H 0.055 0.945 8 C 0.035 3.965 9 N -0.876 5.876 10 Si 0.867 3.133 11 H -0.277 1.277 12 H -0.292 1.292 13 H -0.276 1.276 14 C 0.174 3.826 15 C -0.068 4.068 16 C -0.079 4.079 17 C -0.115 4.115 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.026 4.026 22 Cl -0.041 7.041 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.253 0.747 33 H 0.102 0.898 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 -2.417 7.503 11.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.024 3.976 5 N -0.286 5.286 6 C -0.379 4.379 7 H 0.073 0.927 8 C -0.166 4.166 9 N -0.517 5.517 10 Si 0.698 3.302 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.201 1.201 14 C 0.048 3.952 15 C -0.072 4.072 16 C -0.080 4.080 17 C -0.171 4.171 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.053 4.053 22 Cl -0.012 7.012 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.160 -2.342 7.281 11.184 hybrid contribution -0.320 1.108 -0.698 1.348 sum -8.480 -1.234 6.583 10.806 Atomic orbital electron populations 1.21756 0.96848 1.00465 1.01505 1.21497 0.94954 0.98445 1.01091 1.22254 0.99611 0.94332 1.01783 1.20905 0.91124 0.86876 0.98707 1.43597 1.75296 1.07859 1.01890 1.18815 1.02170 1.22518 0.94435 0.92698 1.24932 0.93698 1.00593 0.97331 1.70126 1.01979 1.34358 1.45228 0.86798 0.77016 0.84359 0.82075 1.20467 1.21861 1.20077 1.20059 0.91178 0.97868 0.86114 1.21038 1.00540 0.91906 0.93739 1.19664 0.95447 0.96502 0.96433 1.20899 1.02264 0.93758 1.00173 1.20912 0.97050 0.95930 1.00816 1.20801 1.00195 0.95517 0.98301 1.20947 0.95580 1.00374 0.97873 1.21088 0.95490 0.94512 0.94237 1.98443 1.76990 1.75538 1.50216 0.93090 0.93633 0.93187 0.92577 0.92825 0.92487 0.92651 0.93842 0.94745 0.93731 0.88045 0.94174 0.91095 0.90838 0.92542 0.86865 0.86586 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.77 5.93 -26.73 -0.16 -1.93 16 3 C -0.14 -2.52 5.24 -26.73 -0.14 -2.66 16 4 C 0.15 3.06 5.72 -4.04 -0.02 3.03 16 5 N -0.57 -13.45 2.41 -174.61 -0.42 -13.87 16 6 C -0.25 -6.58 8.22 -15.06 -0.12 -6.70 16 7 H 0.06 1.51 7.94 -52.49 -0.42 1.09 16 8 C 0.04 0.95 3.42 -17.43 -0.06 0.89 16 9 N -0.88 -24.38 11.81 55.49 0.66 -23.73 16 10 Si 0.87 21.33 27.41 -169.99 -4.66 16.67 16 11 H -0.28 -6.61 6.03 56.52 0.34 -6.27 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.17 3.92 4.68 -5.20 -0.02 3.90 16 15 C -0.07 -1.38 5.23 -104.59 -0.55 -1.92 16 16 C -0.08 -1.36 4.76 -104.63 -0.50 -1.86 16 17 C -0.11 -1.68 9.17 36.01 0.33 -1.35 16 18 C -0.13 -1.97 9.71 -39.58 -0.38 -2.36 16 19 C -0.13 -1.97 10.05 -39.59 -0.40 -2.37 16 20 C -0.13 -2.24 9.83 -39.55 -0.39 -2.63 16 21 C -0.03 -0.53 6.32 -39.50 -0.25 -0.78 16 22 Cl -0.04 -0.91 20.94 -51.86 -1.09 -1.99 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.06 5.87 -51.93 -0.30 0.76 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.04 0.93 8.10 -51.93 -0.42 0.51 16 31 H 0.03 0.65 7.26 -51.92 -0.38 0.27 16 32 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 33 H 0.10 2.59 4.88 -51.93 -0.25 2.34 16 34 H 0.04 0.86 5.45 -51.93 -0.28 0.58 16 35 H 0.07 1.02 6.91 -51.93 -0.36 0.67 16 36 H 0.07 1.13 5.83 -51.93 -0.30 0.83 16 37 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 39 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -27.61 322.67 -9.08 -36.69 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.14 Total: -0.34 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.30 Total: -18.29 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.23 Total: -37.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.66 Total: 16.67 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.09 Total: -1.99 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.61 -9.08 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138722011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.373 kcal (2) G-P(sol) polarization free energy of solvation -27.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds