Wall clock time and date at job start Tue Mar 31 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39349 * 120.20905 * 172.68973 * 3 2 1 5 5 C 1.38363 * 120.49010 * 179.97438 * 4 3 2 6 6 C 1.37868 * 120.58566 * 0.02562 * 5 4 3 7 7 C 1.39603 * 119.99704 * 359.75919 * 6 5 4 8 8 C 1.46562 * 133.94718 * 179.60354 * 7 6 5 9 9 C 1.50702 * 126.54343 * 0.67733 * 8 7 6 10 10 N 1.46902 * 109.47215 * 79.71160 * 9 8 7 11 11 C 1.47961 * 111.00005 * 169.99576 * 10 9 8 12 12 C 1.53934 * 86.17939 * 137.58072 * 11 10 9 13 13 C 1.50703 * 113.73399 * 221.81705 * 12 11 10 14 14 H 1.07999 * 119.99920 * 358.09577 * 13 12 11 15 15 C 1.37877 * 119.99669 * 178.10223 * 13 12 11 16 16 N 1.31510 * 120.00506 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99624 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47263 * 89.99888 * 17 15 13 19 19 H 1.48497 * 109.47123 * 209.99934 * 17 15 13 20 20 H 1.48502 * 109.47383 * 330.00011 * 17 15 13 21 21 C 1.48296 * 111.00409 * 269.34877 * 10 9 8 22 22 C 1.34220 * 106.90705 * 180.41002 * 8 7 6 23 23 N 1.36874 * 109.87700 * 0.24545 * 22 8 7 24 24 H 0.96999 * 125.01856 * 180.02562 * 23 22 8 25 25 C 1.37210 * 109.95396 * 359.97438 * 23 22 8 26 26 H 1.08005 * 119.76079 * 0.02743 * 4 3 2 27 27 H 1.08004 * 119.70520 * 180.02562 * 5 4 3 28 28 H 1.08004 * 120.00396 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47251 * 319.70736 * 9 8 7 30 30 H 1.09004 * 109.46551 * 199.71102 * 9 8 7 31 31 H 1.09007 * 113.75652 * 23.26342 * 11 10 9 32 32 H 1.08992 * 113.86038 * 251.91266 * 11 10 9 33 33 H 1.09002 * 113.73279 * 90.64057 * 12 11 10 34 34 H 0.96995 * 120.00309 * 180.02562 * 16 15 13 35 35 H 1.09001 * 113.86054 * 108.14174 * 21 10 9 36 36 H 1.09000 * 113.76062 * 336.68481 * 21 10 9 37 37 H 1.08000 * 125.05855 * 180.23916 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 1.1954 -0.1532 5 6 4.6523 1.2028 -0.1536 6 6 5.3601 0.0294 -0.0030 7 6 4.6809 -1.1798 0.1567 8 6 5.1080 -2.5712 0.3292 9 6 6.5277 -3.0727 0.3940 10 7 7.0691 -2.8375 1.7392 11 6 8.3672 -3.5252 1.9160 12 6 8.8366 -2.2381 2.6180 13 6 10.2340 -1.8173 2.2421 14 1 10.8158 -2.4225 1.5627 15 6 10.7696 -0.6598 2.7657 16 7 10.0614 0.0769 3.5935 17 14 12.5021 -0.1385 2.3003 18 1 12.4518 0.7254 1.0935 19 1 13.1106 0.6168 3.4248 20 1 13.3211 -1.3434 2.0127 21 6 7.7362 -1.5155 1.8201 22 6 3.9933 -3.3127 0.4243 23 7 2.8898 -2.5095 0.3212 24 1 1.9711 -2.8180 0.3612 25 6 3.2754 -1.2033 0.1542 26 1 2.7277 2.1227 -0.2718 27 1 5.1824 2.1362 -0.2729 28 1 6.4400 0.0461 -0.0042 29 1 7.1343 -2.5420 -0.3397 30 1 6.5460 -4.1406 0.1765 31 1 8.8870 -3.7295 0.9799 32 1 8.3205 -4.3925 2.5745 33 1 8.6685 -2.2395 3.6949 34 1 10.4381 0.8914 3.9615 35 1 7.1840 -0.7779 2.4024 36 1 8.0718 -1.1333 0.8561 37 1 3.9704 -4.3837 0.5617 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139701414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:57 Heat of formation + Delta-G solvation = 120.866651 kcal Electronic energy + Delta-G solvation = -20663.714437 eV Core-core repulsion = 17600.482886 eV Total energy + Delta-G solvation = -3063.231551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.39701 -38.57498 -37.42306 -36.25064 -33.18480 -32.25603 -30.47484 -29.45862 -27.99961 -25.40232 -24.93572 -23.91481 -22.37606 -21.88935 -20.27284 -18.56988 -18.27014 -17.28324 -16.51221 -16.05207 -15.14472 -15.05406 -14.66388 -14.51611 -14.36900 -13.90183 -13.76055 -13.42662 -13.34185 -12.91762 -12.72174 -12.24024 -11.94829 -11.79595 -11.57692 -11.49176 -11.43718 -10.99004 -10.92064 -10.57143 -10.24078 -9.79236 -9.65611 -9.12671 -8.98422 -8.44878 -8.29765 -7.85535 -7.62798 -6.04486 -4.09163 0.63516 1.55127 2.47078 2.51740 3.01423 3.09653 3.28187 3.36002 3.38604 3.80806 3.92353 4.40593 4.67287 4.85340 4.94244 5.04917 5.18399 5.26477 5.34615 5.49193 5.52951 5.78690 5.82195 5.95353 6.04276 6.18783 6.30132 6.39479 6.49789 6.50990 6.63074 6.67342 6.74135 6.84066 7.04314 7.18771 7.26490 7.34476 7.44162 7.74049 7.92285 8.10884 8.37620 8.93398 9.55794 11.04656 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.004133 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.428434 B = 6772.726529 C = 7612.740743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.261 3.739 3 C -0.062 4.062 4 C -0.038 4.038 5 C -0.159 4.159 6 C -0.020 4.020 7 C -0.098 4.098 8 C -0.126 4.126 9 C 0.089 3.911 10 N -0.485 5.485 11 C -0.004 4.004 12 C 0.038 3.962 13 C -0.519 4.519 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.018 3.982 22 C 0.049 3.951 23 N -0.594 5.594 24 H 0.414 0.586 25 C 0.139 3.861 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.982 -2.301 -8.446 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.053 4.053 3 C -0.069 4.069 4 C -0.060 4.060 5 C -0.178 4.178 6 C -0.039 4.039 7 C -0.103 4.103 8 C -0.133 4.133 9 C -0.040 4.040 10 N -0.208 5.208 11 C -0.132 4.132 12 C 0.019 3.981 13 C -0.557 4.557 14 H 0.075 0.925 15 C -0.136 4.136 16 N -0.522 5.522 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.110 4.110 22 C -0.076 4.076 23 N -0.196 5.196 24 H 0.250 0.750 25 C 0.028 3.972 26 H 0.150 0.850 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.392 -2.404 -7.899 15.733 hybrid contribution 1.443 0.401 -0.787 1.692 sum -11.949 -2.003 -8.686 14.908 Atomic orbital electron populations 1.81234 1.12039 1.07296 1.10797 1.25817 0.92709 0.93789 0.92963 1.14874 0.83346 0.92394 1.16326 1.20880 0.94342 0.95189 0.95566 1.20813 0.93070 0.98546 1.05380 1.21028 1.00744 0.90282 0.91825 1.19024 0.90720 0.94086 1.06472 1.20276 0.94978 0.90506 1.07572 1.20942 0.90170 0.99496 0.93406 1.68611 1.21322 1.07645 1.23214 1.24074 0.89615 0.99631 0.99887 1.20307 0.93336 0.88405 0.96071 1.21095 0.99160 1.07651 1.27784 0.92519 1.24994 0.97321 0.96622 0.94614 1.69962 1.36941 1.14685 1.30656 0.86662 0.84949 0.78704 0.78081 1.20661 1.21215 1.19904 1.24143 0.95960 0.91093 0.99837 1.21603 0.84572 0.96535 1.04910 1.41639 1.08788 1.04879 1.64276 0.74965 1.17903 0.93621 0.84201 1.01509 0.84988 0.84788 0.84730 0.93352 0.91198 0.92739 0.91719 0.92463 0.92905 0.91510 0.92859 0.81114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.16 18.54 41.84 0.78 -5.38 16 2 C 0.26 3.27 15.34 -22.47 -0.34 2.93 16 3 C -0.06 -0.75 5.75 -106.71 -0.61 -1.36 16 4 C -0.04 -0.40 9.73 -39.12 -0.38 -0.78 16 5 C -0.16 -1.78 10.00 -39.67 -0.40 -2.18 16 6 C -0.02 -0.27 9.99 -39.21 -0.39 -0.66 16 7 C -0.10 -1.40 6.35 -105.15 -0.67 -2.06 16 8 C -0.13 -1.79 5.88 -102.68 -0.60 -2.40 16 9 C 0.09 1.37 5.33 -4.97 -0.03 1.34 16 10 N -0.49 -9.14 6.15 -239.49 -1.47 -10.62 16 11 C 0.00 -0.07 7.50 -2.76 -0.02 -0.09 16 12 C 0.04 0.91 3.60 -90.84 -0.33 0.58 16 13 C -0.52 -13.57 8.77 -34.44 -0.30 -13.87 16 14 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 15 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -24.71 13.29 55.43 0.74 -23.98 16 17 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.02 0.39 6.90 -2.57 -0.02 0.37 16 22 C 0.05 0.56 11.74 -16.72 -0.20 0.36 16 23 N -0.59 -6.55 6.05 -10.44 -0.06 -6.61 16 24 H 0.41 3.56 8.96 -40.82 -0.37 3.20 16 25 C 0.14 1.79 6.98 -83.73 -0.58 1.21 16 26 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 27 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 28 H 0.13 1.90 6.85 -52.48 -0.36 1.54 16 29 H 0.05 0.76 7.38 -51.93 -0.38 0.38 16 30 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.05 1.04 7.88 -51.92 -0.41 0.63 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.05 1.14 6.80 -51.93 -0.35 0.78 16 37 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -29.50 324.87 -9.49 -38.99 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.37 Total: 2.21 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -4.97 Total: -14.91 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.02 Total: -46.58 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.50 -9.49 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139701414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.858 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds