Wall clock time and date at job start Tue Mar 31 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39349 * 120.20905 * 172.68973 * 3 2 1 5 5 C 1.38363 * 120.49010 * 179.97438 * 4 3 2 6 6 C 1.37868 * 120.58566 * 0.02562 * 5 4 3 7 7 C 1.39603 * 119.99704 * 359.75919 * 6 5 4 8 8 C 1.46562 * 133.94718 * 179.60354 * 7 6 5 9 9 C 1.50702 * 126.54343 * 0.67733 * 8 7 6 10 10 N 1.46902 * 109.47215 * 79.71160 * 9 8 7 11 11 C 1.47961 * 111.00005 * 169.99576 * 10 9 8 12 12 C 1.53934 * 86.17939 * 137.58072 * 11 10 9 13 13 C 1.50703 * 113.73399 * 221.81705 * 12 11 10 14 14 H 1.07999 * 119.99920 * 358.09577 * 13 12 11 15 15 C 1.37877 * 119.99669 * 178.10223 * 13 12 11 16 16 N 1.31510 * 120.00506 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99624 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47263 * 89.99888 * 17 15 13 19 19 H 1.48497 * 109.47123 * 209.99934 * 17 15 13 20 20 H 1.48502 * 109.47383 * 330.00011 * 17 15 13 21 21 C 1.48296 * 111.00409 * 269.34877 * 10 9 8 22 22 C 1.34220 * 106.90705 * 180.41002 * 8 7 6 23 23 N 1.36874 * 109.87700 * 0.24545 * 22 8 7 24 24 H 0.96999 * 125.01856 * 180.02562 * 23 22 8 25 25 C 1.37210 * 109.95396 * 359.97438 * 23 22 8 26 26 H 1.08005 * 119.76079 * 0.02743 * 4 3 2 27 27 H 1.08004 * 119.70520 * 180.02562 * 5 4 3 28 28 H 1.08004 * 120.00396 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47251 * 319.70736 * 9 8 7 30 30 H 1.09004 * 109.46551 * 199.71102 * 9 8 7 31 31 H 1.09007 * 113.75652 * 23.26342 * 11 10 9 32 32 H 1.08992 * 113.86038 * 251.91266 * 11 10 9 33 33 H 1.09002 * 113.73279 * 90.64057 * 12 11 10 34 34 H 0.96995 * 120.00309 * 180.02562 * 16 15 13 35 35 H 1.09001 * 113.86054 * 108.14174 * 21 10 9 36 36 H 1.09000 * 113.76062 * 336.68481 * 21 10 9 37 37 H 1.08000 * 125.05855 * 180.23916 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 1.1954 -0.1532 5 6 4.6523 1.2028 -0.1536 6 6 5.3601 0.0294 -0.0030 7 6 4.6809 -1.1798 0.1567 8 6 5.1080 -2.5712 0.3292 9 6 6.5277 -3.0727 0.3940 10 7 7.0691 -2.8375 1.7392 11 6 8.3672 -3.5252 1.9160 12 6 8.8366 -2.2381 2.6180 13 6 10.2340 -1.8173 2.2421 14 1 10.8158 -2.4225 1.5627 15 6 10.7696 -0.6598 2.7657 16 7 10.0614 0.0769 3.5935 17 14 12.5021 -0.1385 2.3003 18 1 12.4518 0.7254 1.0935 19 1 13.1106 0.6168 3.4248 20 1 13.3211 -1.3434 2.0127 21 6 7.7362 -1.5155 1.8201 22 6 3.9933 -3.3127 0.4243 23 7 2.8898 -2.5095 0.3212 24 1 1.9711 -2.8180 0.3612 25 6 3.2754 -1.2033 0.1542 26 1 2.7277 2.1227 -0.2718 27 1 5.1824 2.1362 -0.2729 28 1 6.4400 0.0461 -0.0042 29 1 7.1343 -2.5420 -0.3397 30 1 6.5460 -4.1406 0.1765 31 1 8.8870 -3.7295 0.9799 32 1 8.3205 -4.3925 2.5745 33 1 8.6685 -2.2395 3.6949 34 1 10.4381 0.8914 3.9615 35 1 7.1840 -0.7779 2.4024 36 1 8.0718 -1.1333 0.8561 37 1 3.9704 -4.3837 0.5617 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139701414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:57 Heat of formation + Delta-G solvation = 103.034710 kcal Electronic energy + Delta-G solvation = -20664.487688 eV Core-core repulsion = 17600.482886 eV Total energy + Delta-G solvation = -3064.004802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.34887 -40.17835 -38.39640 -37.24080 -34.83715 -33.67043 -31.65553 -30.41473 -29.41234 -27.04663 -26.60077 -24.91746 -23.91421 -22.81703 -21.27494 -20.31942 -19.38016 -18.39081 -18.24119 -16.95207 -16.66369 -16.25554 -16.12405 -15.77681 -15.46512 -15.41659 -15.06447 -14.48617 -14.34728 -13.97288 -13.90279 -13.77922 -13.40673 -13.19249 -13.02441 -12.76546 -12.60095 -12.50755 -12.39536 -12.22002 -11.67573 -11.51398 -11.14525 -10.87420 -10.51367 -10.40274 -9.44181 -9.22355 -8.62004 -8.07729 -6.18897 -0.32601 0.62290 1.46218 1.47696 1.50194 1.52202 1.57428 2.08476 2.15256 2.47766 2.81870 2.95593 3.21940 3.52509 3.77282 3.95124 4.03554 4.18365 4.33781 4.45631 4.48710 4.57417 4.64489 4.73557 4.85278 4.88461 4.94942 4.98312 5.05918 5.13761 5.36478 5.38024 5.55949 5.63539 5.69597 5.71513 5.83759 5.94124 6.08353 6.37145 6.38171 6.53398 6.60537 6.90221 7.49288 9.01191 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.004133 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.428434 B = 6772.726529 C = 7612.740743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.281 3.719 3 C -0.064 4.064 4 C -0.030 4.030 5 C -0.153 4.153 6 C -0.043 4.043 7 C -0.119 4.119 8 C -0.168 4.168 9 C 0.094 3.906 10 N -0.483 5.483 11 C 0.012 3.988 12 C 0.016 3.984 13 C -0.531 4.531 14 H 0.058 0.942 15 C 0.017 3.983 16 N -0.920 5.920 17 Si 0.952 3.048 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.267 1.267 21 C 0.038 3.962 22 C 0.074 3.926 23 N -0.585 5.585 24 H 0.427 0.573 25 C 0.128 3.872 26 H 0.162 0.838 27 H 0.155 0.845 28 H 0.118 0.882 29 H 0.040 0.960 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.020 0.980 34 H 0.261 0.739 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.660 -2.874 -9.656 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.033 4.033 3 C -0.071 4.071 4 C -0.051 4.051 5 C -0.172 4.172 6 C -0.063 4.063 7 C -0.124 4.124 8 C -0.175 4.175 9 C -0.034 4.034 10 N -0.205 5.205 11 C -0.117 4.117 12 C -0.003 4.003 13 C -0.569 4.569 14 H 0.077 0.923 15 C -0.183 4.183 16 N -0.559 5.559 17 Si 0.778 3.222 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.192 1.192 21 C -0.091 4.091 22 C -0.052 4.052 23 N -0.188 5.188 24 H 0.266 0.734 25 C 0.016 3.984 26 H 0.180 0.820 27 H 0.173 0.827 28 H 0.136 0.864 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -14.092 -2.991 -9.123 17.052 hybrid contribution 1.603 0.561 -0.409 1.747 sum -12.489 -2.430 -9.533 15.898 Atomic orbital electron populations 1.81261 1.12753 1.08202 1.11848 1.25756 0.92498 0.92937 0.92103 1.14973 0.83002 0.92679 1.16478 1.21208 0.94079 0.95918 0.93939 1.21065 0.93529 0.98556 1.04061 1.21073 1.00223 0.91381 0.93578 1.19237 0.91629 0.94447 1.07111 1.20234 0.94990 0.91123 1.11121 1.20892 0.90806 1.00926 0.90793 1.68536 1.20427 1.05469 1.26116 1.23926 0.89755 0.98135 0.99844 1.20313 0.93409 0.92099 0.94489 1.21444 1.00270 1.07656 1.27506 0.92338 1.25764 1.01100 0.96763 0.94640 1.70092 1.38678 1.15151 1.31957 0.85646 0.80363 0.78421 0.77766 1.19914 1.21287 1.19150 1.23757 0.94929 0.91751 0.98676 1.22062 0.83744 0.97764 1.01613 1.41684 1.09482 1.04279 1.63362 0.73442 1.17992 0.93221 0.85124 1.02041 0.82029 0.82722 0.86413 0.94218 0.88744 0.91740 0.90376 0.96213 0.92998 0.93887 0.93169 0.77737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.35 18.54 19.00 0.35 -12.00 16 2 C 0.28 6.52 15.34 88.33 1.36 7.88 16 3 C -0.06 -1.43 5.75 -21.22 -0.12 -1.55 16 4 C -0.03 -0.58 9.73 22.57 0.22 -0.36 16 5 C -0.15 -3.27 10.00 22.21 0.22 -3.05 16 6 C -0.04 -1.18 9.99 22.51 0.22 -0.96 16 7 C -0.12 -3.35 6.35 -20.21 -0.13 -3.48 16 8 C -0.17 -4.56 5.88 -18.61 -0.11 -4.67 16 9 C 0.09 2.80 5.33 85.56 0.46 3.25 16 10 N -0.48 -18.08 6.15 -911.60 -5.61 -23.68 16 11 C 0.01 0.46 7.50 86.41 0.65 1.11 16 12 C 0.02 0.79 3.60 -10.89 -0.04 0.75 16 13 C -0.53 -28.17 8.77 25.60 0.22 -27.95 16 14 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 15 C 0.02 0.90 5.46 84.66 0.46 1.36 16 16 N -0.92 -52.81 13.29 21.45 0.28 -52.52 16 17 Si 0.95 42.17 29.54 68.60 2.03 44.19 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 21 C 0.04 1.68 6.90 86.34 0.60 2.28 16 22 C 0.07 1.52 11.74 82.99 0.97 2.49 16 23 N -0.58 -11.62 6.05 -186.96 -1.13 -12.75 16 24 H 0.43 6.27 8.96 -92.71 -0.83 5.43 16 25 C 0.13 3.12 6.98 39.42 0.28 3.39 16 26 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 27 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.12 3.53 6.85 -2.91 -0.02 3.51 16 29 H 0.04 1.24 7.38 -2.39 -0.02 1.23 16 30 H 0.09 2.31 8.08 -2.39 -0.02 2.30 16 31 H 0.06 2.38 7.88 -2.38 -0.02 2.36 16 32 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 2.22 6.80 -2.39 -0.02 2.21 16 37 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -64.67 324.87 1.46 -63.21 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.28 Total: 13.04 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 5.26 Total: -19.49 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -6.10 Total: -100.95 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -64.67 1.46 -63.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139701414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.244 kcal (2) G-P(sol) polarization free energy of solvation -64.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds