Wall clock time and date at job start Tue Mar 31 2020 05:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36933 * 119.99953 * 2 1 4 4 H 1.08002 * 119.99510 * 202.46101 * 3 2 1 5 5 C 1.38807 * 120.00128 * 22.45039 * 3 2 1 6 6 N 1.31624 * 120.00087 * 11.37536 * 5 3 2 7 7 Si 1.86801 * 120.00094 * 191.36651 * 5 3 2 8 8 H 1.48500 * 109.47060 * 60.00413 * 7 5 3 9 9 H 1.48498 * 109.46888 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47163 * 300.00182 * 7 5 3 11 11 C 1.46498 * 119.99680 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47015 * 270.00066 * 11 2 1 13 13 C 1.37936 * 119.95496 * 260.02014 * 12 11 2 14 14 C 1.38542 * 120.61799 * 179.97438 * 13 12 11 15 15 C 1.37952 * 120.12037 * 0.04247 * 14 13 12 16 16 C 1.39037 * 119.72738 * 359.92311 * 15 14 13 17 17 C 1.47548 * 134.00551 * 180.02562 * 16 15 14 18 18 C 1.39073 * 134.00584 * 0.02562 * 17 16 15 19 19 C 1.37903 * 119.73125 * 179.97438 * 18 17 16 20 20 C 1.38588 * 120.12320 * 0.02562 * 19 18 17 21 21 C 1.37888 * 120.61545 * 0.02952 * 20 19 18 22 22 C 1.38990 * 120.09224 * 359.94605 * 21 20 19 23 23 O 1.35126 * 132.32583 * 180.02562 * 22 21 20 24 24 C 1.35117 * 111.54915 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47134 * 274.12180 * 1 2 3 26 26 H 1.09000 * 109.47235 * 34.12298 * 1 2 3 27 27 H 1.09005 * 109.46669 * 154.12113 * 1 2 3 28 28 H 0.96998 * 119.99857 * 180.02562 * 6 5 3 29 29 H 1.08997 * 109.47132 * 149.99980 * 11 2 1 30 30 H 1.09004 * 109.47388 * 30.00102 * 11 2 1 31 31 H 1.08004 * 119.68820 * 0.02562 * 13 12 11 32 32 H 1.07998 * 119.94043 * 180.02562 * 14 13 12 33 33 H 1.08000 * 120.13155 * 180.02562 * 15 14 13 34 34 H 1.07999 * 120.13580 * 0.02562 * 18 17 16 35 35 H 1.08001 * 119.94154 * 180.30491 * 19 18 17 36 36 H 1.08009 * 119.69502 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.95346 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1683 1.2213 -0.3574 5 6 1.5346 2.3424 0.4591 6 7 0.3862 2.2680 1.0979 7 14 2.3367 4.0046 0.1704 8 1 2.4887 4.2342 -1.2888 9 1 1.4860 5.0727 0.7541 10 1 3.6733 4.0282 0.8171 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7031 1.4216 13 6 3.6803 -1.4824 2.0018 14 6 3.9260 -1.8756 3.3073 15 6 2.9361 -2.4952 4.0416 16 6 1.6907 -2.7219 3.4666 17 6 0.4382 -3.3388 3.9439 18 6 0.0434 -3.9195 5.1444 19 6 -1.2358 -4.4176 5.2751 20 6 -2.1241 -4.3402 4.2141 21 6 -1.7427 -3.7675 3.0192 22 6 -0.4577 -3.2595 2.8687 23 8 0.1675 -2.6586 1.8324 24 6 1.4389 -2.3251 2.1457 25 1 -0.3633 0.0739 1.0250 26 1 -0.3634 0.8507 -0.5765 27 1 -0.3633 -0.9247 -0.4486 28 1 -0.0438 3.0762 1.4183 29 1 3.1499 -1.1387 -0.5133 30 1 1.6084 -2.0287 -0.5129 31 1 4.4603 -0.9977 1.4333 32 1 4.8943 -1.6970 3.7509 33 1 3.1272 -2.8015 5.0595 34 1 0.7357 -3.9793 5.9712 35 1 -1.5475 -4.8648 6.2074 36 1 -3.1243 -4.7329 4.3239 37 1 -2.4435 -3.7132 2.1992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139858903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:41 Heat of formation + Delta-G solvation = 68.013164 kcal Electronic energy + Delta-G solvation = -21459.074805 eV Core-core repulsion = 18361.258604 eV Total energy + Delta-G solvation = -3097.816201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.02796 -38.14884 -37.22442 -35.47851 -32.46633 -31.45637 -30.33653 -29.59392 -28.76719 -26.03429 -25.60676 -23.47909 -22.68834 -21.91033 -21.27335 -19.68186 -18.06449 -16.90545 -16.50169 -16.26486 -15.77868 -14.95190 -14.73855 -14.62916 -14.02825 -13.72327 -13.54465 -13.29676 -13.11212 -12.82679 -12.16964 -12.00072 -11.87208 -11.78804 -11.50092 -11.13957 -10.91875 -10.85595 -10.65238 -10.43966 -10.23756 -10.02672 -9.90135 -9.48865 -8.78162 -8.55763 -7.80893 -7.68921 -6.78283 -5.73729 -3.17985 0.93437 1.30758 1.99019 2.14687 3.00639 3.38126 3.43130 3.44119 3.82401 4.20941 4.50557 4.62407 4.78076 4.96559 5.08773 5.29285 5.36935 5.42150 5.47095 5.54824 5.71432 5.74824 5.78885 5.89914 6.09445 6.19170 6.27710 6.38245 6.46912 6.51178 6.60673 6.75772 6.79057 6.84637 6.89158 7.06814 7.18359 7.41361 7.64396 7.75522 7.83004 8.37061 9.20975 9.83172 10.33167 11.30338 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020213 B = 0.005481 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.946998 B = 5107.441451 C = 5664.369650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.587 5.587 3 C -0.255 4.255 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.180 3.820 12 C -0.071 4.071 13 C -0.080 4.080 14 C -0.135 4.135 15 C -0.087 4.087 16 C -0.131 4.131 17 C -0.117 4.117 18 C -0.068 4.068 19 C -0.148 4.148 20 C -0.093 4.093 21 C -0.116 4.116 22 C 0.087 3.913 23 O -0.190 6.190 24 C 0.099 3.901 25 H 0.027 0.973 26 H 0.045 0.955 27 H -0.001 1.001 28 H 0.254 0.746 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -13.378 6.285 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.307 5.307 3 C -0.384 4.384 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.546 5.546 7 Si 0.736 3.264 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.053 3.947 12 C -0.076 4.076 13 C -0.099 4.099 14 C -0.154 4.154 15 C -0.106 4.106 16 C -0.132 4.132 17 C -0.118 4.118 18 C -0.086 4.086 19 C -0.166 4.166 20 C -0.111 4.111 21 C -0.135 4.135 22 C 0.040 3.960 23 O -0.094 6.094 24 C 0.052 3.948 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.017 0.983 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.188 -13.133 6.045 14.459 hybrid contribution 0.327 1.153 0.332 1.243 sum 0.139 -11.980 6.378 13.573 Atomic orbital electron populations 1.20798 0.82019 0.95594 0.99346 1.44172 1.02122 1.00181 1.84267 1.19210 0.98393 0.85051 1.35769 0.91147 1.25100 0.97673 0.98699 0.98075 1.70086 1.17723 1.27315 1.39449 0.86307 0.78553 0.83594 0.77920 1.20927 1.21615 1.20855 1.19988 0.96961 0.88847 0.88907 1.20252 0.89923 0.95855 1.01524 1.20785 0.95746 0.98451 0.94928 1.20934 0.98979 1.00660 0.94778 1.20221 0.91068 1.00059 0.99251 1.19260 0.94353 1.04937 0.94663 1.19415 0.93422 1.03472 0.95490 1.20447 0.96219 0.96560 0.95355 1.20934 0.93553 1.02831 0.99268 1.20842 0.99643 0.98652 0.91956 1.19981 0.92188 1.01964 0.99367 1.19658 0.94234 0.96109 0.86013 1.84096 1.23126 1.65510 1.36646 1.19344 0.83070 0.98918 0.93419 0.95418 0.93602 0.98253 0.93606 0.92230 0.93201 0.85098 0.85866 0.86384 0.85797 0.85539 0.85002 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.35 9.01 59.85 0.54 4.89 16 2 N -0.59 -15.19 2.91 -182.50 -0.53 -15.72 16 3 C -0.25 -7.01 9.67 -15.06 -0.15 -7.16 16 4 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 5 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 6 N -0.90 -26.91 10.59 55.49 0.59 -26.32 16 7 Si 0.91 21.96 29.57 -169.99 -5.03 16.94 16 8 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.18 3.88 5.84 -5.20 -0.03 3.84 16 12 C -0.07 -1.48 5.48 -104.47 -0.57 -2.05 16 13 C -0.08 -1.46 9.63 -39.58 -0.38 -1.84 16 14 C -0.14 -2.19 10.04 -39.57 -0.40 -2.59 16 15 C -0.09 -1.45 10.08 -39.39 -0.40 -1.85 16 16 C -0.13 -2.50 6.38 -105.07 -0.67 -3.17 16 17 C -0.12 -2.06 6.38 -105.06 -0.67 -2.73 16 18 C -0.07 -0.94 10.08 -39.39 -0.40 -1.34 16 19 C -0.15 -1.74 10.04 -39.57 -0.40 -2.13 16 20 C -0.09 -1.10 10.01 -39.58 -0.40 -1.50 16 21 C -0.12 -1.70 10.06 -39.43 -0.40 -2.09 16 22 C 0.09 1.59 7.34 -38.58 -0.28 1.30 16 23 O -0.19 -4.00 10.58 1.10 0.01 -3.99 16 24 C 0.10 2.09 7.04 -38.58 -0.27 1.82 16 25 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 26 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 27 H 0.00 -0.02 7.85 -51.93 -0.41 -0.43 16 28 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.06 1.17 7.88 -51.93 -0.41 0.76 16 30 H 0.05 1.01 7.86 -51.93 -0.41 0.60 16 31 H 0.13 2.17 8.02 -52.48 -0.42 1.74 16 32 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -32.26 317.91 -9.61 -41.87 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.49 Total: -1.00 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -4.96 Total: -16.58 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.06 Total: -42.04 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: 0.01 Total: -3.99 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.26 -9.61 -41.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139858903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.887 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds