Wall clock time and date at job start Tue Mar 31 2020 05:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36933 * 119.99953 * 2 1 4 4 H 1.08002 * 119.99510 * 202.46101 * 3 2 1 5 5 C 1.38807 * 120.00128 * 22.45039 * 3 2 1 6 6 N 1.31624 * 120.00087 * 11.37536 * 5 3 2 7 7 Si 1.86801 * 120.00094 * 191.36651 * 5 3 2 8 8 H 1.48500 * 109.47060 * 60.00413 * 7 5 3 9 9 H 1.48498 * 109.46888 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47163 * 300.00182 * 7 5 3 11 11 C 1.46498 * 119.99680 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47015 * 270.00066 * 11 2 1 13 13 C 1.37936 * 119.95496 * 260.02014 * 12 11 2 14 14 C 1.38542 * 120.61799 * 179.97438 * 13 12 11 15 15 C 1.37952 * 120.12037 * 0.04247 * 14 13 12 16 16 C 1.39037 * 119.72738 * 359.92311 * 15 14 13 17 17 C 1.47548 * 134.00551 * 180.02562 * 16 15 14 18 18 C 1.39073 * 134.00584 * 0.02562 * 17 16 15 19 19 C 1.37903 * 119.73125 * 179.97438 * 18 17 16 20 20 C 1.38588 * 120.12320 * 0.02562 * 19 18 17 21 21 C 1.37888 * 120.61545 * 0.02952 * 20 19 18 22 22 C 1.38990 * 120.09224 * 359.94605 * 21 20 19 23 23 O 1.35126 * 132.32583 * 180.02562 * 22 21 20 24 24 C 1.35117 * 111.54915 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47134 * 274.12180 * 1 2 3 26 26 H 1.09000 * 109.47235 * 34.12298 * 1 2 3 27 27 H 1.09005 * 109.46669 * 154.12113 * 1 2 3 28 28 H 0.96998 * 119.99857 * 180.02562 * 6 5 3 29 29 H 1.08997 * 109.47132 * 149.99980 * 11 2 1 30 30 H 1.09004 * 109.47388 * 30.00102 * 11 2 1 31 31 H 1.08004 * 119.68820 * 0.02562 * 13 12 11 32 32 H 1.07998 * 119.94043 * 180.02562 * 14 13 12 33 33 H 1.08000 * 120.13155 * 180.02562 * 15 14 13 34 34 H 1.07999 * 120.13580 * 0.02562 * 18 17 16 35 35 H 1.08001 * 119.94154 * 180.30491 * 19 18 17 36 36 H 1.08009 * 119.69502 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.95346 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1683 1.2213 -0.3574 5 6 1.5346 2.3424 0.4591 6 7 0.3862 2.2680 1.0979 7 14 2.3367 4.0046 0.1704 8 1 2.4887 4.2342 -1.2888 9 1 1.4860 5.0727 0.7541 10 1 3.6733 4.0282 0.8171 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7031 1.4216 13 6 3.6803 -1.4824 2.0018 14 6 3.9260 -1.8756 3.3073 15 6 2.9361 -2.4952 4.0416 16 6 1.6907 -2.7219 3.4666 17 6 0.4382 -3.3388 3.9439 18 6 0.0434 -3.9195 5.1444 19 6 -1.2358 -4.4176 5.2751 20 6 -2.1241 -4.3402 4.2141 21 6 -1.7427 -3.7675 3.0192 22 6 -0.4577 -3.2595 2.8687 23 8 0.1675 -2.6586 1.8324 24 6 1.4389 -2.3251 2.1457 25 1 -0.3633 0.0739 1.0250 26 1 -0.3634 0.8507 -0.5765 27 1 -0.3633 -0.9247 -0.4486 28 1 -0.0438 3.0762 1.4183 29 1 3.1499 -1.1387 -0.5133 30 1 1.6084 -2.0287 -0.5129 31 1 4.4603 -0.9977 1.4333 32 1 4.8943 -1.6970 3.7509 33 1 3.1272 -2.8015 5.0595 34 1 0.7357 -3.9793 5.9712 35 1 -1.5475 -4.8648 6.2074 36 1 -3.1243 -4.7329 4.3239 37 1 -2.4435 -3.7132 2.1992 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139858903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:40 Heat of formation + Delta-G solvation = 50.683127 kcal Electronic energy + Delta-G solvation = -21459.826292 eV Core-core repulsion = 18361.258604 eV Total energy + Delta-G solvation = -3098.567688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.34276 -39.43888 -38.48794 -37.34353 -34.09336 -32.95369 -31.80465 -30.95268 -30.01944 -28.04450 -27.41650 -24.77072 -24.00001 -23.33998 -22.92231 -21.08337 -19.34595 -18.75502 -17.96583 -17.51750 -17.22125 -16.77318 -15.99038 -15.88991 -15.53201 -15.36583 -15.08081 -14.83336 -14.69107 -14.11803 -13.76025 -13.33341 -13.20118 -13.13964 -13.00091 -12.77584 -12.76538 -12.53979 -12.21537 -12.15973 -11.95240 -11.92994 -11.70881 -10.73479 -10.66284 -10.01079 -9.08372 -9.06878 -8.81593 -7.84457 -5.33522 -0.27430 0.10909 0.67538 0.87261 1.45253 1.48769 1.55020 1.72661 2.48806 2.66639 2.88389 3.31197 3.39688 3.61813 3.75457 3.79911 4.07255 4.14142 4.21640 4.31298 4.37085 4.44684 4.54387 4.62315 4.71022 4.76689 4.88675 4.97843 5.03954 5.21548 5.29767 5.33717 5.44252 5.46906 5.49724 5.57995 5.60780 5.64219 5.73849 5.93634 6.26910 6.30330 7.09745 7.79662 8.27429 9.19698 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020213 B = 0.005481 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.946998 B = 5107.441451 C = 5664.369650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.192 3.808 2 N -0.605 5.605 3 C -0.260 4.260 4 H 0.082 0.918 5 C -0.056 4.056 6 N -0.942 5.942 7 Si 0.974 3.026 8 H -0.275 1.275 9 H -0.298 1.298 10 H -0.271 1.271 11 C 0.182 3.818 12 C -0.101 4.101 13 C -0.087 4.087 14 C -0.132 4.132 15 C -0.083 4.083 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.073 4.073 19 C -0.134 4.134 20 C -0.079 4.079 21 C -0.133 4.133 22 C 0.043 3.957 23 O -0.222 6.222 24 C 0.063 3.937 25 H -0.008 1.008 26 H 0.021 0.979 27 H 0.016 0.984 28 H 0.246 0.754 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 -14.810 8.618 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.326 5.326 3 C -0.390 4.390 4 H 0.099 0.901 5 C -0.250 4.250 6 N -0.589 5.589 7 Si 0.802 3.198 8 H -0.201 1.201 9 H -0.225 1.225 10 H -0.197 1.197 11 C 0.056 3.944 12 C -0.105 4.105 13 C -0.106 4.106 14 C -0.150 4.150 15 C -0.101 4.101 16 C -0.148 4.148 17 C -0.143 4.143 18 C -0.091 4.091 19 C -0.152 4.152 20 C -0.096 4.096 21 C -0.151 4.151 22 C -0.003 4.003 23 O -0.127 6.127 24 C 0.017 3.983 25 H 0.010 0.990 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.163 0.837 32 H 0.182 0.818 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.189 0.811 36 H 0.192 0.808 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.726 -14.618 8.382 16.866 hybrid contribution 0.001 1.340 -0.286 1.370 sum 0.727 -13.278 8.096 15.569 Atomic orbital electron populations 1.20372 0.83005 0.95166 0.96765 1.44269 1.01854 1.01409 1.85075 1.19596 0.98643 0.85897 1.34823 0.90081 1.25914 0.98397 1.02273 0.98444 1.70297 1.19570 1.27487 1.41529 0.85239 0.77685 0.78913 0.78002 1.20053 1.22462 1.19668 1.20014 0.97088 0.87113 0.90163 1.20214 0.91454 0.98146 1.00674 1.21114 0.95179 0.98051 0.96208 1.21383 1.00579 0.99265 0.93761 1.20743 0.89962 0.98617 1.00765 1.19720 0.95940 1.04969 0.94203 1.19688 0.92740 1.05037 0.96865 1.20882 0.97826 0.95759 0.94586 1.21507 0.92272 1.00756 1.00672 1.21416 1.01446 0.96310 0.90446 1.20416 0.91154 1.02350 1.01202 1.20324 0.95961 0.97883 0.86123 1.84006 1.23577 1.66655 1.38443 1.19706 0.83399 1.00217 0.94941 0.99012 0.96035 0.96518 0.94481 0.90578 0.93079 0.83677 0.81810 0.82741 0.83177 0.81142 0.80802 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.63 9.01 127.77 1.15 11.78 16 2 N -0.60 -32.42 2.91 -731.30 -2.13 -34.55 16 3 C -0.26 -14.58 9.67 84.03 0.81 -13.76 16 4 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 5 C -0.06 -3.22 5.13 84.86 0.44 -2.78 16 6 N -0.94 -58.72 10.59 21.65 0.23 -58.50 16 7 Si 0.97 45.96 29.57 68.60 2.03 47.98 16 8 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 9 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 C 0.18 8.09 5.84 85.63 0.50 8.59 16 12 C -0.10 -4.33 5.48 -19.77 -0.11 -4.44 16 13 C -0.09 -3.12 9.63 22.27 0.21 -2.91 16 14 C -0.13 -3.99 10.04 22.27 0.22 -3.77 16 15 C -0.08 -2.60 10.08 22.39 0.23 -2.37 16 16 C -0.15 -5.66 6.38 -20.15 -0.13 -5.79 16 17 C -0.14 -4.98 6.38 -20.15 -0.13 -5.11 16 18 C -0.07 -1.83 10.08 22.39 0.23 -1.60 16 19 C -0.13 -2.60 10.04 22.27 0.22 -2.38 16 20 C -0.08 -1.61 10.01 22.27 0.22 -1.39 16 21 C -0.13 -3.83 10.06 22.37 0.22 -3.61 16 22 C 0.04 1.62 7.34 22.92 0.17 1.79 16 23 O -0.22 -9.98 10.58 -18.98 -0.20 -10.18 16 24 C 0.06 2.80 7.04 22.92 0.16 2.96 16 25 H -0.01 -0.53 7.42 -2.39 -0.02 -0.54 16 26 H 0.02 1.24 7.19 -2.39 -0.02 1.22 16 27 H 0.02 0.82 7.85 -2.38 -0.02 0.80 16 28 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.08 3.03 7.88 -2.39 -0.02 3.01 16 30 H 0.05 2.18 7.86 -2.39 -0.02 2.17 16 31 H 0.15 4.64 8.02 -2.91 -0.02 4.62 16 32 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -75.15 317.91 5.43 -69.73 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.07 Total: 10.30 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 4.42 Total: -24.79 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -1.90 Total: -93.04 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.20 Total: -10.18 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -75.15 5.43 -69.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139858903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.410 kcal (2) G-P(sol) polarization free energy of solvation -75.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds