Wall clock time and date at job start Tue Mar 31 2020 05:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46806 * 2 1 4 4 C 1.34731 * 116.99780 * 180.02562 * 3 2 1 5 5 O 1.21491 * 120.00338 * 359.97438 * 4 3 2 6 6 C 1.47600 * 119.99707 * 180.02562 * 4 3 2 7 7 C 1.41048 * 125.96438 * 180.02562 * 6 4 3 8 8 C 1.35738 * 107.78671 * 180.02562 * 7 6 4 9 9 N 1.39520 * 126.09706 * 180.02562 * 8 7 6 10 10 C 1.34767 * 119.99991 * 359.96575 * 9 8 7 11 11 O 1.21287 * 120.00590 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99879 * 180.02562 * 10 9 8 13 13 C 1.50698 * 109.47330 * 180.02562 * 12 10 9 14 14 H 1.08008 * 119.99815 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00213 * 180.02562 * 13 12 10 16 16 N 1.31507 * 119.99983 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99941 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47351 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47056 * 119.99968 * 17 15 13 20 20 H 1.48504 * 109.46862 * 239.99598 * 17 15 13 21 21 N 1.35974 * 107.80236 * 359.97438 * 8 7 6 22 22 C 1.46502 * 125.96023 * 180.02562 * 21 8 7 23 23 N 1.31919 * 125.96914 * 0.02562 * 6 4 3 24 24 H 1.09000 * 109.46780 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47053 * 299.99306 * 1 2 3 26 26 H 1.08995 * 109.47438 * 59.99691 * 1 2 3 27 27 H 1.09004 * 109.46896 * 240.00974 * 2 1 3 28 28 H 1.08995 * 109.47438 * 120.00309 * 2 1 3 29 29 H 1.08001 * 126.10665 * 0.03461 * 7 6 4 30 30 H 0.97001 * 119.99361 * 179.97438 * 9 8 7 31 31 H 1.09002 * 109.46639 * 299.99672 * 12 10 9 32 32 H 1.08998 * 109.47220 * 59.99901 * 12 10 9 33 33 H 0.97004 * 120.00510 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.46990 * 270.00280 * 22 21 8 35 35 H 1.08999 * 109.46725 * 29.99841 * 22 21 8 36 36 H 1.08991 * 109.47408 * 150.00040 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3496 1.5455 -0.0005 5 8 4.0898 0.5821 -0.0005 6 6 3.9137 2.9095 0.0000 7 6 5.2852 3.2387 -0.0010 8 6 5.3867 4.5923 0.0005 9 7 6.5724 5.3276 -0.0003 10 6 7.7602 4.6909 -0.0021 11 8 7.7986 3.4787 -0.0035 12 6 9.0409 5.4853 -0.0023 13 6 10.2167 4.5427 -0.0051 14 1 10.0530 3.4751 -0.0061 15 6 11.5015 5.0431 -0.0053 16 7 11.7008 6.3429 -0.0036 17 14 12.9589 3.8746 -0.0080 18 1 12.4694 2.4727 -0.0091 19 1 13.7821 4.1128 -1.2208 20 1 13.7839 4.1095 1.2042 21 7 4.1268 5.1037 0.0018 22 6 3.7757 6.5260 0.0032 23 7 3.2232 4.0335 0.0015 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 6.1077 2.5388 -0.0028 30 1 6.5417 6.2972 0.0006 31 1 9.0780 6.1144 -0.8917 32 1 9.0797 6.1125 0.8883 33 1 12.6047 6.6951 -0.0041 34 1 3.6894 6.8779 1.0312 35 1 4.5523 7.0924 -0.5108 36 1 2.8243 6.6658 -0.5098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:19 Heat of formation + Delta-G solvation = -40.317644 kcal Electronic energy + Delta-G solvation = -21198.218843 eV Core-core repulsion = 17684.855802 eV Total energy + Delta-G solvation = -3513.363041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49152 -40.13275 -38.84518 -36.59945 -34.59839 -33.20908 -33.07556 -31.84838 -29.93504 -28.28296 -27.50042 -24.54961 -23.94866 -22.65832 -21.34832 -20.47286 -19.41557 -18.36516 -17.21654 -16.68012 -16.53415 -15.92703 -15.80874 -15.62344 -14.93104 -14.44089 -14.38912 -14.20312 -13.68175 -13.57248 -13.06547 -12.89474 -12.82322 -12.55983 -12.23993 -12.09419 -11.78234 -11.56239 -10.99315 -10.86384 -10.78236 -10.69959 -10.64500 -10.58984 -10.05273 -9.40847 -9.06113 -8.99525 -8.55594 -7.97133 -6.18215 -4.18901 1.17578 1.99531 2.14547 2.54341 3.21603 3.28708 3.36085 3.39931 3.48797 3.51096 4.24256 4.40171 4.69981 4.74525 4.80915 4.96891 5.07889 5.17029 5.21107 5.24230 5.38469 5.56691 5.57372 5.73562 5.85407 5.98254 6.13575 6.30577 6.66395 6.93531 7.03527 7.08573 7.29020 7.68592 7.81585 7.85938 8.12708 8.77064 8.92671 9.47338 10.93913 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.003535 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.578191 B = 7917.924117 C = 9037.451243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.345 6.345 4 C 0.555 3.445 5 O -0.487 6.487 6 C 0.051 3.949 7 C -0.231 4.231 8 C 0.320 3.680 9 N -0.662 5.662 10 C 0.519 3.481 11 O -0.500 6.500 12 C 0.014 3.986 13 C -0.513 4.513 14 H 0.079 0.921 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.903 3.097 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.283 1.283 21 N -0.379 5.379 22 C 0.097 3.903 23 N -0.239 5.239 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.188 0.812 30 H 0.409 0.591 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.263 0.737 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.190 -1.076 -0.046 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.262 6.262 4 C 0.396 3.604 5 O -0.371 6.371 6 C -0.112 4.112 7 C -0.263 4.263 8 C 0.101 3.899 9 N -0.312 5.312 10 C 0.309 3.691 11 O -0.371 6.371 12 C -0.026 4.026 13 C -0.552 4.552 14 H 0.097 0.903 15 C -0.144 4.144 16 N -0.539 5.539 17 Si 0.731 3.269 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.209 1.209 21 N -0.171 5.171 22 C -0.044 4.044 23 N -0.069 5.069 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.205 0.795 30 H 0.245 0.755 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.875 -1.570 -0.046 20.934 hybrid contribution 1.501 -0.149 0.006 1.509 sum -19.373 -1.719 -0.039 19.450 Atomic orbital electron populations 1.21795 0.92544 1.02858 1.03628 1.23084 0.95395 0.80001 1.02877 1.86634 1.23254 1.32240 1.84029 1.19600 0.80555 0.87290 0.72933 1.90892 1.60529 1.40851 1.44836 1.20711 0.93194 0.90413 1.06919 1.21622 0.95580 0.93258 1.15853 1.18283 0.80536 0.90949 1.00097 1.43863 1.02671 1.10227 1.74410 1.22529 0.83959 0.89617 0.72975 1.90526 1.85920 1.14898 1.45744 1.19298 0.86713 0.96452 1.00109 1.21171 0.89089 0.94029 1.50892 0.90293 1.24992 0.99231 0.95348 0.94840 1.69947 1.21827 1.11406 1.50672 0.86332 0.81721 0.81335 0.77547 1.19289 1.20917 1.20922 1.48762 1.02071 1.06650 1.59653 1.21925 1.03634 0.75024 1.03796 1.77766 1.13141 0.92567 1.23470 0.90216 0.91428 0.91433 0.90981 0.90980 0.79549 0.75516 0.92726 0.92715 0.92751 0.90261 0.89418 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 37.16 0.38 -0.71 16 2 C 0.06 0.62 6.20 37.16 0.23 0.85 16 3 O -0.35 -4.84 10.22 -40.58 -0.41 -5.25 16 4 C 0.56 9.24 7.97 34.55 0.28 9.51 16 5 O -0.49 -9.06 16.69 -19.26 -0.32 -9.38 16 6 C 0.05 0.90 7.11 -82.95 -0.59 0.31 16 7 C -0.23 -4.39 9.41 -39.41 -0.37 -4.77 16 8 C 0.32 5.35 7.67 -152.60 -1.17 4.18 16 9 N -0.66 -10.64 5.42 -11.37 -0.06 -10.70 16 10 C 0.52 10.88 7.79 -10.99 -0.09 10.79 16 11 O -0.50 -12.16 12.58 5.55 0.07 -12.09 16 12 C 0.01 0.32 5.46 -29.03 -0.16 0.16 16 13 C -0.51 -14.07 8.92 -34.44 -0.31 -14.37 16 14 H 0.08 2.27 6.75 -52.48 -0.35 1.91 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -25.11 13.29 55.43 0.74 -24.38 16 17 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 N -0.38 -5.31 4.04 -67.08 -0.27 -5.58 16 22 C 0.10 0.80 11.28 59.85 0.68 1.48 16 23 N -0.24 -3.82 12.61 33.32 0.42 -3.40 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.19 4.03 5.81 -52.49 -0.30 3.73 16 30 H 0.41 4.92 7.96 -40.82 -0.33 4.59 16 31 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.54 7.50 -51.93 -0.39 0.15 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 322.85 15.07 4.87 4.87 Total: -1.00 -33.81 322.85 -5.53 -39.33 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.31 Total: 1.28 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -1.22 Total: 8.90 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.82 Total: -44.06 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.67 Total: -26.73 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.81 -5.53 -39.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.984 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds