Wall clock time and date at job start Tue Mar 31 2020 05:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47002 * 2 1 4 4 C 1.34881 * 116.99817 * 179.97438 * 3 2 1 5 5 O 1.21610 * 119.99571 * 0.02562 * 4 3 2 6 6 C 1.46587 * 120.00026 * 179.97438 * 4 3 2 7 7 N 1.38190 * 126.85335 * 0.27732 * 6 4 3 8 8 H 0.97000 * 126.48372 * 0.04420 * 7 6 4 9 9 C 1.34469 * 107.04950 * 180.14294 * 7 6 4 10 10 N 1.30883 * 109.17842 * 359.61603 * 9 7 6 11 11 C 1.33270 * 109.70448 * 0.24511 * 10 9 7 12 12 C 1.50707 * 126.11334 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.46927 * 89.97608 * 12 11 10 14 14 C 1.34772 * 119.99782 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00402 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99937 * 179.97438 * 14 13 12 17 17 C 1.50707 * 109.47462 * 179.97438 * 16 14 13 18 18 H 1.08004 * 119.99097 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00224 * 180.02562 * 17 16 14 20 20 N 1.31514 * 119.99979 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99861 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46963 * 90.00079 * 21 19 17 23 23 H 1.48499 * 109.47105 * 210.00110 * 21 19 17 24 24 H 1.48501 * 109.47317 * 330.00565 * 21 19 17 25 25 H 1.08997 * 109.47104 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47172 * 299.99750 * 1 2 3 27 27 H 1.09001 * 109.46959 * 60.00065 * 1 2 3 28 28 H 1.08996 * 109.47356 * 239.99502 * 2 1 3 29 29 H 1.09001 * 109.46959 * 119.99935 * 2 1 3 30 30 H 1.08002 * 125.41411 * 179.88767 * 9 7 6 31 31 H 1.09001 * 109.47084 * 209.97242 * 12 11 10 32 32 H 1.09000 * 109.46828 * 329.97414 * 12 11 10 33 33 H 0.96998 * 120.00080 * 359.97438 * 13 12 11 34 34 H 1.08994 * 109.47751 * 299.99978 * 16 14 13 35 35 H 1.09000 * 109.47260 * 59.99928 * 16 14 13 36 36 H 0.96997 * 119.99735 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3512 1.5457 0.0005 5 8 4.0919 0.5812 0.0005 6 6 3.9115 2.9002 0.0000 7 7 3.2065 4.0888 0.0043 8 1 2.2415 4.1869 0.0089 9 6 4.1110 5.0837 -0.0013 10 7 5.3150 4.5703 -0.0004 11 6 5.2361 3.2399 0.0004 12 6 6.3989 2.2812 0.0021 13 7 6.7747 1.9719 1.3839 14 6 7.7972 1.1296 1.6316 15 8 8.4060 0.6273 0.7107 16 6 8.1842 0.8118 3.0530 17 6 9.3469 -0.1470 3.0548 18 1 9.7641 -0.4914 2.1200 19 6 9.8779 -0.5845 4.2496 20 7 9.3695 -0.1654 5.3878 21 14 11.3186 -1.7734 4.2517 22 1 12.5916 -1.0086 4.2515 23 1 11.2542 -2.6271 5.4651 24 1 11.2556 -2.6297 3.0400 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8808 6.1389 -0.0016 31 1 6.1134 1.3629 -0.5110 32 1 7.2457 2.7363 -0.5116 33 1 6.2881 2.3738 2.1204 34 1 8.4695 1.7302 3.5660 35 1 7.3376 0.3566 3.5669 36 1 9.7433 -0.4729 6.2283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:24 Heat of formation + Delta-G solvation = -71.485137 kcal Electronic energy + Delta-G solvation = -21379.921032 eV Core-core repulsion = 17865.206467 eV Total energy + Delta-G solvation = -3514.714565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.58920 -40.26466 -38.41582 -36.83003 -34.45544 -32.88238 -32.80133 -32.00172 -30.58125 -28.86790 -26.43648 -24.43799 -23.15360 -22.87471 -21.84581 -20.09048 -19.49748 -19.14063 -17.29703 -16.90644 -16.26089 -16.22635 -15.72215 -15.55905 -15.06824 -14.69932 -14.24496 -14.14736 -14.07727 -13.81516 -13.14800 -12.72584 -12.42947 -12.38173 -12.27081 -11.96628 -11.93544 -11.06697 -10.92391 -10.82902 -10.69321 -10.52078 -10.46861 -10.35674 -9.85263 -9.15553 -9.11178 -8.43221 -8.35390 -8.23796 -5.95602 -3.94127 0.76933 2.18428 2.42748 2.65270 2.78398 3.42528 3.47023 3.55383 3.91015 4.05998 4.29217 4.43059 4.60318 4.61063 4.64106 4.74127 4.85774 4.96495 5.28022 5.41802 5.42680 5.42898 5.58067 5.85001 5.97615 6.08983 6.25344 6.52212 6.84263 7.17188 7.32510 7.46178 7.46900 7.59753 8.06758 8.19480 8.58629 9.17071 9.40298 9.70424 11.17078 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.003880 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.099821 B = 7214.760874 C = 8165.318254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.367 6.367 4 C 0.536 3.464 5 O -0.470 6.470 6 C -0.064 4.064 7 N -0.545 5.545 8 H 0.429 0.571 9 C 0.229 3.771 10 N -0.483 5.483 11 C 0.103 3.897 12 C 0.193 3.807 13 N -0.737 5.737 14 C 0.518 3.482 15 O -0.545 6.545 16 C 0.006 3.994 17 C -0.504 4.504 18 H 0.076 0.924 19 C 0.053 3.947 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.272 1.272 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.222 0.778 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.394 0.606 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.294 9.659 -10.534 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.285 6.285 4 C 0.379 3.621 5 O -0.355 6.355 6 C -0.179 4.179 7 N -0.150 5.150 8 H 0.269 0.731 9 C -0.055 4.055 10 N -0.202 5.202 11 C -0.033 4.033 12 C 0.068 3.932 13 N -0.392 5.392 14 C 0.308 3.692 15 O -0.421 6.421 16 C -0.033 4.033 17 C -0.542 4.542 18 H 0.094 0.906 19 C -0.147 4.147 20 N -0.543 5.543 21 Si 0.729 3.271 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.197 1.197 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.238 0.762 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.227 0.773 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.874 9.326 -11.033 25.385 hybrid contribution -0.938 -0.670 0.507 1.259 sum -21.811 8.656 -10.526 25.719 Atomic orbital electron populations 1.21813 0.92497 1.03240 1.03309 1.23090 0.95202 0.79352 1.03346 1.86505 1.23665 1.33343 1.84964 1.19485 0.80802 0.87635 0.74225 1.91027 1.59847 1.40223 1.44359 1.19874 0.92453 0.84314 1.21218 1.43333 1.10988 1.05810 1.54825 0.73090 1.25323 0.83642 0.95804 1.00782 1.70263 1.22629 1.07563 1.19788 1.21230 0.91701 0.91333 0.99024 1.19572 0.91843 0.95175 0.86599 1.46162 1.36682 1.50102 1.06231 1.21935 0.77193 0.75846 0.94179 1.90529 1.52782 1.51412 1.47397 1.19228 0.98609 0.98878 0.86596 1.21199 1.14117 1.25505 0.93391 0.90619 1.25007 0.97502 0.96823 0.95389 1.69970 1.41938 1.45173 0.97231 0.86429 0.82403 0.80871 0.77382 1.20652 1.21374 1.19652 0.89944 0.91491 0.91616 0.90824 0.90596 0.76222 0.89105 0.90311 0.77336 0.93474 0.93551 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.57 6.20 37.16 0.23 0.80 16 3 O -0.37 -3.85 10.23 -40.99 -0.42 -4.27 16 4 C 0.54 7.12 7.93 34.10 0.27 7.39 16 5 O -0.47 -7.93 14.61 -19.35 -0.28 -8.21 16 6 C -0.06 -0.77 7.13 -82.17 -0.59 -1.36 16 7 N -0.55 -4.16 6.19 -10.81 -0.07 -4.22 16 8 H 0.43 1.76 8.96 -40.82 -0.37 1.39 16 9 C 0.23 1.80 13.00 -90.58 -1.18 0.62 16 10 N -0.48 -6.22 11.20 -10.63 -0.12 -6.34 16 11 C 0.10 1.48 6.52 -82.50 -0.54 0.94 16 12 C 0.19 3.41 5.67 -5.19 -0.03 3.38 16 13 N -0.74 -14.56 5.55 -61.47 -0.34 -14.90 16 14 C 0.52 12.85 7.82 -10.99 -0.09 12.76 16 15 O -0.55 -15.23 15.46 5.56 0.09 -15.15 16 16 C 0.01 0.17 5.46 -29.03 -0.16 0.01 16 17 C -0.50 -15.30 8.92 -34.44 -0.31 -15.61 16 18 H 0.08 2.39 6.75 -52.48 -0.35 2.04 16 19 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 21 Si 0.90 22.91 29.54 -169.99 -5.02 17.89 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.22 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.09 1.73 6.48 -51.93 -0.34 1.39 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.39 6.98 8.46 -40.82 -0.35 6.64 16 34 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -38.08 323.95 -6.98 -45.06 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.34 Total: 1.99 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: -2.10 Total: 9.93 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.21 Total: -52.13 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.62 Total: -27.63 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -38.08 -6.98 -45.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.420 kcal (2) G-P(sol) polarization free energy of solvation -38.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds