Wall clock time and date at job start Tue Mar 31 2020 05:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35543 * 116.99936 * 2 1 4 4 N 1.32969 * 120.47908 * 0.29929 * 3 2 1 5 5 C 1.31750 * 120.86619 * 180.31169 * 4 3 2 6 6 N 1.31768 * 121.87035 * 359.66030 * 5 4 3 7 7 C 1.32970 * 120.86046 * 0.02562 * 6 5 4 8 8 O 1.35542 * 120.46888 * 179.97438 * 7 6 5 9 9 C 1.42898 * 117.00086 * 0.02562 * 8 7 6 10 10 C 1.39003 * 119.05168 * 359.97438 * 7 6 5 11 11 C 1.50703 * 120.84923 * 180.02562 * 10 7 6 12 12 N 1.46505 * 109.47064 * 89.99919 * 11 10 7 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99622 * 179.97438 * 13 12 11 16 16 C 1.50703 * 109.47064 * 180.02562 * 15 13 12 17 17 H 1.07995 * 120.00280 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99788 * 180.02562 * 16 15 13 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47061 * 60.00295 * 20 18 16 22 22 H 1.48505 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00069 * 20 18 16 24 24 H 1.09000 * 109.46931 * 60.00173 * 1 2 3 25 25 H 1.08993 * 109.47218 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47340 * 300.00860 * 1 2 3 27 27 H 1.07999 * 119.06862 * 179.68870 * 5 4 3 28 28 H 1.09007 * 109.46776 * 180.02562 * 9 8 7 29 29 H 1.09000 * 109.46987 * 299.99648 * 9 8 7 30 30 H 1.08997 * 109.47422 * 60.00160 * 9 8 7 31 31 H 1.09002 * 109.47152 * 330.00002 * 11 10 7 32 32 H 1.09001 * 109.46980 * 210.00103 * 11 10 7 33 33 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 34 34 H 1.09001 * 109.47380 * 300.00190 * 15 13 12 35 35 H 1.09002 * 109.47060 * 60.00278 * 15 13 12 36 36 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 7 1.3295 2.3289 0.0060 5 6 1.9196 3.5068 -0.0001 6 7 3.2318 3.6276 -0.0057 7 6 4.0156 2.5535 -0.0058 8 8 5.3644 2.6869 -0.0121 9 6 5.8846 4.0178 -0.0178 10 6 3.4319 1.2919 0.0005 11 6 4.2817 0.0473 0.0012 12 7 4.5625 -0.3515 1.3826 13 6 5.3101 -1.4453 1.6294 14 8 5.7509 -2.0992 0.7080 15 6 5.5995 -1.8553 3.0504 16 6 6.4491 -3.1000 3.0511 17 1 6.7499 -3.5490 2.1161 18 6 6.8425 -3.6655 4.2455 19 7 6.4758 -3.1190 5.3841 20 14 7.8950 -5.2087 4.2463 21 1 9.1728 -4.9368 3.5401 22 1 8.1802 -5.6126 5.6466 23 1 7.1694 -6.3032 3.5529 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.3107 4.3988 -0.0001 28 1 6.9741 3.9820 -0.0230 29 1 5.5345 4.5410 -0.9077 30 1 5.5423 4.5456 0.8723 31 1 5.2195 0.2474 -0.5170 32 1 3.7495 -0.7562 -0.5080 33 1 4.2096 0.1712 2.1196 34 1 6.1323 -1.0519 3.5591 35 1 4.6617 -2.0548 3.5691 36 1 6.7529 -3.5167 6.2244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:21 Heat of formation + Delta-G solvation = -62.793578 kcal Electronic energy + Delta-G solvation = -21714.181808 eV Core-core repulsion = 18199.844138 eV Total energy + Delta-G solvation = -3514.337670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.67077 -39.36239 -38.49020 -37.99665 -34.73869 -32.85221 -32.85084 -31.76620 -28.97300 -28.22714 -27.13949 -26.47133 -23.68621 -23.38609 -22.36330 -19.59426 -19.40705 -18.76876 -16.79225 -16.75287 -16.29283 -16.19427 -15.91379 -15.73828 -14.96136 -14.42852 -14.42302 -14.34406 -14.14097 -14.00917 -13.62093 -12.55859 -12.49334 -12.32663 -12.07127 -12.03143 -11.99465 -11.59415 -11.06586 -10.86612 -10.72629 -10.53023 -9.90067 -9.87287 -9.79161 -9.25441 -9.21530 -8.44746 -8.40356 -8.30612 -5.99802 -3.98858 0.65881 0.96547 2.33011 3.09184 3.41644 3.43061 3.43608 3.49618 3.79289 3.83860 3.87086 4.17740 4.54456 4.60521 4.77323 5.02944 5.06810 5.08063 5.09285 5.10530 5.31612 5.38333 5.39978 5.59517 6.00358 6.01945 6.43721 6.56735 6.77439 6.92736 7.11452 7.27030 7.40969 7.76430 8.02071 8.14085 8.52835 9.11891 9.33560 9.65850 11.12693 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.004107 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.421886 B = 6816.350663 C = 7621.257728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.286 6.286 3 C 0.400 3.600 4 N -0.596 5.596 5 C 0.372 3.628 6 N -0.596 5.596 7 C 0.400 3.600 8 O -0.286 6.286 9 C 0.038 3.962 10 C -0.247 4.247 11 C 0.188 3.812 12 N -0.741 5.741 13 C 0.517 3.483 14 O -0.546 6.546 15 C 0.006 3.994 16 C -0.506 4.506 17 H 0.075 0.925 18 C 0.054 3.946 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.204 0.796 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.393 0.607 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.337 16.511 -10.540 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.189 6.189 3 C 0.216 3.784 4 N -0.330 5.330 5 C 0.084 3.916 6 N -0.330 5.330 7 C 0.216 3.784 8 O -0.189 6.189 9 C -0.057 4.057 10 C -0.254 4.254 11 C 0.063 3.937 12 N -0.395 5.395 13 C 0.307 3.693 14 O -0.423 6.423 15 C -0.033 4.033 16 C -0.544 4.544 17 H 0.093 0.907 18 C -0.146 4.146 19 N -0.542 5.542 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.201 1.201 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.220 0.780 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.225 0.775 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.141 16.218 -11.029 22.556 hybrid contribution 0.465 -0.678 0.491 0.957 sum -10.676 15.540 -10.539 21.599 Atomic orbital electron populations 1.23017 0.76252 1.03752 1.02698 1.86341 1.23518 1.23180 1.85820 1.19576 0.88080 0.85123 0.85626 1.68183 1.41223 0.98836 1.24788 1.24378 0.86863 0.94108 0.86286 1.68193 1.07623 1.32422 1.24796 1.19575 0.84871 0.88334 0.85627 1.86341 1.14962 1.31737 1.85816 1.23019 0.99321 0.80685 1.02694 1.19707 0.92033 0.95640 1.18001 1.19548 0.97258 0.90866 0.86032 1.46325 1.56133 1.30497 1.06546 1.21966 0.75331 0.77857 0.94185 1.90528 1.51242 1.53103 1.47386 1.19226 0.98935 0.98529 0.86631 1.21143 1.30863 1.09076 0.93352 0.90708 1.25007 0.96476 0.97784 0.95378 1.69954 1.46334 1.40679 0.97268 0.86486 0.80822 0.83108 0.76599 1.20140 1.21422 1.20135 0.91952 0.87941 0.91752 0.77952 0.87942 0.91950 0.91754 0.90676 0.90674 0.77461 0.93555 0.93555 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.41 101.05 1.05 1.39 16 2 O -0.29 -3.74 9.65 -18.32 -0.18 -3.92 16 3 C 0.40 5.30 7.50 -16.77 -0.13 5.17 16 4 N -0.60 -6.80 9.38 -14.70 -0.14 -6.94 16 5 C 0.37 3.63 12.28 -92.21 -1.13 2.49 16 6 N -0.60 -6.81 9.38 -14.71 -0.14 -6.94 16 7 C 0.40 5.30 7.50 -16.78 -0.13 5.17 16 8 O -0.29 -3.74 9.66 -18.32 -0.18 -3.92 16 9 C 0.04 0.34 10.41 101.05 1.05 1.39 16 10 C -0.25 -3.50 5.31 -104.05 -0.55 -4.06 16 11 C 0.19 3.15 5.44 -5.19 -0.03 3.12 16 12 N -0.74 -13.97 5.55 -61.47 -0.34 -14.31 16 13 C 0.52 12.35 7.82 -10.99 -0.09 12.26 16 14 O -0.55 -14.79 15.46 5.56 0.09 -14.71 16 15 C 0.01 0.16 5.46 -29.03 -0.16 0.00 16 16 C -0.51 -15.06 8.92 -34.44 -0.31 -15.37 16 17 H 0.07 2.31 6.75 -52.49 -0.35 1.96 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 20 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 27 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.08 1.31 7.63 -51.93 -0.40 0.92 16 32 H 0.08 1.31 7.62 -51.93 -0.40 0.92 16 33 H 0.39 6.68 8.46 -40.82 -0.35 6.33 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -35.19 321.60 -5.26 -40.45 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.43 Total: 1.10 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -0.51 Total: 13.06 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.12 Total: -54.43 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.27 Total: -22.55 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.19 -5.26 -40.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.341 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds