Wall clock time and date at job start Tue Mar 31 2020 05:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35543 * 116.99936 * 2 1 4 4 N 1.32969 * 120.47908 * 0.29929 * 3 2 1 5 5 C 1.31750 * 120.86619 * 180.31169 * 4 3 2 6 6 N 1.31768 * 121.87035 * 359.66030 * 5 4 3 7 7 C 1.32970 * 120.86046 * 0.02562 * 6 5 4 8 8 O 1.35542 * 120.46888 * 179.97438 * 7 6 5 9 9 C 1.42898 * 117.00086 * 0.02562 * 8 7 6 10 10 C 1.39003 * 119.05168 * 359.97438 * 7 6 5 11 11 C 1.50703 * 120.84923 * 180.02562 * 10 7 6 12 12 N 1.46505 * 109.47064 * 89.99919 * 11 10 7 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99622 * 179.97438 * 13 12 11 16 16 C 1.50703 * 109.47064 * 180.02562 * 15 13 12 17 17 H 1.07995 * 120.00280 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99788 * 180.02562 * 16 15 13 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47061 * 60.00295 * 20 18 16 22 22 H 1.48505 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00069 * 20 18 16 24 24 H 1.09000 * 109.46931 * 60.00173 * 1 2 3 25 25 H 1.08993 * 109.47218 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47340 * 300.00860 * 1 2 3 27 27 H 1.07999 * 119.06862 * 179.68870 * 5 4 3 28 28 H 1.09007 * 109.46776 * 180.02562 * 9 8 7 29 29 H 1.09000 * 109.46987 * 299.99648 * 9 8 7 30 30 H 1.08997 * 109.47422 * 60.00160 * 9 8 7 31 31 H 1.09002 * 109.47152 * 330.00002 * 11 10 7 32 32 H 1.09001 * 109.46980 * 210.00103 * 11 10 7 33 33 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 34 34 H 1.09001 * 109.47380 * 300.00190 * 15 13 12 35 35 H 1.09002 * 109.47060 * 60.00278 * 15 13 12 36 36 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 7 1.3295 2.3289 0.0060 5 6 1.9196 3.5068 -0.0001 6 7 3.2318 3.6276 -0.0057 7 6 4.0156 2.5535 -0.0058 8 8 5.3644 2.6869 -0.0121 9 6 5.8846 4.0178 -0.0178 10 6 3.4319 1.2919 0.0005 11 6 4.2817 0.0473 0.0012 12 7 4.5625 -0.3515 1.3826 13 6 5.3101 -1.4453 1.6294 14 8 5.7509 -2.0992 0.7080 15 6 5.5995 -1.8553 3.0504 16 6 6.4491 -3.1000 3.0511 17 1 6.7499 -3.5490 2.1161 18 6 6.8425 -3.6655 4.2455 19 7 6.4758 -3.1190 5.3841 20 14 7.8950 -5.2087 4.2463 21 1 9.1728 -4.9368 3.5401 22 1 8.1802 -5.6126 5.6466 23 1 7.1694 -6.3032 3.5529 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.3107 4.3988 -0.0001 28 1 6.9741 3.9820 -0.0230 29 1 5.5345 4.5410 -0.9077 30 1 5.5423 4.5456 0.8723 31 1 5.2195 0.2474 -0.5170 32 1 3.7495 -0.7562 -0.5080 33 1 4.2096 0.1712 2.1196 34 1 6.1323 -1.0519 3.5591 35 1 4.6617 -2.0548 3.5691 36 1 6.7529 -3.5167 6.2244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:20 Heat of formation + Delta-G solvation = -91.506844 kcal Electronic energy + Delta-G solvation = -21715.426909 eV Core-core repulsion = 18199.844138 eV Total energy + Delta-G solvation = -3515.582771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.60632 -40.34661 -40.28374 -38.90863 -36.24844 -35.08117 -33.74285 -33.11509 -30.98728 -29.00486 -28.09785 -27.65656 -25.54696 -24.28598 -23.70280 -21.42516 -20.28738 -19.67797 -18.53360 -17.94835 -17.73756 -17.68868 -16.77426 -16.73863 -16.54197 -16.35302 -16.12606 -15.17198 -15.11994 -15.02242 -14.83478 -14.41124 -14.10741 -14.09450 -13.11283 -13.08326 -12.81553 -12.80535 -12.79829 -12.54246 -12.41097 -12.02372 -11.80423 -11.46032 -10.75961 -10.72860 -10.71500 -10.61659 -9.99863 -9.96815 -8.23862 -6.31425 -0.27078 0.01267 1.41125 1.44614 1.46269 1.53154 1.89401 2.20226 2.31298 2.46998 2.75685 3.01219 3.04532 3.11286 3.50966 3.73690 3.99940 4.36567 4.40854 4.41073 4.41745 4.41930 4.66495 4.69314 4.73739 4.74631 4.90480 5.07500 5.25932 5.49520 5.65804 5.74463 5.90618 6.01285 6.06847 6.67883 6.83586 6.88616 7.34166 7.49768 8.88293 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.004107 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.421886 B = 6816.350663 C = 7621.257728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.401 3.599 4 N -0.596 5.596 5 C 0.381 3.619 6 N -0.596 5.596 7 C 0.401 3.599 8 O -0.307 6.307 9 C 0.033 3.967 10 C -0.271 4.271 11 C 0.197 3.803 12 N -0.719 5.719 13 C 0.521 3.479 14 O -0.583 6.583 15 C 0.010 3.990 16 C -0.537 4.537 17 H 0.056 0.944 18 C 0.010 3.990 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.272 1.272 24 H 0.073 0.927 25 H 0.119 0.881 26 H 0.068 0.932 27 H 0.249 0.751 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.403 0.597 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.121 17.654 -10.635 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.211 6.211 3 C 0.216 3.784 4 N -0.331 5.331 5 C 0.094 3.906 6 N -0.331 5.331 7 C 0.216 3.784 8 O -0.211 6.211 9 C -0.061 4.061 10 C -0.278 4.278 11 C 0.072 3.928 12 N -0.372 5.372 13 C 0.311 3.689 14 O -0.463 6.463 15 C -0.029 4.029 16 C -0.575 4.575 17 H 0.074 0.926 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.198 1.198 23 H -0.197 1.197 24 H 0.091 0.909 25 H 0.137 0.863 26 H 0.087 0.913 27 H 0.265 0.735 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.238 0.762 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.962 17.417 -11.118 23.876 hybrid contribution 0.617 -0.900 0.512 1.205 sum -11.345 16.518 -10.605 22.672 Atomic orbital electron populations 1.23267 0.74309 1.05143 1.03405 1.86316 1.25592 1.23588 1.85586 1.19657 0.87855 0.85785 0.85084 1.68313 1.40806 0.98755 1.25177 1.25380 0.86708 0.94930 0.83563 1.68323 1.08194 1.31354 1.25186 1.19655 0.85211 0.88431 0.85088 1.86315 1.15140 1.34041 1.85583 1.23268 1.00245 0.79209 1.03401 1.19470 0.92295 0.94784 1.21264 1.19435 0.97302 0.92075 0.83940 1.46058 1.54092 1.28706 1.08339 1.21452 0.75885 0.78861 0.92745 1.90504 1.53132 1.54731 1.47895 1.19064 0.98083 0.97470 0.88319 1.21343 1.32372 1.10730 0.93062 0.92557 1.25811 0.97417 1.00836 0.94808 1.70031 1.46815 1.41911 0.97790 0.85484 0.79015 0.79099 0.77326 1.19701 1.19823 1.19692 0.90880 0.86330 0.91315 0.73492 0.86333 0.90884 0.91311 0.91594 0.91589 0.76195 0.94150 0.94149 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.41 113.37 1.18 1.73 16 2 O -0.31 -7.86 9.65 -88.48 -0.85 -8.72 16 3 C 0.40 10.20 7.50 84.71 0.63 10.84 16 4 N -0.60 -12.28 9.38 -313.01 -2.94 -15.22 16 5 C 0.38 6.29 12.28 180.91 2.22 8.51 16 6 N -0.60 -12.28 9.38 -313.01 -2.94 -15.22 16 7 C 0.40 10.20 7.50 84.70 0.63 10.84 16 8 O -0.31 -7.87 9.66 -88.47 -0.85 -8.72 16 9 C 0.03 0.55 10.41 113.37 1.18 1.73 16 10 C -0.27 -7.58 5.31 -19.49 -0.10 -7.69 16 11 C 0.20 6.71 5.44 85.63 0.47 7.17 16 12 N -0.72 -27.56 5.55 -466.78 -2.59 -30.15 16 13 C 0.52 25.58 7.82 87.66 0.69 26.26 16 14 O -0.58 -32.53 15.46 -3.03 -0.05 -32.58 16 15 C 0.01 0.55 5.46 29.10 0.16 0.71 16 16 C -0.54 -32.63 8.92 25.60 0.23 -32.40 16 17 H 0.06 3.58 6.75 -2.91 -0.02 3.56 16 18 C 0.01 0.57 5.46 84.66 0.46 1.04 16 19 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 20 Si 0.97 46.16 29.54 68.60 2.03 48.19 16 21 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 24 H 0.07 1.05 8.12 -2.39 -0.02 1.04 16 25 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 27 H 0.25 1.59 8.06 -2.91 -0.02 1.57 16 28 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 30 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 31 H 0.07 2.37 7.63 -2.39 -0.02 2.35 16 32 H 0.07 2.37 7.62 -2.39 -0.02 2.35 16 33 H 0.40 13.78 8.46 -92.71 -0.78 13.00 16 34 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -75.91 321.60 0.17 -75.74 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.33 Total: 12.98 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: 7.75 Total: 28.73 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -8.18 Total: -115.61 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -1.76 Total: -50.02 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -75.91 0.17 -75.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.771 kcal (2) G-P(sol) polarization free energy of solvation -75.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds