Wall clock time and date at job start Tue Mar 31 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86797 * 120.00191 * 2 1 4 4 H 1.48499 * 109.47377 * 270.00255 * 3 2 1 5 5 H 1.48497 * 109.46979 * 30.00153 * 3 2 1 6 6 H 1.48500 * 109.46941 * 150.00153 * 3 2 1 7 7 C 1.40054 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00247 * 186.32659 * 7 2 1 9 9 C 1.41276 * 120.00298 * 6.32572 * 7 2 1 10 10 C 1.40720 * 120.15890 * 173.81957 * 9 7 2 11 11 N 1.31906 * 119.92945 * 179.97438 * 10 9 7 12 12 C 1.32164 * 120.26652 * 0.02562 * 11 10 9 13 13 C 1.39913 * 120.32536 * 359.97438 * 12 11 10 14 14 N 1.38834 * 119.96834 * 179.97438 * 13 12 11 15 15 C 1.46498 * 119.99643 * 0.02562 * 14 13 12 16 16 C 1.53001 * 109.46745 * 180.02562 * 15 14 13 17 17 F 1.39897 * 109.54811 * 59.99552 * 16 15 14 18 18 C 1.53179 * 109.53930 * 299.81817 * 16 15 14 19 19 C 1.53110 * 109.15514 * 183.24344 * 18 16 15 20 20 O 1.42906 * 109.48644 * 57.47709 * 19 18 16 21 21 C 1.42904 * 114.09490 * 298.88700 * 20 19 18 22 22 C 1.53088 * 109.41545 * 61.16121 * 21 20 19 23 23 N 1.32265 * 120.06570 * 0.25828 * 13 12 11 24 24 H 0.97003 * 119.99225 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.03596 * 0.02664 * 10 9 7 26 26 H 1.08007 * 119.83332 * 180.02562 * 12 11 10 27 27 H 0.96993 * 119.99595 * 180.02562 * 14 13 12 28 28 H 1.09005 * 109.47260 * 299.99602 * 15 14 13 29 29 H 1.08994 * 109.47594 * 60.00175 * 15 14 13 30 30 H 1.08996 * 109.52802 * 303.06212 * 18 16 15 31 31 H 1.08996 * 109.52092 * 63.25548 * 18 16 15 32 32 H 1.09002 * 109.40699 * 297.49400 * 19 18 16 33 33 H 1.08998 * 109.49121 * 177.51151 * 19 18 16 34 34 H 1.08999 * 109.48119 * 301.17221 * 21 20 19 35 35 H 1.09005 * 109.48266 * 181.14799 * 21 20 19 36 36 H 1.08998 * 109.52249 * 182.48347 * 22 21 20 37 37 H 1.08997 * 109.57479 * 62.32421 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4000 5 1 1.4389 2.6526 0.7001 6 1 3.5389 1.4400 0.7000 7 6 2.0076 -1.2129 -0.0005 8 1 3.0826 -1.2159 0.1025 9 6 1.3076 -2.4326 -0.1359 10 6 2.0143 -3.6424 -0.2674 11 7 1.3562 -4.7787 -0.3930 12 6 0.0346 -4.7862 -0.3964 13 6 -0.6790 -3.5897 -0.2663 14 7 -2.0672 -3.6061 -0.2713 15 6 -2.7842 -4.8759 -0.4122 16 6 -4.2917 -4.6157 -0.3878 17 9 -4.6373 -3.7662 -1.4443 18 6 -4.6773 -3.9618 0.9426 19 6 -6.1967 -3.7795 0.9911 20 8 -6.8346 -5.0470 0.8216 21 6 -6.5480 -5.6821 -0.4261 22 6 -5.0431 -5.9429 -0.5306 23 7 -0.0323 -2.4424 -0.1442 24 1 -0.4849 0.8401 -0.0004 25 1 3.0942 -3.6407 -0.2647 26 1 -0.4972 -5.7206 -0.4992 27 1 -2.5623 -2.7769 -0.1816 28 1 -2.5119 -5.3439 -1.3583 29 1 -2.5160 -5.5379 0.4111 30 1 -4.3618 -4.6006 1.7675 31 1 -4.1897 -2.9905 1.0258 32 1 -6.5065 -3.1068 0.1913 33 1 -6.4815 -3.3550 1.9538 34 1 -6.8624 -5.0343 -1.2444 35 1 -7.0859 -6.6284 -0.4843 36 1 -4.8169 -6.3871 -1.4999 37 1 -4.7345 -6.6234 0.2629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157357227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:16 Heat of formation + Delta-G solvation = -55.349292 kcal Electronic energy + Delta-G solvation = -22054.608125 eV Core-core repulsion = 18552.966052 eV Total energy + Delta-G solvation = -3501.642073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.77631 -39.16711 -38.82884 -35.91254 -33.95559 -33.15378 -31.53249 -31.38141 -29.32681 -26.77405 -25.86531 -23.99483 -23.07064 -22.28785 -20.94970 -20.12883 -17.54901 -17.19434 -16.43086 -16.23304 -15.76890 -15.61652 -15.19129 -15.13618 -14.87059 -14.59120 -14.42093 -13.66433 -13.53091 -13.06102 -12.68337 -12.66444 -12.60428 -12.38431 -11.63511 -11.59007 -11.45590 -11.36540 -11.26477 -10.74838 -10.59707 -10.51114 -10.36870 -9.91613 -9.71705 -9.66489 -9.40535 -8.38169 -7.41099 -6.76719 -6.46749 -4.67796 2.68697 3.03400 3.06723 3.10174 3.25954 3.63049 3.81003 3.86464 4.29983 4.32406 4.43217 4.59447 4.69759 4.71416 4.99484 5.18613 5.31165 5.36570 5.44811 5.50214 5.63070 5.70455 5.77409 5.87043 5.90720 6.05469 6.14637 6.29743 6.49115 6.74700 6.94546 7.01802 7.10476 7.56312 7.90748 8.01258 8.38256 8.53822 8.82177 9.39213 9.97969 10.17197 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.004325 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.888428 B = 6472.212193 C = 7366.445507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.068 3.932 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.091 0.909 9 C 0.245 3.755 10 C -0.106 4.106 11 N -0.407 5.407 12 C -0.171 4.171 13 C 0.374 3.626 14 N -0.729 5.729 15 C 0.124 3.876 16 C 0.112 3.888 17 F -0.201 7.201 18 C -0.175 4.175 19 C 0.060 3.940 20 O -0.382 6.382 21 C 0.061 3.939 22 C -0.173 4.173 23 N -0.508 5.508 24 H 0.274 0.726 25 H 0.130 0.870 26 H 0.119 0.881 27 H 0.397 0.603 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.098 -5.359 0.613 13.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.448 4.448 8 H 0.109 0.891 9 C 0.117 3.883 10 C -0.276 4.276 11 N -0.119 5.119 12 C -0.333 4.333 13 C 0.130 3.870 14 N -0.367 5.367 15 C -0.003 4.003 16 C 0.094 3.906 17 F -0.182 7.182 18 C -0.213 4.213 19 C -0.017 4.017 20 O -0.301 6.301 21 C -0.016 4.016 22 C -0.211 4.211 23 N -0.234 5.234 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.136 0.864 27 H 0.233 0.767 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.471 -5.515 0.702 13.654 hybrid contribution 0.382 1.231 -0.321 1.328 sum -12.088 -4.285 0.380 12.831 Atomic orbital electron populations 1.70113 1.07387 1.28043 1.27473 1.26135 0.94934 1.01343 0.93457 0.86260 0.80471 0.80384 0.79369 1.19281 1.20114 1.18328 1.19639 0.94965 0.89264 1.40982 0.89113 1.19099 0.87646 0.93249 0.88273 1.22920 0.98989 0.89326 1.16380 1.67506 1.08204 1.30168 1.06005 1.21887 0.90779 0.95734 1.24872 1.19452 0.84757 0.92096 0.90646 1.43944 1.02776 1.07271 1.82731 1.21633 0.88258 0.88128 1.02249 1.21165 0.95062 0.89342 0.85075 1.92869 1.93405 1.72829 1.59106 1.22768 0.97866 1.03749 0.96885 1.22600 0.91044 0.85430 1.02603 1.87930 1.70725 1.34099 1.37354 1.22549 0.94033 0.98335 0.86667 1.22729 0.96913 0.96592 1.04911 1.69026 1.08386 1.22238 1.23756 0.91470 0.85219 0.86384 0.76665 0.91595 0.91009 0.88964 0.88958 0.92509 0.88233 0.92536 0.88297 0.89275 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.32 11.51 55.55 0.64 -17.68 16 2 C 0.07 1.68 5.49 -17.34 -0.10 1.58 16 3 Si 0.91 18.03 29.56 -169.99 -5.03 13.00 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.42 -10.87 9.15 -37.75 -0.35 -11.21 16 8 H 0.09 2.18 7.86 -52.49 -0.41 1.77 16 9 C 0.25 6.75 6.54 -84.83 -0.55 6.19 16 10 C -0.11 -2.75 10.97 -16.58 -0.18 -2.93 16 11 N -0.41 -10.45 10.47 -12.11 -0.13 -10.57 16 12 C -0.17 -4.12 10.49 -16.78 -0.18 -4.29 16 13 C 0.37 9.09 7.66 -155.01 -1.19 7.90 16 14 N -0.73 -14.24 5.38 -60.28 -0.32 -14.57 16 15 C 0.12 1.85 4.11 -4.04 -0.02 1.83 16 16 C 0.11 1.40 0.86 -90.43 -0.08 1.33 16 17 F -0.20 -2.98 15.94 2.25 0.04 -2.95 16 18 C -0.17 -2.06 4.99 -26.58 -0.13 -2.19 16 19 C 0.06 0.64 6.72 37.21 0.25 0.89 16 20 O -0.38 -4.36 10.77 -35.23 -0.38 -4.74 16 21 C 0.06 0.58 6.72 37.20 0.25 0.83 16 22 C -0.17 -1.68 5.21 -26.59 -0.14 -1.82 16 23 N -0.51 -13.88 8.10 -10.14 -0.08 -13.97 16 24 H 0.27 6.40 8.29 -40.82 -0.34 6.06 16 25 H 0.13 3.06 8.06 -52.49 -0.42 2.64 16 26 H 0.12 2.48 6.70 -52.48 -0.35 2.13 16 27 H 0.40 7.85 7.43 -40.82 -0.30 7.54 16 28 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 29 H 0.07 1.01 7.93 -51.93 -0.41 0.59 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.19 6.98 -51.93 -0.36 0.83 16 32 H 0.06 0.62 7.93 -51.93 -0.41 0.20 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.55 7.93 -51.93 -0.41 0.14 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 309.72 15.07 4.67 4.67 Total: -1.00 -30.71 309.72 -7.75 -38.47 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -4.75 Total: 10.24 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.41 Total: -1.90 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.11 Total: -56.78 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.38 Total: -4.74 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.71 -7.75 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157357227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.884 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds