Wall clock time and date at job start Tue Mar 31 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 112.85073 * 190.37299 * 3 2 1 5 5 C 1.39406 * 119.99636 * 49.07503 * 4 3 2 6 6 C 1.38724 * 120.23006 * 7.01966 * 5 4 3 7 7 C 1.38455 * 120.15244 * 179.73657 * 6 5 4 8 8 C 1.37984 * 120.70403 * 0.53891 * 7 6 5 9 9 C 1.39156 * 120.13720 * 359.72071 * 8 7 6 10 10 N 1.38141 * 132.75336 * 179.97438 * 9 8 7 11 11 H 0.97003 * 124.69350 * 359.97438 * 10 9 8 12 12 C 1.35651 * 110.60910 * 180.02562 * 10 9 8 13 13 C 1.38961 * 109.24588 * 359.97438 * 12 10 9 14 14 C 1.40907 * 126.93302 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00557 * 201.13878 * 14 13 12 16 16 C 1.39683 * 119.99963 * 21.14882 * 14 13 12 17 17 N 1.31085 * 119.99512 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99857 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47398 * 59.99802 * 18 16 14 20 20 H 1.48502 * 109.46913 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46856 * 299.99301 * 18 16 14 22 22 C 1.39770 * 120.22677 * 187.28684 * 5 4 3 23 23 C 1.53786 * 113.69223 * 321.63790 * 3 2 1 24 24 C 1.53788 * 87.07951 * 89.13022 * 23 3 2 25 25 C 1.53778 * 113.61725 * 59.17821 * 3 2 1 26 26 H 0.96999 * 120.00315 * 228.80362 * 4 3 2 27 27 H 1.07997 * 119.92433 * 359.97438 * 6 5 4 28 28 H 1.08000 * 119.64994 * 180.29935 * 7 6 5 29 29 H 1.08009 * 119.93140 * 179.73937 * 8 7 6 30 30 H 1.07999 * 125.37970 * 180.02562 * 12 10 9 31 31 H 0.97005 * 119.99367 * 180.02562 * 17 16 14 32 32 H 1.09001 * 113.61520 * 203.67734 * 23 3 2 33 33 H 1.08993 * 113.61245 * 334.58347 * 23 3 2 34 34 H 1.08997 * 113.61216 * 270.88554 * 24 23 3 35 35 H 1.08994 * 113.61470 * 139.97982 * 24 23 3 36 36 H 1.09000 * 113.61677 * 25.34303 * 25 3 2 37 37 H 1.09001 * 113.61824 * 156.25229 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.1763 1.3289 0.2431 5 6 2.7178 2.0983 1.3113 6 6 1.8314 1.5580 2.2315 7 6 1.3812 2.3218 3.2949 8 6 1.7962 3.6287 3.4492 9 6 2.6809 4.1933 2.5353 10 7 3.2551 5.4459 2.4370 11 1 3.1003 6.1745 3.0584 12 6 4.0645 5.5162 1.3507 13 6 4.0500 4.2944 0.6889 14 6 4.7575 3.9574 -0.4822 15 1 4.4278 3.1301 -1.0932 16 6 5.8855 4.6932 -0.8528 17 7 6.2855 5.6976 -0.1114 18 14 6.8238 4.2460 -2.4049 19 1 5.9210 4.3577 -3.5787 20 1 7.9723 5.1723 -2.5732 21 1 7.3245 2.8522 -2.2963 22 6 3.1437 3.4213 1.4595 23 6 3.2264 -1.1033 0.8740 24 6 3.1740 -2.0075 -0.3689 25 6 3.2244 -0.7210 -1.2100 26 1 3.8744 1.6714 -0.3369 27 1 1.4946 0.5379 2.1203 28 1 0.6950 1.8915 4.0092 29 1 1.4339 4.2146 4.2810 30 1 4.6313 6.3844 1.0484 31 1 7.0686 6.2088 -0.3690 32 1 4.2393 -0.8792 1.2085 33 1 2.5760 -1.4352 1.6831 34 1 2.2387 -2.5582 -0.4690 35 1 4.0537 -2.6403 -0.4858 36 1 2.5723 -0.7444 -2.0831 37 1 4.2368 -0.3925 -1.4452 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162315721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:00 Heat of formation + Delta-G solvation = 108.065974 kcal Electronic energy + Delta-G solvation = -21456.753614 eV Core-core repulsion = 18392.966984 eV Total energy + Delta-G solvation = -3063.786630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17768 -39.31787 -35.96029 -35.60640 -33.93159 -32.88848 -29.82708 -28.02110 -27.54201 -25.81450 -25.41765 -24.45357 -21.42815 -20.95672 -20.55066 -19.45901 -17.64407 -16.89015 -16.00595 -15.79127 -15.43314 -14.79562 -14.61913 -14.42505 -13.86863 -13.45291 -13.19771 -12.91604 -12.68903 -12.58978 -12.45608 -12.36072 -11.81598 -11.51167 -11.33204 -11.26844 -11.18829 -11.02155 -10.85520 -10.73717 -10.51365 -10.31807 -9.88338 -9.80350 -9.36262 -9.12276 -7.54837 -7.01871 -6.50897 -6.13099 -4.02560 2.38834 2.68460 2.83574 2.85484 3.08355 3.14168 3.15666 3.87083 4.04394 4.10024 4.23696 4.48146 4.52486 4.60201 4.79528 4.94802 5.15228 5.53007 5.59337 5.69403 5.77634 5.79789 5.90221 5.94792 6.02929 6.10906 6.22980 6.45413 6.59103 6.81072 7.06995 7.12098 7.22252 7.45089 7.49108 7.70215 7.79817 7.86918 8.13097 8.34033 8.47585 8.68170 9.00468 9.11300 9.21077 10.50850 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.007695 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.775223 B = 3637.741518 C = 5392.814538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.228 3.772 3 C 0.247 3.753 4 N -0.723 5.723 5 C 0.266 3.734 6 C -0.266 4.266 7 C -0.070 4.070 8 C -0.199 4.199 9 C 0.117 3.883 10 N -0.588 5.588 11 H 0.394 0.606 12 C -0.087 4.087 13 C 0.034 3.966 14 C -0.433 4.433 15 H 0.066 0.934 16 C 0.063 3.937 17 N -0.832 5.832 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.269 1.269 22 C -0.177 4.177 23 C -0.133 4.133 24 C -0.142 4.142 25 C -0.127 4.127 26 H 0.418 0.582 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.174 0.826 31 H 0.273 0.727 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 -9.287 0.573 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.091 4.091 3 C 0.154 3.846 4 N -0.358 5.358 5 C 0.164 3.836 6 C -0.291 4.291 7 C -0.090 4.090 8 C -0.222 4.222 9 C 0.004 3.996 10 N -0.188 5.188 11 H 0.227 0.773 12 C -0.210 4.210 13 C 0.029 3.971 14 C -0.466 4.466 15 H 0.084 0.916 16 C -0.148 4.148 17 N -0.463 5.463 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.194 1.194 22 C -0.187 4.187 23 C -0.174 4.174 24 C -0.180 4.180 25 C -0.166 4.166 26 H 0.260 0.740 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.191 0.809 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.805 -9.093 0.534 9.531 hybrid contribution 1.054 0.499 -0.510 1.273 sum -1.750 -8.594 0.024 8.770 Atomic orbital electron populations 1.81136 1.12535 1.07451 1.08747 1.28657 0.94384 0.93278 0.92798 1.18459 0.80932 0.85768 0.99402 1.44733 1.43286 1.15032 1.32790 1.17113 0.91633 0.88328 0.86518 1.20025 1.08738 1.00076 1.00230 1.20105 0.98918 0.93102 0.96914 1.19583 1.05180 0.96200 1.01234 1.17903 0.98205 0.86437 0.97052 1.41461 1.41183 1.10254 1.25884 0.77285 1.22601 1.04596 1.01224 0.92618 1.17868 0.94982 0.89388 0.94866 1.18456 1.08640 1.13641 1.05905 0.91564 1.25589 0.97102 0.94695 0.97379 1.69684 1.23322 1.16975 1.36278 0.86378 0.79106 0.78989 0.82183 1.19468 1.20747 1.19411 1.18957 1.07551 0.92214 1.00008 1.23523 1.02752 0.93975 0.97116 1.22815 1.02894 0.96189 0.96079 1.23280 1.02483 0.94954 0.95867 0.73971 0.88170 0.87846 0.88449 0.80929 0.91684 0.87509 0.90653 0.89971 0.89972 0.90177 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.68 18.54 42.15 0.78 -6.89 16 2 C 0.23 3.75 11.32 -20.76 -0.24 3.51 16 3 C 0.25 3.53 1.02 -133.79 -0.14 3.39 16 4 N -0.72 -13.02 5.47 -47.72 -0.26 -13.28 16 5 C 0.27 5.61 6.43 -83.66 -0.54 5.07 16 6 C -0.27 -5.23 8.47 -39.32 -0.33 -5.56 16 7 C -0.07 -1.34 10.00 -39.59 -0.40 -1.74 16 8 C -0.20 -3.97 10.07 -39.33 -0.40 -4.36 16 9 C 0.12 2.64 7.23 -83.92 -0.61 2.03 16 10 N -0.59 -12.75 5.99 -9.80 -0.06 -12.81 16 11 H 0.39 7.04 8.96 -40.82 -0.37 6.68 16 12 C -0.09 -2.15 10.78 -15.60 -0.17 -2.31 16 13 C 0.03 0.88 5.99 -104.81 -0.63 0.25 16 14 C -0.43 -10.90 8.74 -38.03 -0.33 -11.24 16 15 H 0.07 1.55 5.82 -52.49 -0.31 1.25 16 16 C 0.06 1.55 5.47 -17.33 -0.09 1.46 16 17 N -0.83 -21.14 10.78 55.54 0.60 -20.54 16 18 Si 0.91 18.46 29.56 -169.99 -5.02 13.43 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 C -0.18 -4.25 6.27 -104.76 -0.66 -4.90 16 23 C -0.13 -1.54 6.94 -25.91 -0.18 -1.72 16 24 C -0.14 -1.30 7.79 -25.91 -0.20 -1.50 16 25 C -0.13 -1.37 7.34 -25.92 -0.19 -1.56 16 26 H 0.42 7.75 5.73 -40.82 -0.23 7.51 16 27 H 0.10 1.82 5.06 -52.49 -0.27 1.56 16 28 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 29 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.17 4.40 6.33 -52.49 -0.33 4.07 16 31 H 0.27 6.47 8.30 -40.82 -0.34 6.13 16 32 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 0.86 7.83 -51.93 -0.41 0.45 16 34 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.11 1.07 8.12 -51.93 -0.42 0.65 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -29.01 310.30 -8.38 -37.39 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -4.00 Total: 17.20 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -5.09 Total: -19.18 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 1.06 Total: -53.52 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.01 -8.38 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162315721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.461 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds