Wall clock time and date at job start Tue Mar 31 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 112.85073 * 190.37299 * 3 2 1 5 5 C 1.39406 * 119.99636 * 49.07503 * 4 3 2 6 6 C 1.38724 * 120.23006 * 7.01966 * 5 4 3 7 7 C 1.38455 * 120.15244 * 179.73657 * 6 5 4 8 8 C 1.37984 * 120.70403 * 0.53891 * 7 6 5 9 9 C 1.39156 * 120.13720 * 359.72071 * 8 7 6 10 10 N 1.38141 * 132.75336 * 179.97438 * 9 8 7 11 11 H 0.97003 * 124.69350 * 359.97438 * 10 9 8 12 12 C 1.35651 * 110.60910 * 180.02562 * 10 9 8 13 13 C 1.38961 * 109.24588 * 359.97438 * 12 10 9 14 14 C 1.40907 * 126.93302 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00557 * 201.13878 * 14 13 12 16 16 C 1.39683 * 119.99963 * 21.14882 * 14 13 12 17 17 N 1.31085 * 119.99512 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99857 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47398 * 59.99802 * 18 16 14 20 20 H 1.48502 * 109.46913 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46856 * 299.99301 * 18 16 14 22 22 C 1.39770 * 120.22677 * 187.28684 * 5 4 3 23 23 C 1.53786 * 113.69223 * 321.63790 * 3 2 1 24 24 C 1.53788 * 87.07951 * 89.13022 * 23 3 2 25 25 C 1.53778 * 113.61725 * 59.17821 * 3 2 1 26 26 H 0.96999 * 120.00315 * 228.80362 * 4 3 2 27 27 H 1.07997 * 119.92433 * 359.97438 * 6 5 4 28 28 H 1.08000 * 119.64994 * 180.29935 * 7 6 5 29 29 H 1.08009 * 119.93140 * 179.73937 * 8 7 6 30 30 H 1.07999 * 125.37970 * 180.02562 * 12 10 9 31 31 H 0.97005 * 119.99367 * 180.02562 * 17 16 14 32 32 H 1.09001 * 113.61520 * 203.67734 * 23 3 2 33 33 H 1.08993 * 113.61245 * 334.58347 * 23 3 2 34 34 H 1.08997 * 113.61216 * 270.88554 * 24 23 3 35 35 H 1.08994 * 113.61470 * 139.97982 * 24 23 3 36 36 H 1.09000 * 113.61677 * 25.34303 * 25 3 2 37 37 H 1.09001 * 113.61824 * 156.25229 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.1763 1.3289 0.2431 5 6 2.7178 2.0983 1.3113 6 6 1.8314 1.5580 2.2315 7 6 1.3812 2.3218 3.2949 8 6 1.7962 3.6287 3.4492 9 6 2.6809 4.1933 2.5353 10 7 3.2551 5.4459 2.4370 11 1 3.1003 6.1745 3.0584 12 6 4.0645 5.5162 1.3507 13 6 4.0500 4.2944 0.6889 14 6 4.7575 3.9574 -0.4822 15 1 4.4278 3.1301 -1.0932 16 6 5.8855 4.6932 -0.8528 17 7 6.2855 5.6976 -0.1114 18 14 6.8238 4.2460 -2.4049 19 1 5.9210 4.3577 -3.5787 20 1 7.9723 5.1723 -2.5732 21 1 7.3245 2.8522 -2.2963 22 6 3.1437 3.4213 1.4595 23 6 3.2264 -1.1033 0.8740 24 6 3.1740 -2.0075 -0.3689 25 6 3.2244 -0.7210 -1.2100 26 1 3.8744 1.6714 -0.3369 27 1 1.4946 0.5379 2.1203 28 1 0.6950 1.8915 4.0092 29 1 1.4339 4.2146 4.2810 30 1 4.6313 6.3844 1.0484 31 1 7.0686 6.2088 -0.3690 32 1 4.2393 -0.8792 1.2085 33 1 2.5760 -1.4352 1.6831 34 1 2.2387 -2.5582 -0.4690 35 1 4.0537 -2.6403 -0.4858 36 1 2.5723 -0.7444 -2.0831 37 1 4.2368 -0.3925 -1.4452 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162315721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:59 Heat of formation + Delta-G solvation = 91.807750 kcal Electronic energy + Delta-G solvation = -21457.458623 eV Core-core repulsion = 18392.966984 eV Total energy + Delta-G solvation = -3064.491640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.59022 -40.66975 -37.48273 -36.92371 -35.60795 -34.46360 -31.52100 -29.62669 -29.16327 -26.80054 -26.73504 -26.05744 -22.91954 -22.30602 -21.90649 -21.21573 -19.17493 -18.25151 -17.59331 -17.18291 -16.95321 -16.15908 -16.02260 -15.74959 -15.32944 -14.94353 -14.73775 -14.41583 -14.17019 -14.00506 -13.86938 -13.32309 -13.18471 -13.05124 -12.99742 -12.82859 -12.49178 -12.42416 -12.25460 -11.93413 -11.67457 -11.65361 -11.48763 -11.36603 -11.04282 -10.70851 -9.25749 -8.71482 -8.33399 -7.78551 -5.91430 0.77395 1.07354 1.46277 1.48701 1.52018 1.57569 1.59893 2.32267 2.42236 2.69600 2.78769 2.96825 3.21403 3.50186 3.60631 3.72010 3.91068 4.27167 4.32734 4.42234 4.63997 4.79596 4.83721 4.86426 4.96555 5.02782 5.07254 5.14405 5.18396 5.36590 5.37512 5.45192 5.54213 5.79372 5.91637 6.02895 6.11550 6.42186 6.48717 6.70314 6.86415 6.96891 7.18129 7.29106 7.45227 8.68964 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.007695 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.775223 B = 3637.741518 C = 5392.814538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.241 3.759 3 C 0.226 3.774 4 N -0.723 5.723 5 C 0.260 3.740 6 C -0.269 4.269 7 C -0.064 4.064 8 C -0.209 4.209 9 C 0.107 3.893 10 N -0.583 5.583 11 H 0.409 0.591 12 C -0.108 4.108 13 C 0.004 3.996 14 C -0.456 4.456 15 H 0.075 0.925 16 C 0.018 3.982 17 N -0.863 5.863 18 Si 0.977 3.023 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.254 1.254 22 C -0.216 4.216 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.122 4.122 26 H 0.413 0.587 27 H 0.116 0.884 28 H 0.138 0.862 29 H 0.125 0.875 30 H 0.159 0.841 31 H 0.275 0.725 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 -11.681 0.319 11.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.078 4.078 3 C 0.134 3.866 4 N -0.356 5.356 5 C 0.156 3.844 6 C -0.294 4.294 7 C -0.084 4.084 8 C -0.232 4.232 9 C -0.006 4.006 10 N -0.185 5.185 11 H 0.245 0.755 12 C -0.232 4.232 13 C -0.002 4.002 14 C -0.489 4.489 15 H 0.093 0.907 16 C -0.190 4.190 17 N -0.494 5.494 18 Si 0.800 3.200 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.178 1.178 22 C -0.226 4.226 23 C -0.169 4.169 24 C -0.161 4.161 25 C -0.161 4.161 26 H 0.254 0.746 27 H 0.133 0.867 28 H 0.156 0.844 29 H 0.143 0.857 30 H 0.176 0.824 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.830 -11.510 0.292 11.857 hybrid contribution 0.970 1.202 -0.368 1.588 sum -1.860 -10.309 -0.076 10.475 Atomic orbital electron populations 1.81143 1.13615 1.08493 1.10160 1.29076 0.94792 0.92261 0.91674 1.19142 0.79842 0.84628 1.02946 1.44850 1.42939 1.16158 1.31692 1.17299 0.91614 0.87871 0.87586 1.20273 1.08266 1.00848 1.00037 1.20579 0.98266 0.92660 0.96896 1.19892 1.04807 0.96926 1.01605 1.18347 0.98437 0.86414 0.97412 1.41305 1.40828 1.10833 1.25582 0.75547 1.22406 1.05802 1.00891 0.94142 1.18303 0.95885 0.90322 0.95680 1.18786 1.09340 1.14422 1.06351 0.90674 1.26465 0.97785 0.94368 1.00363 1.69805 1.23774 1.17899 1.37901 0.85308 0.77490 0.79252 0.77995 1.19176 1.20753 1.17835 1.19256 1.08619 0.93811 1.00889 1.23535 1.02446 0.93062 0.97907 1.22780 1.04501 0.95461 0.93334 1.23387 1.02771 0.94941 0.94982 0.74555 0.86667 0.84447 0.85747 0.82392 0.91528 0.87317 0.90468 0.89299 0.87321 0.89510 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.11 18.54 20.01 0.37 -15.74 16 2 C 0.24 7.55 11.32 89.44 1.01 8.56 16 3 C 0.23 6.05 1.02 2.32 0.00 6.05 16 4 N -0.72 -25.58 5.47 -304.89 -1.67 -27.24 16 5 C 0.26 10.89 6.43 38.42 0.25 11.14 16 6 C -0.27 -10.18 8.47 22.44 0.19 -9.99 16 7 C -0.06 -2.31 10.00 22.26 0.22 -2.09 16 8 C -0.21 -8.04 10.07 22.43 0.23 -7.81 16 9 C 0.11 4.84 7.23 38.86 0.28 5.12 16 10 N -0.58 -25.96 5.99 -184.93 -1.11 -27.07 16 11 H 0.41 14.93 8.96 -92.71 -0.83 14.10 16 12 C -0.11 -5.61 10.78 84.28 0.91 -4.70 16 13 C 0.00 0.19 5.99 -19.99 -0.12 0.07 16 14 C -0.46 -23.52 8.74 23.27 0.20 -23.31 16 15 H 0.08 3.58 5.82 -2.91 -0.02 3.56 16 16 C 0.02 0.90 5.47 85.15 0.47 1.36 16 17 N -0.86 -45.19 10.78 21.79 0.23 -44.96 16 18 Si 0.98 37.85 29.56 68.60 2.03 39.88 16 19 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 20 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 22 C -0.22 -10.52 6.27 -19.95 -0.13 -10.65 16 23 C -0.13 -2.65 6.94 31.12 0.22 -2.43 16 24 C -0.12 -1.80 7.79 31.13 0.24 -1.56 16 25 C -0.12 -2.30 7.34 31.12 0.23 -2.07 16 26 H 0.41 15.26 5.73 -92.71 -0.53 14.73 16 27 H 0.12 3.95 5.06 -2.91 -0.01 3.94 16 28 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 29 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.16 8.54 6.33 -2.91 -0.02 8.53 16 31 H 0.27 13.39 8.30 -92.70 -0.77 12.62 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 1.55 7.83 -2.39 -0.02 1.53 16 34 H 0.09 1.23 8.13 -2.39 -0.02 1.21 16 35 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.53 8.08 -2.39 -0.02 1.52 16 37 H 0.12 2.01 8.12 -2.39 -0.02 2.00 16 Total: -1.00 -64.34 310.30 3.84 -60.50 By element: Atomic # 1 Polarization: 47.16 SS G_CDS: -0.22 Total: 46.94 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.20 Total: -32.31 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -2.17 Total: -115.01 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -64.34 3.84 -60.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162315721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.312 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds