Wall clock time and date at job start Tue Mar 31 2020 05:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45192 * 109.47410 * 2 1 4 4 C 1.34710 * 117.00333 * 179.97438 * 3 2 1 5 5 O 1.21474 * 119.99593 * 0.02562 * 4 3 2 6 6 C 1.47718 * 120.00346 * 180.02562 * 4 3 2 7 7 C 1.39901 * 121.14719 * 0.02562 * 6 4 3 8 8 C 1.39421 * 117.80331 * 179.97438 * 7 6 4 9 9 N 1.39048 * 120.02103 * 180.02562 * 8 7 6 10 10 C 1.36875 * 120.00134 * 359.97438 * 9 8 7 11 11 H 1.08000 * 119.99382 * 359.72812 * 10 9 8 12 12 C 1.38798 * 119.99912 * 179.72747 * 10 9 8 13 13 N 1.31575 * 120.00319 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99655 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47151 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47196 * 120.00221 * 14 12 10 17 17 H 1.48503 * 109.47243 * 240.00083 * 14 12 10 18 18 N 1.32479 * 119.95472 * 0.27112 * 8 7 6 19 19 N 1.28270 * 122.51992 * 359.42268 * 18 8 7 20 20 C 1.32374 * 122.34239 * 0.59217 * 19 18 8 21 21 O 1.35503 * 120.16451 * 179.72868 * 20 19 18 22 22 C 1.42896 * 117.00149 * 359.97438 * 21 20 19 23 23 C 1.52996 * 109.47642 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47384 * 299.99992 * 1 2 3 25 25 H 1.09005 * 109.46977 * 59.99419 * 1 2 3 26 26 H 1.08996 * 109.47434 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46733 * 240.00244 * 2 1 3 28 28 H 1.08997 * 109.47131 * 120.00862 * 2 1 3 29 29 H 1.08003 * 121.09552 * 359.95663 * 7 6 4 30 30 H 0.97000 * 120.00535 * 179.73059 * 9 8 7 31 31 H 0.96999 * 120.00120 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.47139 * 300.00447 * 22 21 20 33 33 H 1.09005 * 109.47025 * 59.99800 * 22 21 20 34 34 H 1.08990 * 109.47554 * 180.02562 * 23 22 21 35 35 H 1.09002 * 109.46875 * 300.00039 * 23 22 21 36 36 H 1.08997 * 109.47006 * 59.99682 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3495 1.5454 0.0005 5 8 4.0894 0.5820 0.0005 6 6 3.9142 2.9104 0.0011 7 6 3.0844 4.0367 0.0017 8 6 3.6916 5.2918 0.0028 9 7 2.9108 6.4423 0.0040 10 6 1.5457 6.3431 0.0035 11 1 1.0751 5.3710 -0.0023 12 6 0.7664 7.4916 0.0103 13 7 1.3398 8.6758 0.0178 14 14 -1.0967 7.3560 0.0104 15 1 -1.4888 5.9237 0.0018 16 1 -1.6407 8.0114 1.2267 17 1 -1.6418 8.0251 -1.1982 18 7 5.0130 5.3873 -0.0021 19 7 5.7788 4.3584 0.0029 20 6 5.3044 3.1225 0.0018 21 8 6.1542 2.0670 0.0017 22 6 7.5528 2.3601 0.0022 23 6 8.3479 1.0530 0.0027 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.0090 3.9373 0.0010 30 1 3.3335 7.3154 0.0087 31 1 0.7952 9.4784 0.0222 32 1 7.8032 2.9379 -0.8874 33 1 7.8027 2.9373 0.8925 34 1 9.4146 1.2766 0.0035 35 1 8.0973 0.4757 0.8927 36 1 8.0980 0.4755 -0.8873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:53 Heat of formation + Delta-G solvation = -63.564165 kcal Electronic energy + Delta-G solvation = -21817.810293 eV Core-core repulsion = 18303.439208 eV Total energy + Delta-G solvation = -3514.371086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56937 -39.56021 -37.92954 -36.25292 -35.67096 -32.79921 -32.39201 -31.56161 -30.91674 -28.78889 -25.31038 -25.23137 -23.77740 -22.61814 -21.97356 -20.81812 -18.65268 -17.78123 -17.58236 -16.77766 -16.51312 -16.40992 -15.75916 -15.34627 -14.36098 -14.21751 -13.99900 -13.72604 -13.66918 -13.39454 -12.98402 -12.79115 -12.51579 -12.30918 -11.91457 -11.87246 -11.55392 -11.54310 -11.23383 -10.92367 -10.91293 -10.63394 -10.47140 -10.40661 -10.34637 -10.26086 -9.45643 -8.96304 -8.71582 -7.28953 -6.84233 -4.04443 0.97670 2.02097 2.79871 2.92875 3.03892 3.06364 3.08252 3.56996 3.80750 4.33303 4.51653 4.88092 4.91616 4.94103 5.01252 5.14055 5.26570 5.28207 5.32421 5.49592 5.61289 5.73680 5.74970 5.76511 5.91626 5.96205 6.06288 6.08915 6.20181 6.34835 6.60380 6.81280 6.99291 7.42123 7.88475 8.05548 8.43642 8.90293 9.11067 9.79029 10.30768 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.005731 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.803145 B = 4884.816349 C = 6874.561512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.353 6.353 4 C 0.518 3.482 5 O -0.487 6.487 6 C -0.100 4.100 7 C -0.091 4.091 8 C 0.265 3.735 9 N -0.510 5.510 10 C -0.310 4.310 11 H 0.108 0.892 12 C 0.030 3.970 13 N -0.871 5.871 14 Si 0.938 3.062 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.276 1.276 18 N -0.305 5.305 19 N -0.245 5.245 20 C 0.181 3.819 21 O -0.289 6.289 22 C 0.064 3.936 23 C -0.148 4.148 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.159 0.841 30 H 0.411 0.589 31 H 0.281 0.719 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -12.005 -0.013 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.271 6.271 4 C 0.361 3.639 5 O -0.374 6.374 6 C -0.112 4.112 7 C -0.128 4.128 8 C 0.018 3.982 9 N -0.120 5.120 10 C -0.440 4.440 11 H 0.125 0.875 12 C -0.177 4.177 13 N -0.506 5.506 14 Si 0.763 3.237 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.202 1.202 18 N -0.168 5.168 19 N -0.101 5.101 20 C -0.012 4.012 21 O -0.195 6.195 22 C -0.012 4.012 23 C -0.205 4.205 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.176 0.824 30 H 0.248 0.752 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.367 -11.390 -0.016 11.472 hybrid contribution -1.812 -0.417 0.006 1.859 sum -0.445 -11.806 -0.010 11.815 Atomic orbital electron populations 1.21808 0.92704 1.02672 1.03816 1.22977 0.95245 0.80367 1.02424 1.86585 1.23966 1.31976 1.84527 1.20833 0.80379 0.89453 0.73254 1.90833 1.60132 1.41779 1.44640 1.19041 0.91000 0.91042 1.10116 1.21992 1.01431 0.89835 0.99534 1.19682 0.89962 0.87943 1.00597 1.40682 1.04939 1.04404 1.61967 1.19832 0.79922 0.95288 1.48991 0.87452 1.25396 1.01672 0.94363 0.96232 1.69699 1.37487 0.97974 1.45486 0.85671 0.80525 0.79181 0.78325 1.18738 1.20177 1.20181 1.72440 1.01712 1.20106 1.22517 1.72660 1.29821 0.94610 1.13019 1.20553 0.87176 0.88070 1.05359 1.86282 1.16354 1.27629 1.89196 1.22480 0.79184 0.97588 1.01935 1.21746 0.98741 0.96982 1.03062 0.91339 0.91345 0.90448 0.91348 0.91346 0.82399 0.75222 0.90895 0.92216 0.92227 0.90942 0.91963 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.35 -5.78 9.61 -40.52 -0.39 -6.17 16 4 C 0.52 9.79 7.92 34.60 0.27 10.06 16 5 O -0.49 -9.82 15.10 -26.37 -0.40 -10.22 16 6 C -0.10 -2.05 5.93 -104.50 -0.62 -2.67 16 7 C -0.09 -1.89 8.99 -38.52 -0.35 -2.23 16 8 C 0.27 6.02 7.71 -154.80 -1.19 4.83 16 9 N -0.51 -12.05 5.45 -11.07 -0.06 -12.11 16 10 C -0.31 -7.27 9.55 -15.09 -0.14 -7.42 16 11 H 0.11 2.35 5.70 -52.49 -0.30 2.05 16 12 C 0.03 0.71 5.50 -17.45 -0.10 0.62 16 13 N -0.87 -21.63 13.05 55.49 0.72 -20.91 16 14 Si 0.94 18.07 29.55 -169.99 -5.02 13.05 16 15 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 16 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 18 N -0.31 -7.07 11.51 31.22 0.36 -6.71 16 19 N -0.25 -5.40 10.39 30.76 0.32 -5.08 16 20 C 0.18 3.83 7.60 -16.42 -0.12 3.70 16 21 O -0.29 -5.70 8.35 -39.43 -0.33 -6.03 16 22 C 0.06 1.01 6.04 37.16 0.22 1.23 16 23 C -0.15 -1.81 10.28 37.16 0.38 -1.43 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.16 3.05 5.74 -52.48 -0.30 2.74 16 30 H 0.41 10.07 8.01 -40.82 -0.33 9.75 16 31 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 32 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 319.45 15.07 4.81 4.81 Total: -1.00 -27.72 319.45 -5.30 -33.02 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.29 Total: 9.71 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -1.03 Total: 6.65 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 1.34 Total: -44.81 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.12 Total: -22.42 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.02 Total: 13.05 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.72 -5.30 -33.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.546 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds