Wall clock time and date at job start Tue Mar 31 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86789 * 120.00185 * 2 1 4 4 H 1.48502 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47145 * 299.99860 * 3 2 1 6 6 H 1.48496 * 109.47245 * 59.99696 * 3 2 1 7 7 C 1.38814 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99962 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00361 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99788 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46617 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46956 * 179.97438 * 11 10 9 13 13 N 1.46508 * 109.47115 * 179.97438 * 12 11 10 14 14 C 1.34768 * 119.99714 * 180.02562 * 13 12 11 15 15 O 1.21275 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99766 * 179.97438 * 14 13 12 17 17 C 1.50703 * 109.47028 * 179.97438 * 16 14 13 18 18 N 1.31865 * 119.63513 * 269.97634 * 17 16 14 19 19 C 1.31845 * 121.75130 * 179.67786 * 18 17 16 20 20 C 1.38238 * 120.81726 * 0.64271 * 19 18 17 21 21 C 1.38588 * 119.18753 * 359.39683 * 20 19 18 22 22 C 1.38413 * 119.63374 * 90.00169 * 17 16 14 23 23 F 1.35101 * 120.44736 * 359.97438 * 22 17 16 24 24 H 0.96993 * 120.00064 * 0.02562 * 1 2 3 25 25 H 0.96996 * 119.99367 * 359.97438 * 9 7 2 26 26 H 1.08997 * 109.47554 * 60.00294 * 10 9 7 27 27 H 1.08996 * 109.47220 * 299.99557 * 10 9 7 28 28 H 1.08999 * 109.47478 * 60.00285 * 11 10 9 29 29 H 1.09000 * 109.47518 * 299.99952 * 11 10 9 30 30 H 1.08999 * 109.46612 * 59.99978 * 12 11 10 31 31 H 1.08996 * 109.47233 * 299.99915 * 12 11 10 32 32 H 0.96994 * 119.99650 * 0.02562 * 13 12 11 33 33 H 1.09002 * 109.46983 * 59.99781 * 16 14 13 34 34 H 1.08996 * 109.47122 * 299.99882 * 16 14 13 35 35 H 1.08000 * 119.59812 * 180.31887 * 19 18 17 36 36 H 1.08002 * 120.40978 * 179.67953 * 20 19 18 37 37 H 1.07999 * 120.80386 * 180.30037 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 6 1.8287 -6.1448 0.0005 13 7 0.8766 -7.2584 0.0018 14 6 1.3259 -8.5290 0.0020 15 8 2.5182 -8.7506 0.0007 16 6 0.3465 -9.6744 0.0038 17 6 1.1001 -10.9796 0.0031 18 7 1.4239 -11.5448 -1.1434 19 6 2.0880 -12.6827 -1.1928 20 6 2.4605 -13.3362 -0.0330 21 6 2.1384 -12.7747 1.1924 22 6 1.4441 -11.5719 1.2058 23 9 1.1094 -10.9877 2.3771 24 1 -0.4850 0.8400 -0.0004 25 1 0.3555 -2.3881 0.0005 26 1 2.6846 -3.7146 0.8905 27 1 2.6846 -3.7146 -0.8894 28 1 0.4367 -4.7622 -0.8886 29 1 0.4373 -4.7618 0.8914 30 1 2.4560 -6.2025 0.8901 31 1 2.4547 -6.2025 -0.8899 32 1 -0.0770 -7.0810 0.0024 33 1 -0.2812 -9.6172 -0.8854 34 1 -0.2790 -9.6162 0.8945 35 1 2.3397 -13.1123 -2.1512 36 1 2.9999 -14.2707 -0.0811 37 1 2.4208 -13.2604 2.1148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164580197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:55 Heat of formation + Delta-G solvation = -43.285867 kcal Electronic energy + Delta-G solvation = -20454.725726 eV Core-core repulsion = 16953.606762 eV Total energy + Delta-G solvation = -3501.118963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.31247 -40.64597 -39.43927 -36.05937 -34.34615 -33.60264 -32.33156 -31.89446 -29.83267 -28.42462 -25.22934 -23.97856 -23.27461 -22.34212 -21.22244 -20.32664 -18.07753 -17.64582 -17.42994 -16.92293 -16.83543 -15.96808 -15.77764 -15.71646 -14.61774 -14.56963 -14.34280 -14.04361 -13.98798 -13.52435 -13.37518 -13.27316 -12.96770 -12.75233 -12.41661 -12.08369 -11.64015 -10.95871 -10.92625 -10.78065 -10.62051 -10.34655 -10.07680 -10.00320 -9.92341 -9.70608 -9.21043 -9.07110 -8.88224 -6.93207 -5.77160 -3.06001 0.50849 0.69853 2.55145 2.94709 3.38402 3.43945 3.49713 3.52022 3.62157 3.86755 4.16921 4.29924 4.51164 4.59336 4.68926 4.89921 4.98322 5.14559 5.16571 5.31895 5.32023 5.44561 5.57557 5.58261 5.63500 5.98734 6.07122 6.18671 6.21116 6.32437 6.43789 6.79450 6.83698 7.42133 7.46103 7.70988 8.13587 8.41932 9.53063 10.10171 10.44876 11.45975 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.049896 B = 0.002293 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.037313 B =12206.879603 C =12288.938867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.137 4.137 12 C 0.123 3.877 13 N -0.725 5.725 14 C 0.520 3.480 15 O -0.537 6.537 16 C -0.098 4.098 17 C 0.127 3.873 18 N -0.448 5.448 19 C 0.093 3.907 20 C -0.146 4.146 21 C -0.108 4.108 22 C 0.061 3.939 23 F -0.127 7.127 24 H 0.255 0.745 25 H 0.384 0.616 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.402 0.598 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.165 0.835 36 H 0.146 0.854 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -29.502 0.693 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.001 4.001 13 N -0.377 5.377 14 C 0.305 3.695 15 O -0.414 6.414 16 C -0.139 4.139 17 C -0.013 4.013 18 N -0.156 5.156 19 C -0.064 4.064 20 C -0.166 4.166 21 C -0.135 4.135 22 C 0.040 3.960 23 F -0.105 7.105 24 H 0.064 0.936 25 H 0.217 0.783 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.236 0.764 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.182 0.818 36 H 0.163 0.837 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.417 -29.094 -0.043 29.097 hybrid contribution -0.110 0.698 1.024 1.244 sum 0.307 -28.396 0.980 28.414 Atomic orbital electron populations 1.69668 1.05130 1.25570 1.57957 1.24761 0.95578 0.97785 1.03049 0.86087 0.78807 0.83964 0.77180 1.20510 1.21837 1.21848 1.19298 0.91137 0.84106 1.42452 0.91040 1.42349 1.05882 1.00006 1.89596 1.20520 0.93278 0.85185 0.98217 1.21948 0.99580 0.93261 1.02779 1.21375 0.91716 0.84485 1.02499 1.46006 1.10874 1.05539 1.75250 1.20155 0.89331 0.83690 0.76369 1.90726 1.16770 1.84711 1.49145 1.20581 0.97834 0.88814 1.06640 1.20609 0.97386 0.95898 0.87393 1.67483 1.10741 1.10082 1.27312 1.22832 0.93933 0.90624 0.99021 1.22091 1.00625 1.01686 0.92210 1.21654 0.97272 0.94145 1.00392 1.18514 1.01042 0.94228 0.82243 1.91527 1.90236 1.83587 1.45182 0.93556 0.78292 0.96058 0.96034 0.91222 0.91233 0.91351 0.91302 0.76353 0.86139 0.86793 0.81778 0.83653 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.73 -18.84 5.60 -59.91 -0.34 -19.18 16 10 C 0.16 3.15 6.26 -4.04 -0.03 3.13 16 11 C -0.14 -2.11 5.44 -26.73 -0.15 -2.26 16 12 C 0.12 1.71 5.67 -4.03 -0.02 1.69 16 13 N -0.73 -8.44 5.56 -60.29 -0.33 -8.78 16 14 C 0.52 6.76 7.82 -10.99 -0.09 6.67 16 15 O -0.54 -9.28 16.03 5.56 0.09 -9.19 16 16 C -0.10 -0.93 5.82 -29.03 -0.17 -1.10 16 17 C 0.13 1.41 5.28 -82.51 -0.44 0.97 16 18 N -0.45 -4.97 10.27 -9.42 -0.10 -5.06 16 19 C 0.09 0.75 11.18 -17.55 -0.20 0.56 16 20 C -0.15 -0.95 10.11 -39.45 -0.40 -1.35 16 21 C -0.11 -0.85 10.16 -39.21 -0.40 -1.25 16 22 C 0.06 0.64 7.27 -39.28 -0.29 0.35 16 23 F -0.13 -1.40 16.49 2.25 0.04 -1.36 16 24 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.40 3.49 8.47 -40.82 -0.35 3.15 16 33 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 0.82 7.63 -51.93 -0.40 0.42 16 35 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 37 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -35.82 329.48 -7.21 -43.03 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.83 Total: 5.80 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.41 Total: -0.11 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.04 Total: -60.76 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.82 -7.21 -43.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164580197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.256 kcal (2) G-P(sol) polarization free energy of solvation -35.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds