Wall clock time and date at job start Tue Mar 31 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00172 * 2 1 4 4 H 1.48506 * 109.47633 * 270.00631 * 3 2 1 5 5 H 1.48499 * 109.47408 * 30.00925 * 3 2 1 6 6 H 1.48502 * 109.47067 * 150.00673 * 3 2 1 7 7 C 1.37881 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99858 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47078 * 180.02562 * 9 7 2 11 11 C 1.46955 * 110.99681 * 293.79851 * 10 9 7 12 12 C 1.53056 * 109.36066 * 176.81357 * 11 10 9 13 13 N 1.46949 * 109.36720 * 58.40108 * 12 11 10 14 14 C 1.39395 * 111.00167 * 176.81148 * 13 12 11 15 15 C 1.38983 * 119.67558 * 61.92207 * 14 13 12 16 16 C 1.38410 * 119.13703 * 179.97438 * 15 14 13 17 17 C 1.38977 * 118.49594 * 0.02562 * 16 15 14 18 18 F 1.35095 * 120.36237 * 179.97438 * 17 16 15 19 19 C 1.38285 * 119.27530 * 359.97438 * 17 16 15 20 20 N 1.32026 * 120.80759 * 359.72336 * 19 17 16 21 21 O 1.41599 * 119.18425 * 180.27970 * 20 19 17 22 22 C 1.46959 * 110.87908 * 300.68015 * 13 12 11 23 23 C 1.46958 * 110.99959 * 169.99858 * 10 9 7 24 24 H 0.97008 * 119.99766 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47621 * 60.00547 * 9 7 2 26 26 H 1.09002 * 109.47191 * 299.99938 * 9 7 2 27 27 H 1.08995 * 109.48745 * 296.77785 * 11 10 9 28 28 H 1.08996 * 109.48902 * 56.84652 * 11 10 9 29 29 H 1.09003 * 109.48392 * 298.43223 * 12 11 10 30 30 H 1.08999 * 109.50234 * 178.38309 * 12 11 10 31 31 H 1.08005 * 120.43347 * 359.97438 * 15 14 13 32 32 H 1.08004 * 120.74696 * 179.97438 * 16 15 14 33 33 H 1.08007 * 119.59457 * 180.02562 * 19 17 16 34 34 H 1.08993 * 109.49008 * 299.34965 * 22 13 12 35 35 H 1.09008 * 109.48677 * 179.28998 * 22 13 12 36 36 H 1.09004 * 109.48820 * 303.15640 * 23 10 9 37 37 H 1.09006 * 109.48855 * 63.22008 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.9685 -3.6563 -1.2559 12 6 4.0040 -4.7811 -1.1842 13 7 3.3193 -6.0593 -0.9460 14 6 4.2251 -7.1189 -0.9460 15 6 5.2383 -7.1580 0.0045 16 6 6.1312 -8.2155 -0.0054 17 6 5.9791 -9.2027 -0.9717 18 9 6.8296 -10.2514 -1.0163 19 6 4.9476 -9.0998 -1.8870 20 7 4.1081 -8.0815 -1.8481 21 8 3.0607 -8.0135 -2.7985 22 6 2.5562 -6.0188 0.3093 23 6 1.5208 -4.8940 0.2377 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.2894 -3.8397 -2.0884 28 1 3.4764 -2.7033 -1.4036 29 1 4.6996 -4.5836 -0.3685 30 1 4.5519 -4.8318 -2.1251 31 1 5.3277 -6.3734 0.7414 32 1 6.9286 -8.2717 0.7209 33 1 4.8244 -9.8643 -2.6400 34 1 3.2353 -5.8354 1.1419 35 1 2.0483 -6.9719 0.4571 36 1 0.9732 -4.8433 1.1789 37 1 0.8251 -5.0915 -0.5779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:16 Heat of formation + Delta-G solvation = 50.622236 kcal Electronic energy + Delta-G solvation = -21894.395401 eV Core-core repulsion = 18397.348599 eV Total energy + Delta-G solvation = -3497.046802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.71559 -41.75131 -38.77778 -35.40945 -34.72464 -32.61912 -30.77113 -30.67242 -29.84983 -27.70964 -25.39810 -24.81047 -23.38417 -23.14784 -21.54344 -19.50030 -18.75943 -18.30018 -17.61027 -16.71183 -16.34915 -15.66857 -15.47014 -15.39886 -14.95124 -14.71532 -14.42918 -14.39478 -14.13483 -13.82830 -13.32620 -13.09128 -12.26617 -12.20933 -11.90669 -11.44739 -11.28467 -11.04349 -10.85800 -10.81550 -10.56916 -10.45198 -9.83864 -9.66443 -9.27029 -9.22983 -8.68179 -8.56593 -8.45929 -7.33441 -6.05158 -4.07196 -0.00729 0.14341 2.01798 2.56879 3.21640 3.29970 3.36417 3.39363 3.59044 3.89358 4.00565 4.10356 4.39213 4.73801 4.82582 5.03254 5.06916 5.10119 5.23862 5.30901 5.42363 5.45958 5.55248 5.64462 5.86283 5.99817 6.19856 6.32217 6.47932 6.60454 6.69907 6.80115 7.21441 7.24513 7.33001 7.74383 8.01632 8.12964 8.48169 8.99709 9.57155 11.05692 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.036344 B = 0.003535 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.226483 B = 7919.235031 C = 8192.418835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.067 3.933 12 C 0.068 3.932 13 N -0.491 5.491 14 C 0.276 3.724 15 C -0.115 4.115 16 C -0.107 4.107 17 C 0.094 3.906 18 F -0.111 7.111 19 C 0.042 3.958 20 N -0.093 5.093 21 O -0.504 6.504 22 C 0.071 3.929 23 C 0.055 3.945 24 H 0.262 0.738 25 H -0.006 1.006 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.192 0.808 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.291 -17.321 2.506 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.062 4.062 12 C -0.058 4.058 13 N -0.215 5.215 14 C 0.056 3.944 15 C -0.136 4.136 16 C -0.134 4.134 17 C 0.074 3.926 18 F -0.089 7.089 19 C -0.105 4.105 20 N 0.230 4.770 21 O -0.562 6.562 22 C -0.055 4.055 23 C -0.074 4.074 24 H 0.071 0.929 25 H 0.012 0.988 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.191 0.809 32 H 0.183 0.817 33 H 0.209 0.791 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.813 -17.179 2.229 22.156 hybrid contribution 0.347 0.594 -0.275 0.741 sum 14.160 -16.585 1.954 21.895 Atomic orbital electron populations 1.69957 1.06085 1.26843 1.50730 1.24992 0.94858 0.99333 0.95396 0.86504 0.79746 0.83129 0.78054 1.20715 1.21268 1.19809 1.21123 0.93407 0.89897 1.50395 0.91888 1.19719 0.90012 0.87059 0.96387 1.62367 1.28298 1.02757 1.32896 1.22015 0.95468 0.96796 0.91928 1.22453 0.96464 0.86063 1.00799 1.58896 1.23892 1.01274 1.37422 1.19443 0.93956 0.90972 0.89995 1.22192 0.93020 0.99678 0.98752 1.21769 1.00708 0.92506 0.98372 1.17585 0.90611 0.87338 0.97102 1.91606 1.67575 1.54038 1.95689 1.22352 0.91276 0.95078 1.01842 1.43361 1.13792 1.06083 1.13809 1.97697 1.26360 1.94512 1.37651 1.22351 0.96065 1.00010 0.87053 1.22081 0.94507 0.89414 1.01359 0.92861 0.98791 0.95035 0.94486 0.88694 0.93075 0.90577 0.80894 0.81715 0.79076 0.93058 0.90623 0.90135 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.87 8.47 -34.44 -0.29 -14.16 16 8 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 9 C 0.19 4.92 4.72 -4.97 -0.02 4.89 16 10 N -0.54 -11.10 4.70 -235.91 -1.11 -12.21 16 11 C 0.07 1.27 5.43 -3.76 -0.02 1.25 16 12 C 0.07 1.03 5.33 -3.77 -0.02 1.01 16 13 N -0.49 -7.65 4.23 -172.95 -0.73 -8.38 16 14 C 0.28 3.59 5.57 -154.65 -0.86 2.73 16 15 C -0.11 -0.94 8.64 -39.24 -0.34 -1.28 16 16 C -0.11 -0.64 10.15 -39.24 -0.40 -1.04 16 17 C 0.09 0.69 7.34 -39.29 -0.29 0.40 16 18 F -0.11 -0.77 17.28 2.25 0.04 -0.73 16 19 C 0.04 0.42 10.67 -17.45 -0.19 0.23 16 20 N -0.09 -1.37 3.59 -12.29 -0.04 -1.41 16 21 O -0.50 -10.86 19.66 -11.47 -0.23 -11.09 16 22 C 0.07 1.03 5.32 -3.77 -0.02 1.01 16 23 C 0.06 0.98 5.61 -3.77 -0.02 0.96 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 26 H 0.03 0.85 8.03 -51.93 -0.42 0.44 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 1.88 6.79 -51.93 -0.35 1.53 16 29 H 0.05 0.67 7.31 -51.93 -0.38 0.29 16 30 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 31 H 0.17 1.09 7.04 -52.48 -0.37 0.72 16 32 H 0.17 0.44 8.06 -52.48 -0.42 0.02 16 33 H 0.19 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.05 0.63 7.31 -51.93 -0.38 0.25 16 35 H 0.08 1.02 8.13 -51.92 -0.42 0.60 16 36 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 313.07 15.07 4.72 4.72 Total: -1.00 -35.60 313.07 -8.99 -44.58 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -4.78 Total: -3.46 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.57 Total: -2.53 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -1.15 Total: -47.65 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.23 Total: -11.09 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.04 Total: -0.73 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.60 -8.99 -44.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.206 kcal (2) G-P(sol) polarization free energy of solvation -35.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds