Wall clock time and date at job start Tue Mar 31 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00172 * 2 1 4 4 H 1.48506 * 109.47633 * 270.00631 * 3 2 1 5 5 H 1.48499 * 109.47408 * 30.00925 * 3 2 1 6 6 H 1.48502 * 109.47067 * 150.00673 * 3 2 1 7 7 C 1.37881 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99858 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47078 * 180.02562 * 9 7 2 11 11 C 1.46955 * 110.99681 * 293.79851 * 10 9 7 12 12 C 1.53056 * 109.36066 * 176.81357 * 11 10 9 13 13 N 1.46949 * 109.36720 * 58.40108 * 12 11 10 14 14 C 1.39395 * 111.00167 * 176.81148 * 13 12 11 15 15 C 1.38983 * 119.67558 * 61.92207 * 14 13 12 16 16 C 1.38410 * 119.13703 * 179.97438 * 15 14 13 17 17 C 1.38977 * 118.49594 * 0.02562 * 16 15 14 18 18 F 1.35095 * 120.36237 * 179.97438 * 17 16 15 19 19 C 1.38285 * 119.27530 * 359.97438 * 17 16 15 20 20 N 1.32026 * 120.80759 * 359.72336 * 19 17 16 21 21 O 1.41599 * 119.18425 * 180.27970 * 20 19 17 22 22 C 1.46959 * 110.87908 * 300.68015 * 13 12 11 23 23 C 1.46958 * 110.99959 * 169.99858 * 10 9 7 24 24 H 0.97008 * 119.99766 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47621 * 60.00547 * 9 7 2 26 26 H 1.09002 * 109.47191 * 299.99938 * 9 7 2 27 27 H 1.08995 * 109.48745 * 296.77785 * 11 10 9 28 28 H 1.08996 * 109.48902 * 56.84652 * 11 10 9 29 29 H 1.09003 * 109.48392 * 298.43223 * 12 11 10 30 30 H 1.08999 * 109.50234 * 178.38309 * 12 11 10 31 31 H 1.08005 * 120.43347 * 359.97438 * 15 14 13 32 32 H 1.08004 * 120.74696 * 179.97438 * 16 15 14 33 33 H 1.08007 * 119.59457 * 180.02562 * 19 17 16 34 34 H 1.08993 * 109.49008 * 299.34965 * 22 13 12 35 35 H 1.09008 * 109.48677 * 179.28998 * 22 13 12 36 36 H 1.09004 * 109.48820 * 303.15640 * 23 10 9 37 37 H 1.09006 * 109.48855 * 63.22008 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.9685 -3.6563 -1.2559 12 6 4.0040 -4.7811 -1.1842 13 7 3.3193 -6.0593 -0.9460 14 6 4.2251 -7.1189 -0.9460 15 6 5.2383 -7.1580 0.0045 16 6 6.1312 -8.2155 -0.0054 17 6 5.9791 -9.2027 -0.9717 18 9 6.8296 -10.2514 -1.0163 19 6 4.9476 -9.0998 -1.8870 20 7 4.1081 -8.0815 -1.8481 21 8 3.0607 -8.0135 -2.7985 22 6 2.5562 -6.0188 0.3093 23 6 1.5208 -4.8940 0.2377 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.2894 -3.8397 -2.0884 28 1 3.4764 -2.7033 -1.4036 29 1 4.6996 -4.5836 -0.3685 30 1 4.5519 -4.8318 -2.1251 31 1 5.3277 -6.3734 0.7414 32 1 6.9286 -8.2717 0.7209 33 1 4.8244 -9.8643 -2.6400 34 1 3.2353 -5.8354 1.1419 35 1 2.0483 -6.9719 0.4571 36 1 0.9732 -4.8433 1.1789 37 1 0.8251 -5.0915 -0.5779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165055796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:16 Heat of formation + Delta-G solvation = 23.887803 kcal Electronic energy + Delta-G solvation = -21895.554693 eV Core-core repulsion = 18397.348599 eV Total energy + Delta-G solvation = -3498.206094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.31297 -42.63703 -40.07657 -36.90115 -35.51440 -34.61540 -32.03284 -31.83499 -31.02162 -29.36889 -26.92839 -25.62042 -24.70417 -24.31829 -23.26665 -20.87589 -19.48529 -19.11072 -18.60992 -18.44935 -17.41745 -16.82217 -16.44587 -16.33428 -16.15091 -15.94051 -15.68535 -15.42859 -15.32357 -15.22244 -14.79123 -14.29395 -13.97974 -13.46823 -13.10648 -12.89251 -12.75517 -12.59892 -12.36224 -12.27779 -12.15359 -12.00190 -11.65096 -11.23151 -10.61254 -10.57531 -10.46515 -9.84754 -9.74344 -9.13713 -8.19076 -6.29765 -0.74598 -0.55490 1.16037 1.44189 1.45539 1.56960 1.83672 2.39793 2.42355 2.64227 3.12514 3.20075 3.25731 3.35687 3.44764 3.75772 4.03427 4.15187 4.16973 4.28396 4.29672 4.44616 4.50911 4.57625 4.67235 4.84116 4.88033 4.90895 4.95374 5.19433 5.22406 5.30808 5.63570 5.67495 5.69187 6.02732 6.17026 6.27696 6.54177 6.85928 7.40197 8.92638 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.036344 B = 0.003535 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.226483 B = 7919.235031 C = 8192.418835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.002 4.002 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.257 1.257 7 C -0.521 4.521 8 H 0.072 0.928 9 C 0.206 3.794 10 N -0.528 5.528 11 C 0.067 3.933 12 C 0.083 3.917 13 N -0.527 5.527 14 C 0.260 3.740 15 C -0.100 4.100 16 C -0.062 4.062 17 C 0.113 3.887 18 F -0.101 7.101 19 C 0.041 3.959 20 N -0.121 5.121 21 O -0.600 6.600 22 C 0.083 3.917 23 C 0.052 3.948 24 H 0.264 0.736 25 H -0.047 1.047 26 H 0.010 0.990 27 H 0.002 0.998 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.206 0.794 32 H 0.218 0.782 33 H 0.197 0.803 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.801 -18.040 5.079 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.181 1.181 7 C -0.559 4.559 8 H 0.090 0.910 9 C 0.080 3.920 10 N -0.253 5.253 11 C -0.061 4.061 12 C -0.043 4.043 13 N -0.252 5.252 14 C 0.041 3.959 15 C -0.121 4.121 16 C -0.088 4.088 17 C 0.092 3.908 18 F -0.079 7.079 19 C -0.106 4.106 20 N 0.197 4.803 21 O -0.653 6.653 22 C -0.042 4.042 23 C -0.076 4.076 24 H 0.072 0.928 25 H -0.030 1.030 26 H 0.028 0.972 27 H 0.020 0.980 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.223 0.777 32 H 0.235 0.765 33 H 0.214 0.786 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 18.314 -17.934 4.770 26.073 hybrid contribution -0.906 0.662 -0.981 1.491 sum 17.407 -17.272 3.789 24.813 Atomic orbital electron populations 1.70108 1.07997 1.27919 1.51827 1.25983 0.95708 1.03475 0.94802 0.85329 0.78752 0.77948 0.78258 1.20212 1.21059 1.18080 1.21459 0.93894 0.90586 1.49950 0.91000 1.19394 0.90174 0.89103 0.93363 1.62323 1.26924 1.02619 1.33418 1.21996 0.95642 0.98530 0.89978 1.22257 0.95059 0.84533 1.02458 1.58537 1.25907 1.02211 1.38504 1.19732 0.94995 0.90062 0.91143 1.22489 0.91190 1.01012 0.97360 1.22325 0.99829 0.89601 0.97034 1.17526 0.89324 0.87684 0.96273 1.91654 1.66940 1.53771 1.95531 1.22662 0.91136 0.94171 1.02670 1.43367 1.14300 1.08180 1.14409 1.97655 1.30354 1.96066 1.41193 1.22233 0.95677 0.98387 0.87929 1.22182 0.95480 0.89493 1.00483 0.92763 1.02966 0.97235 0.98002 0.89573 0.89605 0.90155 0.77714 0.76506 0.78579 0.89507 0.89835 0.89296 0.97484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.89 13.29 21.45 0.28 -56.60 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.52 -28.88 8.47 25.60 0.22 -28.66 16 8 H 0.07 3.78 7.13 -2.91 -0.02 3.76 16 9 C 0.21 11.06 4.72 85.55 0.40 11.46 16 10 N -0.53 -22.37 4.70 -900.27 -4.23 -26.60 16 11 C 0.07 2.65 5.43 86.31 0.47 3.12 16 12 C 0.08 2.40 5.33 86.31 0.46 2.86 16 13 N -0.53 -16.14 4.23 -701.09 -2.96 -19.10 16 14 C 0.26 6.24 5.57 132.88 0.74 6.98 16 15 C -0.10 -1.06 8.64 22.49 0.19 -0.87 16 16 C -0.06 -0.31 10.15 22.49 0.23 -0.08 16 17 C 0.11 1.13 7.34 22.46 0.16 1.29 16 18 F -0.10 -0.90 17.28 44.97 0.78 -0.12 16 19 C 0.04 0.77 10.67 84.67 0.90 1.67 16 20 N -0.12 -3.57 3.59 -192.79 -0.69 -4.26 16 21 O -0.60 -27.87 19.66 -38.78 -0.76 -28.63 16 22 C 0.08 2.29 5.32 86.31 0.46 2.75 16 23 C 0.05 1.92 5.61 86.31 0.48 2.41 16 24 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 25 H -0.05 -2.88 8.12 -2.39 -0.02 -2.90 16 26 H 0.01 0.55 8.03 -2.39 -0.02 0.53 16 27 H 0.00 0.07 8.14 -2.39 -0.02 0.06 16 28 H 0.09 3.49 6.79 -2.39 -0.02 3.47 16 29 H 0.09 1.89 7.31 -2.39 -0.02 1.87 16 30 H 0.08 2.26 8.13 -2.39 -0.02 2.24 16 31 H 0.21 1.00 7.04 -2.91 -0.02 0.98 16 32 H 0.22 -0.94 8.06 -2.91 -0.02 -0.96 16 33 H 0.20 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.09 1.77 7.31 -2.39 -0.02 1.75 16 35 H 0.08 2.17 8.13 -2.38 -0.02 2.15 16 36 H 0.09 3.05 8.07 -2.39 -0.02 3.03 16 37 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 Total: -1.00 -86.78 313.07 0.70 -86.08 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: 1.08 Total: 0.47 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 5.19 Total: 3.29 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -7.60 Total: -106.57 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.76 Total: -28.63 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.78 Total: -0.12 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -86.78 0.70 -86.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.972 kcal (2) G-P(sol) polarization free energy of solvation -86.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds