Wall clock time and date at job start Tue Mar 31 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86806 * 119.99672 * 2 1 4 4 H 1.48494 * 109.47197 * 270.00174 * 3 2 1 5 5 H 1.48502 * 109.46888 * 30.00516 * 3 2 1 6 6 H 1.48498 * 109.46793 * 149.99967 * 3 2 1 7 7 C 1.40109 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99741 * 180.02562 * 7 2 1 9 9 C 1.40821 * 120.00351 * 359.97438 * 7 2 1 10 10 N 1.33915 * 120.27392 * 0.27603 * 9 7 2 11 11 C 1.31717 * 119.89171 * 180.24745 * 10 9 7 12 12 C 1.38966 * 120.47785 * 359.75300 * 11 10 9 13 13 N 1.32247 * 120.56955 * 359.97438 * 12 11 10 14 14 C 1.32623 * 120.08362 * 359.97438 * 13 12 11 15 15 N 1.37934 * 120.23528 * 180.02562 * 14 13 12 16 16 C 1.46503 * 120.00055 * 0.02562 * 15 14 13 17 17 C 1.50703 * 109.46903 * 179.97438 * 16 15 14 18 18 C 1.32564 * 120.00027 * 125.00397 * 17 16 15 19 19 C 1.47815 * 120.00319 * 179.97438 * 18 17 16 20 20 C 1.39531 * 120.14192 * 179.97438 * 19 18 17 21 21 C 1.37972 * 119.85483 * 179.97438 * 20 19 18 22 22 C 1.38345 * 120.14331 * 359.97438 * 21 20 19 23 23 C 1.38345 * 120.28513 * 0.02562 * 22 21 20 24 24 C 1.37975 * 120.14228 * 0.02562 * 23 22 21 25 25 H 0.96998 * 120.00210 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.75939 * 179.72960 * 11 10 9 27 27 H 1.08003 * 119.71694 * 179.97438 * 12 11 10 28 28 H 0.97006 * 119.99872 * 180.02562 * 15 14 13 29 29 H 1.08995 * 109.47277 * 59.99984 * 16 15 14 30 30 H 1.08995 * 109.47083 * 299.99446 * 16 15 14 31 31 H 1.08005 * 120.00327 * 304.99549 * 17 16 15 32 32 H 1.08005 * 120.00176 * 359.97438 * 18 17 16 33 33 H 1.08000 * 120.07490 * 359.96214 * 20 19 18 34 34 H 1.08004 * 119.93207 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.86073 * 179.74273 * 22 21 20 36 36 H 1.08003 * 119.92854 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.07404 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4887 2.0466 -1.4000 5 1 1.4387 2.6527 0.7002 6 1 3.5388 1.4403 0.7000 7 6 2.0079 -1.2134 -0.0005 8 1 3.0880 -1.2133 -0.0001 9 6 1.3039 -2.4330 -0.0005 10 7 -0.0352 -2.4395 -0.0056 11 6 -0.6861 -3.5846 -0.0006 12 6 0.0068 -4.7892 0.0047 13 7 1.3292 -4.8044 0.0043 14 6 2.0072 -3.6646 -0.0017 15 7 3.3865 -3.6769 -0.0026 16 6 4.1077 -4.9521 0.0025 17 6 5.5917 -4.6899 -0.0004 18 6 6.3600 -5.2187 0.9416 19 6 7.8157 -4.9620 0.9385 20 6 8.6271 -5.5167 1.9289 21 6 9.9852 -5.2737 1.9201 22 6 10.5429 -4.4823 0.9318 23 6 9.7440 -3.9294 -0.0530 24 6 8.3843 -4.1639 -0.0548 25 1 -0.4850 0.8400 0.0004 26 1 -1.7661 -3.5873 -0.0003 27 1 -0.5393 -5.7209 0.0091 28 1 3.8789 -2.8412 -0.0066 29 1 3.8387 -5.5252 -0.8848 30 1 3.8400 -5.5173 0.8951 31 1 6.0293 -4.0712 -0.7699 32 1 5.9225 -5.8372 1.7113 33 1 8.1930 -6.1349 2.7008 34 1 10.6145 -5.7028 2.6858 35 1 11.6059 -4.2916 0.9317 36 1 10.1854 -3.3121 -0.8215 37 1 7.7617 -3.7320 -0.8244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166065443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:18 Heat of formation + Delta-G solvation = 88.526287 kcal Electronic energy + Delta-G solvation = -19890.001175 eV Core-core repulsion = 16825.367240 eV Total energy + Delta-G solvation = -3064.633935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.30082 -38.93194 -36.00163 -33.95745 -33.76124 -31.51134 -31.08978 -30.47357 -28.53910 -25.96413 -25.24251 -23.04202 -22.29307 -21.66513 -21.07721 -19.37778 -17.59184 -17.23217 -16.59780 -15.86780 -15.48444 -15.00094 -14.87253 -14.24697 -14.07881 -13.80368 -13.50277 -13.24752 -13.08549 -12.87856 -12.69823 -12.31264 -11.98927 -11.57106 -11.41821 -11.31674 -11.10679 -10.88542 -10.60536 -10.30456 -10.21183 -9.82917 -9.40187 -9.35748 -9.07718 -8.57222 -8.16565 -7.33195 -6.78731 -6.40613 -4.41710 0.84034 1.28625 2.45930 2.66815 3.05444 3.06743 3.08952 3.26021 3.82235 3.89183 4.41689 4.70165 4.72059 4.74711 4.83581 4.96005 5.19748 5.31936 5.33300 5.55112 5.82695 5.84551 5.91809 5.97834 6.05541 6.11481 6.18117 6.27793 6.35802 6.38031 6.47884 6.68294 6.75515 6.83153 6.88592 7.01220 7.08369 7.67111 7.98033 8.12082 8.40640 8.63313 8.87969 9.47156 10.00987 10.24982 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.003861 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.628836 B = 7250.904800 C = 8763.910824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.423 4.423 8 H 0.082 0.918 9 C 0.195 3.805 10 N -0.449 5.449 11 C 0.029 3.971 12 C -0.085 4.085 13 N -0.501 5.501 14 C 0.261 3.739 15 N -0.722 5.722 16 C 0.171 3.829 17 C -0.139 4.139 18 C -0.122 4.122 19 C -0.046 4.046 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.118 4.118 24 C -0.117 4.117 25 H 0.274 0.726 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.404 0.596 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.668 -5.213 1.264 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.157 4.157 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.100 0.900 9 C 0.061 3.939 10 N -0.167 5.167 11 C -0.134 4.134 12 C -0.239 4.239 13 N -0.223 5.223 14 C 0.015 3.985 15 N -0.364 5.364 16 C 0.046 3.954 17 C -0.157 4.157 18 C -0.141 4.141 19 C -0.046 4.046 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.146 4.146 23 C -0.136 4.136 24 C -0.135 4.135 25 H 0.085 0.915 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.241 0.759 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.322 -5.320 1.264 16.268 hybrid contribution 0.466 0.927 0.002 1.038 sum 15.788 -4.393 1.266 16.436 Atomic orbital electron populations 1.70097 1.07191 1.27935 1.28389 1.26005 0.94899 1.00921 0.93849 0.86337 0.80452 0.80893 0.79258 1.19372 1.20053 1.18498 1.19238 0.93837 0.89348 1.43313 0.89956 1.19040 0.89368 0.91102 0.94438 1.69496 1.06267 1.24589 1.16307 1.23153 0.99683 0.90254 1.00273 1.22263 0.89591 0.97524 1.14553 1.67298 1.08985 1.28409 1.17563 1.19294 0.84932 0.91050 1.03248 1.43614 1.01861 1.06418 1.84500 1.19958 0.86284 0.87864 1.01329 1.23644 0.95829 0.98440 0.97767 1.21675 0.91253 1.01823 0.99362 1.19138 0.93393 0.96995 0.95097 1.21285 0.93582 0.99888 0.98338 1.21078 0.95061 0.98962 0.98774 1.21180 0.99735 0.98329 0.95342 1.21094 0.93778 0.99912 0.98841 1.21388 0.95142 0.98365 0.98571 0.91454 0.85837 0.85987 0.75927 0.92044 0.92617 0.86632 0.86114 0.85869 0.86141 0.86312 0.86055 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.79 11.48 55.56 0.64 -18.15 16 2 C 0.07 1.71 5.50 -17.32 -0.10 1.61 16 3 Si 0.91 18.04 29.56 -169.99 -5.03 13.01 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.42 -10.84 8.89 -37.90 -0.34 -11.18 16 8 H 0.08 1.90 6.12 -52.48 -0.32 1.58 16 9 C 0.19 5.27 6.56 -84.61 -0.56 4.71 16 10 N -0.45 -12.50 8.03 -10.79 -0.09 -12.59 16 11 C 0.03 0.73 11.21 -17.33 -0.19 0.53 16 12 C -0.09 -2.03 11.22 -17.10 -0.19 -2.22 16 13 N -0.50 -12.36 9.71 -11.67 -0.11 -12.47 16 14 C 0.26 6.47 7.51 -154.82 -1.16 5.30 16 15 N -0.72 -14.74 5.60 -61.07 -0.34 -15.08 16 16 C 0.17 2.88 6.14 -5.19 -0.03 2.85 16 17 C -0.14 -1.88 9.05 -36.21 -0.33 -2.20 16 18 C -0.12 -1.53 9.52 -37.57 -0.36 -1.89 16 19 C -0.05 -0.55 5.87 -105.01 -0.62 -1.17 16 20 C -0.11 -1.21 9.79 -39.20 -0.38 -1.59 16 21 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 22 C -0.13 -1.20 10.04 -39.50 -0.40 -1.60 16 23 C -0.12 -1.19 10.03 -39.64 -0.40 -1.58 16 24 C -0.12 -1.32 9.40 -39.19 -0.37 -1.69 16 25 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 26 H 0.12 2.69 8.06 -52.49 -0.42 2.27 16 27 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 28 H 0.40 7.79 6.45 -40.82 -0.26 7.53 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.98 7.81 -51.93 -0.41 0.57 16 31 H 0.12 1.44 6.04 -52.48 -0.32 1.12 16 32 H 0.12 1.42 7.87 -52.48 -0.41 1.01 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.13 1.31 6.17 -52.49 -0.32 0.99 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -30.51 321.69 -10.03 -40.55 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -4.14 Total: 11.55 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -5.81 Total: -11.66 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.10 Total: -58.29 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.51 -10.03 -40.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166065443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.072 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds