Wall clock time and date at job start Tue Mar 31 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86797 * 120.00082 * 2 1 4 4 H 1.48494 * 109.47133 * 269.99812 * 3 2 1 5 5 H 1.48497 * 109.47063 * 30.00323 * 3 2 1 6 6 H 1.48504 * 109.46887 * 150.00165 * 3 2 1 7 7 C 1.40045 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.41143 * 120.00304 * 359.97438 * 7 2 1 10 10 N 1.33595 * 119.17808 * 180.02562 * 9 7 2 11 11 C 1.31661 * 120.79928 * 180.02562 * 10 9 7 12 12 C 1.40077 * 119.13487 * 0.25575 * 11 10 9 13 13 N 1.38798 * 120.76063 * 179.72781 * 12 11 10 14 14 C 1.46496 * 120.00416 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47588 * 179.97438 * 14 13 12 16 16 C 1.32562 * 120.00048 * 124.99591 * 15 14 13 17 17 C 1.47819 * 119.99859 * 180.02562 * 16 15 14 18 18 C 1.39533 * 120.14088 * 359.72157 * 17 16 15 19 19 C 1.37973 * 119.85313 * 179.67742 * 18 17 16 20 20 C 1.38337 * 120.14495 * 0.62404 * 19 18 17 21 21 C 1.38349 * 120.28447 * 359.67739 * 20 19 18 22 22 C 1.37973 * 120.14163 * 359.97438 * 21 20 19 23 23 C 1.40084 * 118.48458 * 359.50148 * 12 11 10 24 24 N 1.31661 * 119.13508 * 0.50009 * 23 12 11 25 25 H 0.96994 * 119.99745 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.43090 * 179.97438 * 11 10 9 27 27 H 0.97004 * 119.99911 * 359.97438 * 13 12 11 28 28 H 1.09004 * 109.47226 * 299.99912 * 14 13 12 29 29 H 1.09001 * 109.47693 * 59.99634 * 14 13 12 30 30 H 1.08002 * 119.99947 * 305.00058 * 15 14 13 31 31 H 1.07994 * 120.00634 * 0.02562 * 16 15 14 32 32 H 1.08004 * 120.06842 * 359.97438 * 18 17 16 33 33 H 1.07998 * 119.92812 * 180.32325 * 19 18 17 34 34 H 1.07997 * 119.86255 * 179.69691 * 20 19 18 35 35 H 1.07998 * 119.93010 * 180.02562 * 21 20 19 36 36 H 1.07997 * 120.07069 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.43460 * 180.22315 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0463 -1.4000 5 1 1.4388 2.6526 0.7001 6 1 3.5389 1.4400 0.7000 7 6 2.0075 -1.2129 -0.0005 8 1 3.0875 -1.2129 -0.0001 9 6 1.3018 -2.4352 -0.0005 10 7 1.9863 -3.5825 -0.0005 11 6 1.3606 -4.7409 -0.0010 12 6 -0.0401 -4.7594 -0.0071 13 7 -0.7341 -5.9613 -0.0134 14 6 -2.1991 -5.9614 -0.0191 15 6 -2.7015 -7.3821 -0.0260 16 6 -3.5468 -7.7908 0.9097 17 6 -4.0392 -9.1846 0.9032 18 6 -3.6206 -10.0709 -0.0899 19 6 -4.0786 -11.3724 -0.0865 20 6 -4.9611 -11.7957 0.8912 21 6 -5.3849 -10.9202 1.8750 22 6 -4.9287 -9.6181 1.8870 23 6 -0.7244 -3.5371 -0.0016 24 7 -0.0341 -2.4159 -0.0011 25 1 -0.4849 0.8400 0.0004 26 1 1.9199 -5.6647 -0.0015 27 1 -0.2491 -6.8014 -0.0142 28 1 -2.5659 -5.4503 0.8711 29 1 -2.5591 -5.4447 -0.9088 30 1 -2.3728 -8.0674 -0.7934 31 1 -3.8759 -7.1056 1.6768 32 1 -2.9357 -9.7401 -0.8568 33 1 -3.7513 -12.0608 -0.8515 34 1 -5.3205 -12.8141 0.8867 35 1 -6.0736 -11.2568 2.6357 36 1 -5.2600 -8.9357 2.6557 37 1 -1.8042 -3.5146 -0.0024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166097142.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:21 Heat of formation + Delta-G solvation = 92.442370 kcal Electronic energy + Delta-G solvation = -19410.241358 eV Core-core repulsion = 16345.777237 eV Total energy + Delta-G solvation = -3064.464120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.42549 -38.94843 -36.30618 -34.17654 -33.19620 -31.68600 -31.21254 -30.53450 -28.67994 -26.23984 -24.53785 -23.31069 -22.78443 -21.97173 -20.94375 -19.51852 -17.77737 -17.36336 -16.47172 -15.70781 -15.52603 -15.15374 -14.99686 -14.39210 -14.28576 -13.94601 -13.65359 -13.34458 -13.16204 -12.91796 -12.62204 -12.51366 -11.99548 -11.63629 -11.28019 -11.20453 -11.16370 -11.02601 -10.54252 -10.46134 -10.17820 -9.79862 -9.37593 -9.19583 -9.15622 -8.90064 -8.29979 -7.24049 -6.76231 -6.38552 -4.35111 0.70228 1.16748 2.30842 2.76375 2.93511 3.14180 3.18271 3.22523 3.69717 4.01175 4.30220 4.57509 4.58782 4.72218 4.78891 4.83784 5.03866 5.17819 5.20511 5.38611 5.70045 5.72906 5.79840 5.80390 5.86522 5.96847 6.02344 6.10768 6.22199 6.26413 6.30063 6.47580 6.51977 6.65546 6.75671 7.11457 7.18173 7.40692 8.15014 8.30225 8.52671 8.59824 8.76967 9.23993 10.26338 10.42147 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.051139 B = 0.002440 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.398513 B =11470.431446 C =11819.077786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.068 3.932 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.414 4.414 8 H 0.088 0.912 9 C 0.369 3.631 10 N -0.566 5.566 11 C 0.103 3.897 12 C -0.040 4.040 13 N -0.749 5.749 14 C 0.165 3.835 15 C -0.141 4.141 16 C -0.118 4.118 17 C -0.050 4.050 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.111 4.111 23 C 0.100 3.900 24 N -0.476 5.476 25 H 0.271 0.729 26 H 0.126 0.874 27 H 0.386 0.614 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.849 -17.324 1.257 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.157 4.157 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.451 4.451 8 H 0.107 0.893 9 C 0.128 3.872 10 N -0.285 5.285 11 C -0.071 4.071 12 C -0.145 4.145 13 N -0.387 5.387 14 C 0.040 3.960 15 C -0.159 4.159 16 C -0.137 4.137 17 C -0.050 4.050 18 C -0.134 4.134 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.138 4.138 22 C -0.129 4.129 23 C -0.076 4.076 24 N -0.192 5.192 25 H 0.082 0.918 26 H 0.143 0.857 27 H 0.219 0.781 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.669 -16.127 1.258 19.378 hybrid contribution -0.137 -0.609 -0.015 0.624 sum -10.806 -16.736 1.243 19.960 Atomic orbital electron populations 1.70146 1.07115 1.27616 1.30130 1.26008 0.94943 1.01038 0.93685 0.86217 0.80340 0.80434 0.79133 1.19484 1.20245 1.18520 1.19084 0.94460 0.87633 1.43876 0.89341 1.19812 0.85608 0.90719 0.91099 1.68548 1.40484 0.98111 1.21385 1.22184 0.89125 0.96360 0.99478 1.19193 0.93437 0.87615 1.14233 1.43461 1.02781 1.04748 1.87720 1.20047 0.82625 0.92504 1.00832 1.23520 0.97021 0.97418 0.97937 1.21709 0.99227 0.93459 0.99276 1.19131 0.96894 0.93699 0.95245 1.21364 1.00114 0.93501 0.98459 1.21093 0.97783 0.95924 0.98864 1.21201 0.98202 0.99665 0.95329 1.21098 1.00166 0.93751 0.98799 1.21303 0.97144 0.96132 0.98350 1.22691 0.98984 0.87333 0.98632 1.69281 1.08417 1.25735 1.15808 0.91772 0.85660 0.78116 0.92829 0.92247 0.86648 0.86023 0.85697 0.86031 0.86228 0.86045 0.85793 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.72 11.41 55.55 0.63 -19.08 16 2 C 0.07 1.79 5.50 -17.34 -0.10 1.69 16 3 Si 0.91 19.22 29.56 -169.99 -5.02 14.19 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.41 -11.71 9.35 -37.80 -0.35 -12.06 16 8 H 0.09 2.42 7.85 -52.49 -0.41 2.01 16 9 C 0.37 10.67 7.35 -158.23 -1.16 9.51 16 10 N -0.57 -15.28 10.34 -12.49 -0.13 -15.41 16 11 C 0.10 2.37 11.20 -16.94 -0.19 2.18 16 12 C -0.04 -0.86 6.72 -83.33 -0.56 -1.42 16 13 N -0.75 -12.40 5.70 -59.41 -0.34 -12.74 16 14 C 0.16 2.30 5.38 -5.20 -0.03 2.27 16 15 C -0.14 -1.58 9.05 -36.22 -0.33 -1.90 16 16 C -0.12 -1.26 9.52 -37.57 -0.36 -1.62 16 17 C -0.05 -0.52 5.87 -105.01 -0.62 -1.13 16 18 C -0.12 -1.13 9.40 -39.20 -0.37 -1.50 16 19 C -0.12 -1.02 10.03 -39.64 -0.40 -1.42 16 20 C -0.13 -1.03 10.04 -39.50 -0.40 -1.42 16 21 C -0.12 -1.01 10.03 -39.64 -0.40 -1.40 16 22 C -0.11 -1.05 9.79 -39.19 -0.38 -1.43 16 23 C 0.10 2.41 10.58 -16.93 -0.18 2.23 16 24 N -0.48 -13.38 7.84 -12.49 -0.10 -13.48 16 25 H 0.27 6.65 8.29 -40.82 -0.34 6.31 16 26 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 27 H 0.39 5.62 8.49 -40.82 -0.35 5.27 16 28 H 0.05 0.77 7.65 -51.93 -0.40 0.37 16 29 H 0.06 0.86 7.99 -51.93 -0.42 0.44 16 30 H 0.12 1.17 6.04 -52.49 -0.32 0.85 16 31 H 0.12 1.22 7.87 -52.49 -0.41 0.81 16 32 H 0.13 1.08 6.17 -52.48 -0.32 0.75 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.13 2.67 6.88 -52.49 -0.36 2.31 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -31.71 323.49 -10.13 -41.84 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.23 Total: 7.23 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -5.81 Total: -7.43 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.07 Total: -60.71 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.71 -10.13 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166097142.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.285 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds