Wall clock time and date at job start Tue Mar 31 2020 05:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47269 * 2 1 4 4 C 1.46499 * 119.99904 * 269.99812 * 3 2 1 5 5 C 1.50701 * 109.47254 * 269.99617 * 4 3 2 6 6 H 1.07997 * 120.00038 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00050 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00007 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00092 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46996 * 59.99795 * 9 7 5 11 11 H 1.48504 * 109.47294 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46912 * 299.99888 * 9 7 5 13 13 C 1.38995 * 119.99769 * 89.99613 * 3 2 1 14 14 C 1.39018 * 119.67615 * 5.28352 * 13 3 2 15 15 C 1.38450 * 119.22584 * 180.29804 * 14 13 3 16 16 C 1.38637 * 118.56346 * 359.42961 * 15 14 13 17 17 N 1.48009 * 120.36040 * 180.30286 * 16 15 14 18 18 O 1.21796 * 119.99983 * 359.97438 * 17 16 15 19 19 O 1.21796 * 120.00185 * 180.02562 * 17 16 15 20 20 C 1.38736 * 119.27957 * 0.27855 * 16 15 14 21 21 O 1.35674 * 119.63598 * 180.02562 * 20 16 15 22 22 C 1.42905 * 116.99687 * 180.02562 * 21 20 16 23 23 N 1.32352 * 120.72121 * 0.02562 * 20 16 15 24 24 H 1.08998 * 109.47184 * 300.00088 * 1 2 3 25 25 H 1.09005 * 109.46799 * 60.00013 * 1 2 3 26 26 H 1.09002 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47184 * 239.99911 * 2 1 3 28 28 H 1.08996 * 109.47022 * 119.99994 * 2 1 3 29 29 H 1.08999 * 109.47310 * 30.00134 * 4 3 2 30 30 H 1.09007 * 109.46794 * 149.99915 * 4 3 2 31 31 H 0.96997 * 120.00247 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.38935 * 0.02562 * 14 13 3 33 33 H 1.08002 * 120.72204 * 179.70986 * 15 14 13 34 34 H 1.09000 * 109.47000 * 179.97438 * 22 21 20 35 35 H 1.09010 * 109.46613 * 299.99821 * 22 21 20 36 36 H 1.08997 * 109.47269 * 59.99489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1495 2.3905 -2.8774 8 7 3.3495 3.1265 -3.6176 9 14 5.9136 2.0964 -3.4169 10 1 6.1404 0.6397 -3.5952 11 1 6.1612 2.7965 -4.7029 12 1 6.8414 2.6188 -2.3817 13 6 2.2500 2.0364 1.2038 14 6 2.1222 1.3418 2.4012 15 6 2.3490 2.0052 3.5950 16 6 2.7091 3.3433 3.5518 17 7 2.9675 4.0893 4.8037 18 8 2.8637 3.5279 5.8796 19 8 3.2830 5.2648 4.7582 20 6 2.8250 3.9754 2.3222 21 8 3.1775 5.2845 2.2715 22 6 3.2797 5.8791 0.9760 23 7 2.5956 3.3152 1.1983 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6877 -2.0284 30 1 2.0956 3.1411 -1.1384 31 1 3.6758 3.5176 -4.4431 32 1 1.8450 0.2979 2.4003 33 1 2.2520 1.4903 4.5394 34 1 3.5674 6.9254 1.0782 35 1 4.0329 5.3500 0.3919 36 1 2.3165 5.8151 0.4699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:45 Heat of formation + Delta-G solvation = 3.199339 kcal Electronic energy + Delta-G solvation = -22433.126834 eV Core-core repulsion = 18921.650831 eV Total energy + Delta-G solvation = -3511.476003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.67676 -40.38680 -38.40840 -36.39548 -35.89272 -33.09354 -32.73648 -30.83877 -30.20549 -27.55417 -27.03020 -25.26417 -23.86219 -22.95395 -22.37208 -20.78747 -18.99339 -18.26303 -17.91284 -17.08269 -16.95233 -16.46549 -16.00577 -15.75189 -15.13582 -14.48775 -14.13093 -13.85774 -13.54625 -13.34642 -13.10720 -12.83049 -12.29223 -11.98634 -11.63490 -11.41397 -11.26060 -11.07191 -11.04649 -10.94671 -10.81491 -10.63186 -10.61496 -10.45932 -10.32329 -9.79113 -9.48542 -8.98300 -8.65746 -7.45085 -6.26939 -4.34594 0.47249 1.33708 1.89507 1.99354 2.96400 3.16294 3.22052 3.23275 3.32425 3.80259 4.23658 4.53593 4.75766 4.86215 5.00864 5.06989 5.16136 5.32160 5.45838 5.54141 5.67119 5.67822 5.71593 5.88727 5.96208 5.97934 6.09865 6.25937 6.65164 6.84931 7.07176 7.16011 7.40585 7.61008 7.75926 7.93116 8.15530 8.26055 8.68843 9.31338 10.79510 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016204 B = 0.005971 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.562420 B = 4688.254775 C = 5732.167473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 N -0.553 5.553 4 C 0.245 3.755 5 C -0.534 4.534 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.891 5.891 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.276 1.276 13 C 0.487 3.513 14 C -0.282 4.282 15 C 0.048 3.952 16 C -0.206 4.206 17 N 0.063 4.937 18 O -0.213 6.213 19 O -0.166 6.166 20 C 0.442 3.558 21 O -0.279 6.279 22 C 0.034 3.966 23 N -0.566 5.566 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.266 0.734 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 -3.672 7.528 9.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.255 5.255 4 C 0.126 3.874 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 C 0.245 3.755 14 C -0.307 4.307 15 C 0.022 3.978 16 C -0.299 4.299 17 N 0.572 4.428 18 O -0.416 6.416 19 O -0.381 6.381 20 C 0.253 3.747 21 O -0.182 6.182 22 C -0.061 4.061 23 N -0.302 5.302 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.606 -3.455 5.963 8.289 hybrid contribution 0.999 -0.369 0.261 1.097 sum -3.607 -3.824 6.224 8.147 Atomic orbital electron populations 1.22218 0.95900 1.02034 1.02696 1.21637 0.94017 0.82118 1.03607 1.47740 1.60532 1.12490 1.04755 1.19553 0.96701 0.93992 0.77172 1.21310 0.96446 1.32727 1.06745 0.92482 1.24890 0.97922 0.94691 0.96144 1.69903 1.35762 1.32855 1.14343 0.86565 0.84451 0.78491 0.78009 1.20142 1.20983 1.20148 1.18287 0.83769 0.86543 0.86922 1.21320 1.16861 1.02342 0.90197 1.20815 0.87453 0.89609 0.99892 1.20677 1.31627 0.95243 0.82306 1.43082 0.97063 1.00786 1.01902 1.94445 1.58702 1.71392 1.17045 1.94536 1.50159 0.99378 1.94068 1.19038 0.83821 0.85141 0.86661 1.86508 1.80193 1.18426 1.33050 1.23057 1.03488 0.97625 0.81892 1.67315 1.27267 1.09797 1.25870 0.92649 0.91869 0.91535 0.88957 0.90790 0.94564 0.92821 0.92393 0.83273 0.82432 0.88285 0.91001 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 2 C 0.11 1.49 5.97 -4.04 -0.02 1.47 16 3 N -0.55 -10.03 2.57 -175.23 -0.45 -10.48 16 4 C 0.24 5.53 5.22 -5.19 -0.03 5.50 16 5 C -0.53 -13.47 9.39 -34.44 -0.32 -13.80 16 6 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.07 13.29 55.43 0.74 -23.34 16 9 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.49 8.71 7.37 -155.02 -1.14 7.57 16 14 C -0.28 -4.04 9.27 -39.21 -0.36 -4.40 16 15 C 0.05 0.69 9.66 -39.36 -0.38 0.31 16 16 C -0.21 -3.63 6.89 -79.62 -0.55 -4.18 16 17 N 0.06 1.18 4.45 34.12 0.15 1.33 16 18 O -0.21 -3.90 18.52 -29.46 -0.55 -4.44 16 19 O -0.17 -3.28 17.26 -36.48 -0.63 -3.91 16 20 C 0.44 8.30 7.47 -17.14 -0.13 8.17 16 21 O -0.28 -5.08 8.50 -40.82 -0.35 -5.43 16 22 C 0.03 0.54 10.38 101.05 1.05 1.58 16 23 N -0.57 -11.11 7.92 -12.51 -0.10 -11.21 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 28 H 0.07 0.83 5.96 -51.93 -0.31 0.52 16 29 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.05 1.34 7.30 -51.93 -0.38 0.96 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 32 H 0.15 1.65 6.01 -52.48 -0.32 1.34 16 33 H 0.16 1.84 7.69 -52.49 -0.40 1.43 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.24 8.10 -51.92 -0.42 0.82 16 36 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 318.68 15.07 4.80 4.80 Total: -1.00 -29.22 318.68 -7.33 -36.55 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.32 Total: -1.45 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.60 Total: 2.29 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.34 Total: -43.70 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.52 Total: -13.78 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.22 -7.33 -36.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.752 kcal (2) G-P(sol) polarization free energy of solvation -29.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds