Wall clock time and date at job start Tue Mar 31 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86801 * 120.00192 * 2 1 4 4 H 1.48500 * 109.47152 * 270.42876 * 3 2 1 5 5 H 1.48493 * 109.46931 * 30.42855 * 3 2 1 6 6 H 1.48506 * 109.47144 * 150.43121 * 3 2 1 7 7 C 1.39952 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00232 * 339.16311 * 7 2 1 9 9 C 1.41026 * 119.99776 * 159.15865 * 7 2 1 10 10 C 1.41004 * 120.70670 * 334.66323 * 9 7 2 11 11 C 1.38011 * 118.27835 * 180.24321 * 10 9 7 12 12 C 1.38682 * 119.62845 * 359.75331 * 11 10 9 13 13 N 1.31974 * 121.44465 * 359.97438 * 12 11 10 14 14 C 1.32265 * 121.86737 * 0.02562 * 13 12 11 15 15 N 1.38090 * 119.90230 * 179.97438 * 14 13 12 16 16 C 1.46499 * 120.00307 * 2.88644 * 15 14 13 17 17 C 1.50700 * 115.55085 * 294.55402 * 16 15 14 18 18 C 1.38232 * 119.61532 * 353.72606 * 17 16 15 19 19 C 1.38633 * 119.15751 * 179.97438 * 18 17 16 20 20 C 1.38671 * 118.42353 * 359.97438 * 19 18 17 21 21 C 1.38182 * 119.16060 * 0.02562 * 20 19 18 22 22 N 1.31852 * 119.62033 * 173.45647 * 17 16 15 23 23 C 1.52995 * 117.50040 * 148.88266 * 16 15 14 24 24 C 1.52998 * 117.50022 * 80.22260 * 16 15 14 25 25 H 0.96998 * 119.99864 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.86159 * 359.97277 * 10 9 7 27 27 H 1.07994 * 120.18536 * 179.72634 * 11 10 9 28 28 H 1.07999 * 119.27792 * 180.02562 * 12 11 10 29 29 H 0.97005 * 119.99765 * 183.16761 * 15 14 13 30 30 H 1.07997 * 120.42433 * 359.96186 * 18 17 16 31 31 H 1.08002 * 120.78806 * 180.02562 * 19 18 17 32 32 H 1.08001 * 120.42079 * 180.02562 * 20 19 18 33 33 H 1.08001 * 119.61483 * 179.97438 * 21 20 19 34 34 H 1.09002 * 117.49788 * 0.02562 * 23 16 15 35 35 H 1.09004 * 117.50332 * 145.02165 * 23 16 15 36 36 H 1.08997 * 117.50079 * 214.98121 * 24 16 15 37 37 H 1.09003 * 117.49602 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4812 2.0516 -1.4000 5 1 1.4448 2.6500 0.7091 6 1 3.5448 1.4375 0.6909 7 6 2.0084 -1.2120 0.0005 8 1 1.5214 -2.1166 0.3336 9 6 3.3494 -1.2522 -0.4340 10 6 3.8432 -0.2874 -1.3360 11 6 5.1622 -0.3772 -1.7320 12 6 5.9593 -1.3975 -1.2351 13 7 5.4853 -2.2906 -0.3870 14 6 4.2308 -2.2596 0.0311 15 7 3.7773 -3.2150 0.9189 16 6 4.7008 -4.2231 1.4453 17 6 5.2539 -5.1907 0.4310 18 6 4.7784 -5.1660 -0.8668 19 6 5.2942 -6.0600 -1.7922 20 6 6.2737 -6.9491 -1.3762 21 6 6.6996 -6.9151 -0.0621 22 7 6.1894 -6.0476 0.7903 23 6 4.4396 -4.7520 2.8569 24 6 5.6168 -3.8084 2.5986 25 1 -0.4850 0.8400 -0.0004 26 1 3.2046 0.4987 -1.7108 27 1 5.5712 0.3428 -2.4253 28 1 6.9908 -1.4621 -1.5485 29 1 2.8462 -3.2213 1.1909 30 1 4.0147 -4.4593 -1.1560 31 1 4.9422 -6.0634 -2.8133 32 1 6.6982 -7.6592 -2.0704 33 1 7.4618 -7.6045 0.2699 34 1 3.5802 -4.3503 3.3939 35 1 4.6680 -5.7998 3.0522 36 1 6.6192 -4.2357 2.6238 37 1 5.5319 -2.7856 2.9659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168146973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:33 Heat of formation + Delta-G solvation = 88.873981 kcal Electronic energy + Delta-G solvation = -21532.539155 eV Core-core repulsion = 18467.920298 eV Total energy + Delta-G solvation = -3064.618857 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41410 -40.34746 -38.38483 -35.81808 -34.55009 -33.13425 -33.01757 -31.80821 -30.22617 -27.13628 -25.30590 -24.26679 -23.79766 -23.45858 -22.62866 -21.04015 -19.38659 -18.60871 -18.19682 -17.16538 -16.94797 -16.73447 -16.23465 -15.67536 -15.58111 -15.20816 -15.10705 -14.80133 -14.51543 -14.20837 -13.93584 -13.83680 -13.56364 -13.28968 -12.60208 -12.58911 -12.37419 -12.12150 -11.95938 -11.80378 -11.50186 -11.29404 -10.92432 -10.68975 -10.28516 -10.10480 -9.86812 -9.52904 -8.91244 -8.57494 -6.30414 0.27459 0.44187 0.73477 0.93688 1.25390 1.37773 1.47499 2.09905 2.41072 2.66240 2.71623 3.25025 3.36702 3.60327 3.75244 3.99956 4.07735 4.14592 4.23077 4.33070 4.35954 4.46263 4.51460 4.66523 4.71090 4.73564 4.82950 4.94236 5.02734 5.10754 5.21260 5.28036 5.30912 5.42164 5.52409 5.72733 5.89226 5.95692 6.20583 6.39980 6.68535 6.76825 6.96423 7.14926 7.83200 8.15187 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022047 B = 0.005746 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.706756 B = 4872.084311 C = 5252.021622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.056 3.944 3 Si 0.962 3.038 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.221 4.221 11 C -0.174 4.174 12 C 0.005 3.995 13 N -0.517 5.517 14 C 0.321 3.679 15 N -0.689 5.689 16 C 0.142 3.858 17 C 0.168 3.832 18 C -0.159 4.159 19 C -0.086 4.086 20 C -0.175 4.175 21 C 0.090 3.910 22 N -0.501 5.501 23 C -0.135 4.135 24 C -0.148 4.148 25 H 0.293 0.707 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.149 0.851 29 H 0.410 0.590 30 H 0.102 0.898 31 H 0.145 0.855 32 H 0.168 0.832 33 H 0.187 0.813 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.359 -9.272 0.019 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.160 4.160 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.089 0.911 9 C -0.013 4.013 10 C -0.247 4.247 11 C -0.196 4.196 12 C -0.148 4.148 13 N -0.234 5.234 14 C 0.081 3.919 15 N -0.326 5.326 16 C 0.051 3.949 17 C 0.030 3.970 18 C -0.180 4.180 19 C -0.112 4.112 20 C -0.194 4.194 21 C -0.067 4.067 22 N -0.211 5.211 23 C -0.173 4.173 24 C -0.187 4.187 25 H 0.104 0.896 26 H 0.125 0.875 27 H 0.148 0.852 28 H 0.166 0.834 29 H 0.248 0.752 30 H 0.120 0.880 31 H 0.162 0.838 32 H 0.185 0.815 33 H 0.204 0.796 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.122 0.878 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.081 -9.871 1.185 14.159 hybrid contribution -1.482 1.756 -1.344 2.662 sum 8.599 -8.115 -0.160 11.825 Atomic orbital electron populations 1.69731 1.08829 1.31366 1.36491 1.26600 0.95123 1.03598 0.90711 0.85599 0.78932 0.77546 0.79203 1.18584 1.20665 1.19068 1.19073 0.94601 0.96039 1.39463 0.91086 1.18226 0.93785 0.94180 0.95110 1.21297 0.97214 1.03158 1.03051 1.21588 0.94364 1.00755 1.02858 1.21994 0.99637 0.93792 0.99360 1.66817 1.13578 1.27601 1.15430 1.18426 0.88984 0.91441 0.93041 1.43162 1.10879 1.29428 1.49150 1.18606 0.97873 0.91683 0.86694 1.20244 0.91910 0.92548 0.92318 1.21723 1.01800 0.99613 0.94842 1.21823 0.95593 0.93722 1.00014 1.22390 0.98214 1.00654 0.98176 1.23257 0.97974 0.95377 0.90072 1.67233 1.09596 1.05205 1.39027 1.23344 1.00168 1.00677 0.93106 1.23138 0.96168 0.99358 1.00041 0.89620 0.87480 0.85205 0.83378 0.75181 0.88017 0.83765 0.81496 0.79594 0.87261 0.86545 0.87833 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.79 13.93 21.83 0.30 -43.48 16 2 C 0.06 2.85 5.40 85.25 0.46 3.31 16 3 Si 0.96 42.36 24.58 68.60 1.69 44.04 16 4 H -0.26 -10.94 6.38 99.48 0.63 -10.30 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.27 -12.33 7.07 99.48 0.70 -11.63 16 7 C -0.46 -24.15 9.05 23.37 0.21 -23.94 16 8 H 0.07 3.84 6.83 -2.91 -0.02 3.82 16 9 C -0.01 -0.27 5.22 -21.06 -0.11 -0.38 16 10 C -0.22 -10.49 7.47 22.89 0.17 -10.31 16 11 C -0.17 -7.26 10.08 22.32 0.22 -7.04 16 12 C 0.00 0.19 11.17 84.78 0.95 1.13 16 13 N -0.52 -23.06 8.38 -191.46 -1.60 -24.67 16 14 C 0.32 14.81 6.06 134.05 0.81 15.62 16 15 N -0.69 -28.23 4.83 -306.96 -1.48 -29.71 16 16 C 0.14 5.05 2.24 2.85 0.01 5.05 16 17 C 0.17 5.90 5.99 42.55 0.25 6.15 16 18 C -0.16 -5.70 8.47 22.36 0.19 -5.51 16 19 C -0.09 -2.41 10.18 22.47 0.23 -2.18 16 20 C -0.18 -3.91 10.11 22.36 0.23 -3.68 16 21 C 0.09 2.18 11.18 84.67 0.95 3.13 16 22 N -0.50 -15.55 9.49 -183.88 -1.74 -17.30 16 23 C -0.14 -3.87 10.01 30.62 0.31 -3.56 16 24 C -0.15 -4.83 9.96 30.62 0.30 -4.52 16 25 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 26 H 0.11 5.05 4.27 -2.91 -0.01 5.03 16 27 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 28 H 0.15 5.25 8.06 -2.91 -0.02 5.22 16 29 H 0.41 16.78 7.03 -92.70 -0.65 16.13 16 30 H 0.10 4.23 6.42 -2.91 -0.02 4.21 16 31 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 33 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.12 3.01 8.13 -2.38 -0.02 2.99 16 36 H 0.10 3.29 7.85 -2.39 -0.02 3.28 16 37 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -60.69 309.74 2.72 -57.97 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: 0.38 Total: 39.88 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 5.18 Total: -26.74 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -4.53 Total: -115.16 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.69 Total: 44.04 kcal Total: -60.69 2.72 -57.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168146973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.849 kcal (2) G-P(sol) polarization free energy of solvation -60.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds