Wall clock time and date at job start Tue Mar 31 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48502 * 109.46824 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46888 * 299.99153 * 3 2 1 6 6 H 1.48492 * 109.47411 * 59.99573 * 3 2 1 7 7 C 1.38638 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99586 * 180.02562 * 7 2 1 9 9 O 1.34809 * 119.99489 * 0.02562 * 7 2 1 10 10 C 1.35818 * 116.99430 * 185.05499 * 9 7 2 11 11 C 1.39455 * 120.40495 * 354.51297 * 10 9 7 12 12 C 1.38208 * 118.45017 * 180.02562 * 11 10 9 13 13 C 1.39172 * 119.16793 * 359.97438 * 12 11 10 14 14 N 1.39127 * 119.62786 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99947 * 0.02562 * 14 13 12 16 16 H 1.08999 * 109.50802 * 325.07608 * 15 14 13 17 17 C 1.53038 * 109.50668 * 85.19595 * 15 14 13 18 18 N 1.46848 * 109.52584 * 179.11927 * 17 15 14 19 19 C 1.46851 * 111.19486 * 298.25973 * 18 17 15 20 20 C 1.53031 * 109.52463 * 61.74278 * 19 18 17 21 21 C 1.53120 * 109.50171 * 205.00044 * 15 14 13 22 22 H 1.09004 * 109.52730 * 62.49788 * 21 15 14 23 23 F 1.39902 * 109.52407 * 302.30539 * 21 15 14 24 24 N 1.32378 * 120.73902 * 0.25892 * 13 12 11 25 25 C 1.31934 * 121.69386 * 359.47218 * 24 13 12 26 26 H 0.96994 * 119.99782 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.77133 * 0.05346 * 11 10 9 28 28 H 1.07999 * 120.41530 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00163 * 180.02562 * 14 13 12 30 30 H 1.09003 * 109.45975 * 299.13830 * 17 15 14 31 31 H 1.09005 * 109.45992 * 59.10066 * 17 15 14 32 32 H 1.00895 * 110.99878 * 174.15867 * 18 17 15 33 33 H 1.08999 * 109.46516 * 301.72183 * 19 18 17 34 34 H 1.09005 * 109.45437 * 181.75889 * 19 18 17 35 35 H 1.09005 * 109.50293 * 180.88006 * 20 19 18 36 36 H 1.09002 * 109.50362 * 60.75869 * 20 19 18 37 37 H 1.07998 * 119.62255 * 180.29421 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8911 2.3964 -1.2127 6 1 1.8910 2.3965 1.2124 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0705 -3.5047 0.1077 11 6 3.4639 -3.4473 0.0970 12 6 4.1724 -4.6288 0.2080 13 6 3.4767 -5.8283 0.3266 14 7 4.1803 -7.0233 0.4385 15 6 5.6453 -7.0142 0.4315 16 1 6.0012 -6.2296 -0.2362 17 6 6.1614 -6.7533 1.8485 18 7 7.6298 -6.7650 1.8459 19 6 8.1496 -8.0737 1.4292 20 6 7.6929 -8.3739 -0.0002 21 6 6.1626 -8.3714 -0.0531 22 1 5.8333 -8.5420 -1.0781 23 9 5.6646 -9.3840 0.7739 24 7 2.1531 -5.8455 0.3286 25 6 1.4453 -4.7364 0.2296 26 1 -0.4849 0.8400 -0.0004 27 1 3.9772 -2.5016 0.0045 28 1 5.2523 -4.6212 0.2028 29 1 3.7010 -7.8625 0.5210 30 1 5.8065 -5.7813 2.1910 31 1 5.7931 -7.5308 2.5179 32 1 7.9951 -6.5016 2.7487 33 1 7.7722 -8.8450 2.1006 34 1 9.2389 -8.0606 1.4673 35 1 8.0659 -9.3523 -0.3035 36 1 8.0816 -7.6106 -0.6743 37 1 0.3666 -4.7889 0.2395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168227464.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:23 Heat of formation + Delta-G solvation = -30.474128 kcal Electronic energy + Delta-G solvation = -21698.360952 eV Core-core repulsion = 18197.797548 eV Total energy + Delta-G solvation = -3500.563404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.91749 -39.71196 -38.41531 -37.10503 -34.69770 -32.28415 -31.74777 -31.23894 -29.92238 -27.44059 -25.26147 -24.13654 -23.31408 -22.65995 -21.20186 -19.92057 -18.18005 -17.55003 -17.32172 -16.32574 -16.21695 -15.54597 -15.40693 -15.16834 -14.85749 -14.46413 -14.36096 -13.95821 -13.54848 -13.39248 -13.10339 -12.74517 -12.46975 -12.33200 -12.28215 -12.13556 -11.81752 -11.65081 -11.46933 -11.07824 -10.78789 -10.60920 -10.47387 -9.65470 -9.44985 -8.99250 -8.75702 -8.73894 -8.56982 -6.70886 -6.42983 -4.00289 2.01939 2.38761 3.12877 3.14199 3.19508 3.32496 3.96429 3.98592 4.19790 4.37704 4.51373 4.61084 4.65038 4.90035 5.03636 5.10580 5.13724 5.29206 5.30580 5.33286 5.42892 5.58215 5.65018 5.69729 5.78226 5.91029 5.94431 6.04949 6.49241 6.66786 6.72396 7.04406 7.10357 7.14785 7.26935 7.62346 7.97887 8.07833 8.88243 9.02377 9.71561 10.74976 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.029805 B = 0.003621 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.218679 B = 7731.602654 C = 8434.698382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.089 0.911 9 O -0.177 6.177 10 C 0.066 3.934 11 C -0.155 4.155 12 C -0.183 4.183 13 C 0.307 3.693 14 N -0.734 5.734 15 C 0.147 3.853 16 H 0.100 0.900 17 C 0.039 3.961 18 N -0.688 5.688 19 C 0.053 3.947 20 C -0.141 4.141 21 C 0.083 3.917 22 H 0.091 0.909 23 F -0.210 7.210 24 N -0.499 5.499 25 C 0.067 3.933 26 H 0.269 0.731 27 H 0.137 0.863 28 H 0.120 0.880 29 H 0.399 0.601 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.348 0.652 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.726 -13.573 1.292 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.106 0.894 9 O -0.081 6.081 10 C 0.011 3.989 11 C -0.182 4.182 12 C -0.207 4.207 13 C 0.076 3.924 14 N -0.373 5.373 15 C 0.038 3.962 16 H 0.118 0.882 17 C -0.092 4.092 18 N -0.320 5.320 19 C -0.076 4.076 20 C -0.179 4.179 21 C 0.046 3.954 22 H 0.109 0.891 23 F -0.191 7.191 24 N -0.215 5.215 25 C -0.092 4.092 26 H 0.079 0.921 27 H 0.154 0.846 28 H 0.137 0.863 29 H 0.234 0.766 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.166 0.834 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 15.042 -13.791 0.717 20.420 hybrid contribution 0.584 0.764 0.833 1.273 sum 15.627 -13.027 1.550 20.404 Atomic orbital electron populations 1.70051 1.05888 1.27478 1.46413 1.25252 0.95836 0.98714 0.96719 0.85669 0.79094 0.80538 0.78246 1.19167 1.20173 1.20181 1.21292 0.91642 0.80945 1.52851 0.89351 1.83997 1.33487 1.10954 1.79613 1.20261 0.90824 0.89673 0.98161 1.21412 0.93890 0.98491 1.04435 1.21158 0.99637 0.91599 1.08336 1.17863 0.88139 0.85716 1.00688 1.43804 1.02908 1.06194 1.84403 1.21192 0.81139 0.96732 0.97101 0.88171 1.22472 0.87135 1.02414 0.97229 1.60245 1.07745 1.28952 1.35032 1.21906 0.99998 0.90197 0.95497 1.22168 0.93590 1.03575 0.98590 1.21954 0.94529 0.84986 0.93930 0.89103 1.92798 1.89117 1.62290 1.74925 1.66904 1.06011 1.30807 1.17791 1.21456 0.99140 0.84844 1.03741 0.92111 0.84582 0.86255 0.76592 0.89606 0.94259 0.83385 0.94530 0.90158 0.89966 0.88928 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.14 13.67 55.48 0.76 -24.39 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.33 29.55 -169.99 -5.02 15.31 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -10.76 9.50 30.88 0.29 -10.47 16 8 H 0.09 2.24 5.25 -52.49 -0.28 1.97 16 9 O -0.18 -4.99 9.77 -0.10 0.00 -4.99 16 10 C 0.07 1.59 6.67 -38.97 -0.26 1.33 16 11 C -0.16 -3.30 9.25 -39.14 -0.36 -3.67 16 12 C -0.18 -3.35 8.85 -39.25 -0.35 -3.70 16 13 C 0.31 5.64 7.64 -154.90 -1.18 4.46 16 14 N -0.73 -10.75 5.23 -53.81 -0.28 -11.04 16 15 C 0.15 1.72 2.11 -67.85 -0.14 1.58 16 16 H 0.10 1.21 6.44 -51.93 -0.33 0.87 16 17 C 0.04 0.44 5.95 -3.83 -0.02 0.42 16 18 N -0.69 -6.35 6.85 -113.81 -0.78 -7.13 16 19 C 0.05 0.42 6.44 -3.83 -0.02 0.40 16 20 C -0.14 -1.08 5.88 -26.65 -0.16 -1.23 16 21 C 0.08 0.81 3.74 -26.61 -0.10 0.72 16 22 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 23 F -0.21 -2.46 15.79 2.25 0.04 -2.43 16 24 N -0.50 -10.21 10.39 -12.25 -0.13 -10.34 16 25 C 0.07 1.48 11.14 -17.35 -0.19 1.28 16 26 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.14 2.84 5.75 -52.49 -0.30 2.54 16 28 H 0.12 1.86 6.07 -52.49 -0.32 1.54 16 29 H 0.40 5.78 8.36 -40.82 -0.34 5.44 16 30 H 0.09 1.10 7.68 -51.93 -0.40 0.70 16 31 H 0.04 0.48 7.88 -51.93 -0.41 0.07 16 32 H 0.35 2.71 8.90 -39.29 -0.35 2.36 16 33 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.15 3.12 8.06 -52.49 -0.42 2.70 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -30.83 308.36 -7.75 -38.58 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -4.39 Total: 9.69 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.60 Total: -7.92 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.43 Total: -52.89 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: 0.00 Total: -4.99 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.83 -7.75 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168227464.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.106 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds