Wall clock time and date at job start Tue Mar 31 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.46290 * 121.20064 * 145.63381 * 3 2 1 5 5 C 1.39694 * 122.34393 * 359.94859 * 4 3 2 6 6 C 1.36456 * 119.44794 * 180.02562 * 5 4 3 7 7 C 1.39266 * 120.91973 * 0.04096 * 6 5 4 8 8 C 1.36260 * 121.10101 * 359.96224 * 7 6 5 9 9 C 1.40367 * 119.51417 * 0.02562 * 8 7 6 10 10 C 1.40510 * 122.00957 * 179.97438 * 9 8 7 11 11 N 1.31029 * 121.11378 * 179.76954 * 10 9 8 12 12 C 1.32905 * 123.60389 * 0.53923 * 11 10 9 13 13 N 1.38320 * 119.46944 * 179.73545 * 12 11 10 14 14 C 1.46500 * 120.00173 * 359.73056 * 13 12 11 15 15 C 1.53006 * 109.46998 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00340 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00296 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46692 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47025 * 119.99570 * 21 19 17 24 24 H 1.48492 * 109.46854 * 239.99727 * 21 19 17 25 25 H 1.07999 * 120.27716 * 0.05217 * 5 4 3 26 26 H 1.07994 * 119.53693 * 180.02562 * 6 5 4 27 27 H 1.07994 * 119.44806 * 179.97438 * 7 6 5 28 28 H 1.08001 * 120.23791 * 179.97438 * 8 7 6 29 29 H 1.07999 * 119.44475 * 0.02627 * 10 9 8 30 30 H 0.97010 * 119.99917 * 179.73303 * 13 12 11 31 31 H 1.09000 * 109.47175 * 59.99995 * 14 13 12 32 32 H 1.09001 * 109.47297 * 299.99502 * 14 13 12 33 33 H 1.08993 * 109.46955 * 300.00226 * 15 14 13 34 34 H 1.09000 * 109.47050 * 60.00054 * 15 14 13 35 35 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 36 36 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 37 37 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3254 1.0339 -0.7063 5 6 2.7026 2.0653 -1.4132 6 6 3.4672 2.9982 -2.0514 7 6 4.8577 2.9349 -2.0081 8 6 5.4963 1.9419 -1.3277 9 6 4.7413 0.9655 -0.6593 10 6 5.3451 -0.0815 0.0574 11 7 4.6231 -0.9812 0.6787 12 6 3.2941 -0.9876 0.6763 13 7 2.6171 -1.9830 1.3576 14 6 3.3650 -3.0225 2.0693 15 6 2.3850 -3.9917 2.7334 16 6 3.1661 -5.0776 3.4761 17 6 2.2009 -6.0327 4.1297 18 1 1.1367 -5.8806 4.0255 19 6 2.6762 -7.1006 4.8608 20 7 3.9720 -7.2861 4.9874 21 14 1.4798 -8.2849 5.6704 22 1 0.0876 -7.8585 5.3785 23 1 1.7009 -9.6533 5.1377 24 1 1.6997 -8.2838 7.1390 25 1 1.6250 2.1243 -1.4538 26 1 2.9872 3.7964 -2.5979 27 1 5.4396 3.6855 -2.5222 28 1 6.5754 1.9060 -1.3036 29 1 6.4224 -0.1433 0.1002 30 1 1.6471 -1.9929 1.3642 31 1 3.9923 -2.5610 2.8320 32 1 3.9924 -3.5666 1.3632 33 1 1.7579 -3.4474 3.4394 34 1 1.7574 -4.4532 1.9709 35 1 3.7929 -5.6219 2.7697 36 1 3.7939 -4.6165 4.2385 37 1 4.3066 -8.0376 5.5014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:16 Heat of formation + Delta-G solvation = 69.840811 kcal Electronic energy + Delta-G solvation = -19771.115585 eV Core-core repulsion = 16705.671388 eV Total energy + Delta-G solvation = -3065.444198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93145 -38.30233 -36.59449 -35.91590 -33.72932 -32.74498 -31.57949 -31.06341 -29.06965 -26.38078 -25.20685 -23.55447 -22.99759 -22.27786 -20.52904 -19.10206 -18.10878 -17.72839 -16.44436 -16.28465 -15.57531 -15.33621 -14.97391 -14.48657 -14.38802 -14.31293 -13.82715 -13.70352 -13.26181 -13.15776 -12.81314 -12.60905 -12.34182 -12.14548 -11.85076 -11.79780 -11.42205 -10.97562 -10.79001 -10.57267 -10.46025 -9.92450 -9.80093 -9.61213 -9.49636 -9.14786 -8.95680 -8.40126 -7.54026 -6.04870 -4.07615 -0.04164 0.83810 1.44782 2.63161 2.76311 3.05365 3.18391 3.28697 3.36390 3.40645 3.84926 3.95850 4.20993 4.41233 4.43474 4.53591 4.61864 4.82577 4.89463 5.05065 5.31332 5.34874 5.44878 5.53311 5.61772 5.70336 5.72715 6.05931 6.08425 6.16170 6.19798 6.53062 6.53074 6.60184 6.88015 7.03012 7.19378 7.53157 7.59670 7.71354 7.93538 7.94838 8.35215 8.98962 9.56919 11.06441 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033868 B = 0.002890 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.537642 B = 9687.289431 C =10488.078793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.272 3.728 3 C -0.203 4.203 4 C 0.067 3.933 5 C -0.139 4.139 6 C -0.071 4.071 7 C -0.152 4.152 8 C -0.054 4.054 9 C -0.170 4.170 10 C 0.241 3.759 11 N -0.527 5.527 12 C 0.460 3.540 13 N -0.699 5.699 14 C 0.121 3.879 15 C -0.125 4.125 16 C 0.026 3.974 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.124 0.876 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.173 0.827 30 H 0.409 0.591 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.496 20.998 -14.385 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.041 4.041 3 C -0.218 4.218 4 C 0.060 3.940 5 C -0.157 4.157 6 C -0.090 4.090 7 C -0.171 4.171 8 C -0.074 4.074 9 C -0.174 4.174 10 C 0.063 3.937 11 N -0.239 5.239 12 C 0.227 3.773 13 N -0.322 5.322 14 C -0.001 4.001 15 C -0.163 4.163 16 C -0.011 4.011 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.210 1.210 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.153 0.847 29 H 0.190 0.810 30 H 0.246 0.754 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.198 19.896 -13.623 24.476 hybrid contribution -0.983 -0.071 0.044 0.986 sum 3.215 19.825 -13.579 24.244 Atomic orbital electron populations 1.81276 1.11618 1.08353 1.10293 1.25095 0.91957 0.93766 0.93286 1.16695 0.84816 1.03683 1.16575 1.18493 0.91612 0.91754 0.92101 1.20749 1.00132 0.95194 0.99656 1.21026 0.94039 0.97498 0.96479 1.20810 0.94500 0.99871 1.01872 1.20968 0.99757 0.92543 0.94128 1.18770 0.92844 1.00213 1.05574 1.23197 0.99884 0.85388 0.85197 1.66756 1.05334 1.28380 1.23473 1.18069 0.87705 0.85494 0.86004 1.45194 1.09130 1.26149 1.51743 1.21786 0.95167 0.87649 0.95522 1.21941 0.98091 0.97119 0.99187 1.19010 0.95326 0.91827 0.94952 1.21242 0.93062 1.10050 1.31715 0.92638 1.25016 0.95124 0.97826 0.96442 1.69966 1.12037 1.30195 1.41096 0.86529 0.81336 0.80938 0.79176 1.19768 1.20949 1.20955 0.85761 0.85676 0.85669 0.84717 0.80968 0.75387 0.91157 0.91163 0.92729 0.92734 0.96176 0.96175 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.87 18.54 41.84 0.78 -6.09 16 2 C 0.27 3.85 13.17 -22.47 -0.30 3.55 16 3 C -0.20 -2.63 5.96 -104.06 -0.62 -3.25 16 4 C 0.07 0.74 5.90 -104.75 -0.62 0.12 16 5 C -0.14 -1.33 9.49 -39.68 -0.38 -1.71 16 6 C -0.07 -0.52 9.96 -39.84 -0.40 -0.91 16 7 C -0.15 -0.95 9.94 -39.91 -0.40 -1.35 16 8 C -0.05 -0.35 9.81 -39.49 -0.39 -0.73 16 9 C -0.17 -1.54 5.74 -106.87 -0.61 -2.15 16 10 C 0.24 2.19 10.98 -17.04 -0.19 2.00 16 11 N -0.53 -6.71 9.39 -11.84 -0.11 -6.82 16 12 C 0.46 6.34 7.50 -154.91 -1.16 5.18 16 13 N -0.70 -10.34 5.61 -60.23 -0.34 -10.67 16 14 C 0.12 2.01 5.66 -4.04 -0.02 1.99 16 15 C -0.13 -2.46 5.27 -26.73 -0.14 -2.60 16 16 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 17 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 21 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.12 1.20 7.42 -52.49 -0.39 0.81 16 26 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 27 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 28 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 29 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.41 5.92 7.30 -40.82 -0.30 5.62 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -32.01 328.46 -9.23 -41.24 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.46 Total: -0.61 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -5.77 Total: -12.74 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 1.06 Total: -49.42 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.01 -9.23 -41.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.082 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds