Wall clock time and date at job start Tue Mar 31 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.46290 * 121.20064 * 145.63381 * 3 2 1 5 5 C 1.39694 * 122.34393 * 359.94859 * 4 3 2 6 6 C 1.36456 * 119.44794 * 180.02562 * 5 4 3 7 7 C 1.39266 * 120.91973 * 0.04096 * 6 5 4 8 8 C 1.36260 * 121.10101 * 359.96224 * 7 6 5 9 9 C 1.40367 * 119.51417 * 0.02562 * 8 7 6 10 10 C 1.40510 * 122.00957 * 179.97438 * 9 8 7 11 11 N 1.31029 * 121.11378 * 179.76954 * 10 9 8 12 12 C 1.32905 * 123.60389 * 0.53923 * 11 10 9 13 13 N 1.38320 * 119.46944 * 179.73545 * 12 11 10 14 14 C 1.46500 * 120.00173 * 359.73056 * 13 12 11 15 15 C 1.53006 * 109.46998 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00340 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00296 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46692 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47025 * 119.99570 * 21 19 17 24 24 H 1.48492 * 109.46854 * 239.99727 * 21 19 17 25 25 H 1.07999 * 120.27716 * 0.05217 * 5 4 3 26 26 H 1.07994 * 119.53693 * 180.02562 * 6 5 4 27 27 H 1.07994 * 119.44806 * 179.97438 * 7 6 5 28 28 H 1.08001 * 120.23791 * 179.97438 * 8 7 6 29 29 H 1.07999 * 119.44475 * 0.02627 * 10 9 8 30 30 H 0.97010 * 119.99917 * 179.73303 * 13 12 11 31 31 H 1.09000 * 109.47175 * 59.99995 * 14 13 12 32 32 H 1.09001 * 109.47297 * 299.99502 * 14 13 12 33 33 H 1.08993 * 109.46955 * 300.00226 * 15 14 13 34 34 H 1.09000 * 109.47050 * 60.00054 * 15 14 13 35 35 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 36 36 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 37 37 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3254 1.0339 -0.7063 5 6 2.7026 2.0653 -1.4132 6 6 3.4672 2.9982 -2.0514 7 6 4.8577 2.9349 -2.0081 8 6 5.4963 1.9419 -1.3277 9 6 4.7413 0.9655 -0.6593 10 6 5.3451 -0.0815 0.0574 11 7 4.6231 -0.9812 0.6787 12 6 3.2941 -0.9876 0.6763 13 7 2.6171 -1.9830 1.3576 14 6 3.3650 -3.0225 2.0693 15 6 2.3850 -3.9917 2.7334 16 6 3.1661 -5.0776 3.4761 17 6 2.2009 -6.0327 4.1297 18 1 1.1367 -5.8806 4.0255 19 6 2.6762 -7.1006 4.8608 20 7 3.9720 -7.2861 4.9874 21 14 1.4798 -8.2849 5.6704 22 1 0.0876 -7.8585 5.3785 23 1 1.7009 -9.6533 5.1377 24 1 1.6997 -8.2838 7.1390 25 1 1.6250 2.1243 -1.4538 26 1 2.9872 3.7964 -2.5979 27 1 5.4396 3.6855 -2.5222 28 1 6.5754 1.9060 -1.3036 29 1 6.4224 -0.1433 0.1002 30 1 1.6471 -1.9929 1.3642 31 1 3.9923 -2.5610 2.8320 32 1 3.9924 -3.5666 1.3632 33 1 1.7579 -3.4474 3.4394 34 1 1.7574 -4.4532 1.9709 35 1 3.7929 -5.6219 2.7697 36 1 3.7939 -4.6165 4.2385 37 1 4.3066 -8.0376 5.5014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:15 Heat of formation + Delta-G solvation = 51.892271 kcal Electronic energy + Delta-G solvation = -19771.893893 eV Core-core repulsion = 16705.671388 eV Total energy + Delta-G solvation = -3066.222505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72016 -39.14913 -37.66887 -37.14003 -35.45047 -33.85633 -32.97502 -31.85580 -30.19071 -28.01573 -26.00561 -25.06234 -23.80346 -23.23088 -22.23394 -19.93684 -19.07881 -18.76894 -18.25928 -17.13029 -16.57588 -16.57039 -16.27542 -15.92976 -15.60898 -15.03161 -14.83858 -14.36857 -14.35196 -14.28518 -14.17165 -13.95316 -13.80616 -13.48572 -13.14033 -12.77603 -12.75494 -12.58936 -12.35628 -12.02174 -11.82590 -11.53298 -11.28017 -11.21077 -10.58823 -10.57630 -10.43601 -9.70968 -8.47933 -8.22312 -6.32966 -0.78865 0.11406 0.73640 1.38542 1.39097 1.51909 1.54563 1.89725 1.98941 2.33383 2.39638 2.89141 3.11248 3.17288 3.39728 3.74001 3.86502 3.95990 4.05419 4.14442 4.20008 4.36597 4.41764 4.53663 4.68050 4.79163 4.88652 4.93786 5.07365 5.11207 5.13542 5.44579 5.48523 5.53409 5.59551 5.68678 5.81608 5.89237 5.99223 6.13042 6.22309 6.45702 6.83204 7.02735 7.36160 8.89682 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033868 B = 0.002890 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.537642 B = 9687.289431 C =10488.078793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.287 3.713 3 C -0.220 4.220 4 C 0.049 3.951 5 C -0.167 4.167 6 C -0.059 4.059 7 C -0.150 4.150 8 C -0.041 4.041 9 C -0.177 4.177 10 C 0.256 3.744 11 N -0.561 5.561 12 C 0.451 3.549 13 N -0.708 5.708 14 C 0.143 3.857 15 C -0.110 4.110 16 C 0.030 3.970 17 C -0.545 4.545 18 H 0.057 0.943 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.963 3.037 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.112 0.888 26 H 0.149 0.851 27 H 0.160 0.840 28 H 0.176 0.824 29 H 0.217 0.783 30 H 0.408 0.592 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.055 0.945 35 H -0.001 1.001 36 H -0.001 1.001 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 22.827 -15.638 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.025 4.025 3 C -0.235 4.235 4 C 0.043 3.957 5 C -0.185 4.185 6 C -0.078 4.078 7 C -0.168 4.168 8 C -0.061 4.061 9 C -0.181 4.181 10 C 0.080 3.920 11 N -0.275 5.275 12 C 0.221 3.779 13 N -0.333 5.333 14 C 0.020 3.980 15 C -0.148 4.148 16 C -0.008 4.008 17 C -0.583 4.583 18 H 0.075 0.925 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.788 3.212 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.130 0.870 26 H 0.167 0.833 27 H 0.177 0.823 28 H 0.194 0.806 29 H 0.233 0.767 30 H 0.244 0.756 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.750 21.770 -14.907 27.004 hybrid contribution -1.297 -0.433 0.293 1.398 sum 4.453 21.336 -14.614 26.242 Atomic orbital electron populations 1.81255 1.12617 1.09806 1.11906 1.25376 0.92265 0.92649 0.92213 1.16840 0.84073 1.04739 1.17835 1.18709 0.92758 0.91716 0.92538 1.20778 1.00008 0.96320 1.01419 1.21412 0.94877 0.96756 0.94760 1.21271 0.94089 1.00288 1.01159 1.21445 1.01648 0.90899 0.92100 1.19044 0.92085 1.01031 1.05908 1.23971 1.01485 0.83782 0.82752 1.66827 1.04756 1.30317 1.25574 1.18154 0.88475 0.85222 0.86083 1.44945 1.08900 1.26598 1.52881 1.21311 0.94047 0.87461 0.95191 1.21659 0.98002 0.96305 0.98860 1.18879 0.94914 0.92708 0.94253 1.21684 0.93634 1.10914 1.32076 0.92490 1.25928 0.96931 0.99711 0.97057 1.70082 1.13916 1.31044 1.41919 0.85430 0.79127 0.78504 0.78179 1.18995 1.20239 1.20247 0.86998 0.83324 0.82259 0.80647 0.76654 0.75574 0.91636 0.91633 0.92579 0.92583 0.98228 0.98229 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.81 18.54 19.01 0.35 -15.45 16 2 C 0.29 8.56 13.17 88.33 1.16 9.72 16 3 C -0.22 -5.87 5.96 -19.50 -0.12 -5.98 16 4 C 0.05 1.05 5.90 -19.95 -0.12 0.93 16 5 C -0.17 -3.06 9.49 22.21 0.21 -2.85 16 6 C -0.06 -0.68 9.96 22.10 0.22 -0.46 16 7 C -0.15 -1.15 9.94 22.06 0.22 -0.93 16 8 C -0.04 -0.33 9.81 22.33 0.22 -0.11 16 9 C -0.18 -2.72 5.74 -21.32 -0.12 -2.84 16 10 C 0.26 3.99 10.98 85.37 0.94 4.93 16 11 N -0.56 -13.91 9.39 -191.37 -1.80 -15.71 16 12 C 0.45 12.68 7.50 133.37 1.00 13.68 16 13 N -0.71 -21.74 5.61 -344.47 -1.93 -23.67 16 14 C 0.14 4.92 5.66 86.38 0.49 5.40 16 15 C -0.11 -4.47 5.27 30.60 0.16 -4.31 16 16 C 0.03 1.57 4.97 29.85 0.15 1.71 16 17 C -0.55 -31.10 9.11 25.60 0.23 -30.87 16 18 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 19 C 0.00 0.11 5.46 84.65 0.46 0.57 16 20 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 21 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 H 0.11 2.25 7.42 -2.91 -0.02 2.23 16 26 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 27 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 28 H 0.18 0.00 8.06 -2.91 -0.02 -0.03 16 29 H 0.22 1.25 8.06 -2.91 -0.02 1.22 16 30 H 0.41 12.42 7.30 -92.70 -0.68 11.74 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -72.20 328.46 4.46 -67.74 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.42 Total: 7.87 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 5.11 Total: -11.41 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -3.09 Total: -110.78 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -72.20 4.46 -67.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.634 kcal (2) G-P(sol) polarization free energy of solvation -72.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds