Wall clock time and date at job start Tue Mar 31 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39075 * 121.08210 * 170.49365 * 3 2 1 5 5 N 1.32074 * 121.42691 * 179.72836 * 4 3 2 6 6 C 1.31992 * 123.57223 * 359.97438 * 5 4 3 7 7 N 1.37915 * 119.62922 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99856 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47125 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47114 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47034 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00360 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99960 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00002 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00169 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47224 * 89.99888 * 15 13 11 17 17 H 1.48491 * 109.47637 * 210.00348 * 15 13 11 18 18 H 1.48501 * 109.47160 * 330.00541 * 15 13 11 19 19 C 1.41382 * 120.74653 * 359.97438 * 6 5 4 20 20 C 1.40051 * 122.10133 * 180.02562 * 19 6 5 21 21 C 1.36389 * 119.51329 * 179.97438 * 20 19 6 22 22 C 1.39157 * 121.04283 * 0.03270 * 21 20 19 23 23 C 1.36522 * 120.88751 * 359.96832 * 22 21 20 24 24 C 1.39608 * 119.42865 * 0.03084 * 23 22 21 25 25 H 1.07999 * 119.28052 * 359.74205 * 4 3 2 26 26 H 0.96995 * 120.00135 * 180.02562 * 7 6 5 27 27 H 1.08991 * 109.47202 * 299.99809 * 8 7 6 28 28 H 1.09000 * 109.47208 * 60.00130 * 8 7 6 29 29 H 1.09007 * 109.47108 * 300.00458 * 9 8 7 30 30 H 1.09000 * 109.46777 * 60.00105 * 9 8 7 31 31 H 1.08999 * 109.47651 * 300.00481 * 10 9 8 32 32 H 1.09000 * 109.47223 * 60.00365 * 10 9 8 33 33 H 0.96992 * 120.00062 * 179.97438 * 14 13 11 34 34 H 1.08004 * 120.24262 * 0.02562 * 20 19 6 35 35 H 1.08000 * 119.47681 * 180.02562 * 21 20 19 36 36 H 1.08007 * 119.55629 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.28839 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2854 1.1757 -0.1967 5 7 4.6061 1.1850 -0.1928 6 6 5.3431 0.1061 -0.0058 7 7 6.7184 0.2094 -0.0171 8 6 7.3533 1.5115 -0.2352 9 6 8.8744 1.3494 -0.2001 10 6 9.5375 2.7093 -0.4272 11 6 11.0356 2.5496 -0.3933 12 1 11.4712 1.5757 -0.2261 13 6 11.8503 3.6470 -0.5759 14 7 11.3198 4.8332 -0.7791 15 14 13.7072 3.4492 -0.5331 16 1 14.2061 3.1621 -1.9021 17 1 14.3272 4.7023 -0.0330 18 1 14.0647 2.3255 0.3696 19 6 4.7387 -1.1542 0.2070 20 6 5.4929 -2.3168 0.4089 21 6 4.8547 -3.5053 0.6098 22 6 3.4653 -3.5815 0.6168 23 6 2.7013 -2.4668 0.4231 24 6 3.3251 -1.2354 0.2147 25 1 2.7510 2.1005 -0.3559 26 1 7.2651 -0.5801 0.1194 27 1 7.0518 1.9047 -1.2059 28 1 7.0438 2.2025 0.5489 29 1 9.1756 0.9563 0.7709 30 1 9.1842 0.6582 -0.9839 31 1 9.2363 3.1029 -1.3980 32 1 9.2276 3.4002 0.3568 33 1 11.8929 5.6052 -0.9071 34 1 6.5721 -2.2724 0.4063 35 1 5.4370 -4.4015 0.7659 36 1 2.9848 -4.5354 0.7778 37 1 1.6236 -2.5370 0.4308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:55 Heat of formation + Delta-G solvation = 69.765085 kcal Electronic energy + Delta-G solvation = -19791.890813 eV Core-core repulsion = 16726.443332 eV Total energy + Delta-G solvation = -3065.447481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02247 -37.89059 -37.06522 -35.98989 -33.94463 -32.39493 -31.58652 -30.88136 -29.45281 -26.73788 -24.46047 -24.05548 -23.03336 -22.18329 -20.58600 -19.00957 -18.37354 -17.63093 -16.64117 -16.38366 -15.35795 -15.23144 -14.91029 -14.71286 -14.48321 -14.42016 -13.81969 -13.67312 -13.41282 -13.14579 -12.67135 -12.62699 -12.37350 -12.07054 -11.90398 -11.89016 -11.45945 -10.99656 -10.83411 -10.63137 -10.50967 -9.91998 -9.66909 -9.48390 -9.47742 -9.19981 -9.17465 -8.43009 -7.57131 -6.07709 -4.11095 0.09670 0.72991 1.40784 2.61959 2.79932 2.98196 3.16085 3.26822 3.33772 3.36004 3.85536 3.97162 4.21522 4.36814 4.39443 4.53007 4.58823 4.66377 5.02514 5.03874 5.28389 5.29751 5.46290 5.53304 5.62292 5.65565 5.78588 6.01212 6.03597 6.11701 6.13903 6.47409 6.49614 6.56875 6.82394 6.96910 7.16649 7.50312 7.56029 7.67615 7.90362 8.06660 8.30966 8.95397 9.53571 11.03493 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027901 B = 0.002958 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.292225 B = 9464.336445 C =10441.875307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.280 3.720 3 C -0.185 4.185 4 C 0.231 3.769 5 N -0.570 5.570 6 C 0.476 3.524 7 N -0.686 5.686 8 C 0.119 3.881 9 C -0.124 4.124 10 C 0.026 3.974 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.152 4.152 20 C -0.066 4.066 21 C -0.140 4.140 22 C -0.075 4.075 23 C -0.132 4.132 24 C 0.054 3.946 25 H 0.163 0.837 26 H 0.410 0.590 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.262 0.738 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.528 -15.503 2.563 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.034 4.034 3 C -0.195 4.195 4 C 0.077 3.923 5 N -0.291 5.291 6 C 0.225 3.775 7 N -0.311 5.311 8 C -0.003 4.003 9 C -0.162 4.162 10 C -0.012 4.012 11 C -0.563 4.563 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.157 4.157 20 C -0.086 4.086 21 C -0.158 4.158 22 C -0.094 4.094 23 C -0.150 4.150 24 C 0.048 3.952 25 H 0.180 0.820 26 H 0.248 0.752 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.697 -14.305 2.368 20.646 hybrid contribution 1.295 -1.080 0.177 1.696 sum -13.402 -15.385 2.545 20.562 Atomic orbital electron populations 1.81242 1.11888 1.07500 1.11667 1.25169 0.91973 0.93576 0.92634 1.17342 0.84940 0.94996 1.22269 1.22371 0.87915 0.95923 0.86065 1.66864 1.07067 1.29027 1.26144 1.18649 0.86090 0.87888 0.84831 1.45181 1.01818 1.12946 1.71143 1.21842 0.93933 0.82311 1.02256 1.21942 0.90734 1.02567 1.00994 1.19008 0.94884 0.89772 0.97531 1.21185 0.91380 0.94160 1.49541 0.92674 1.25022 0.98854 0.95312 0.95203 1.69954 1.35274 0.99026 1.48917 0.86586 0.85530 0.77556 0.78275 1.20634 1.21172 1.19901 1.18302 0.93261 0.93838 1.10327 1.20866 0.99608 0.91659 0.96433 1.20819 0.94610 0.98010 1.02404 1.21039 0.93933 0.98520 0.95932 1.20781 1.00139 0.91534 1.02565 1.18485 0.90945 0.92318 0.93426 0.82005 0.75221 0.90938 0.90944 0.92672 0.92673 0.96184 0.96174 0.92861 0.85219 0.85362 0.85454 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.15 18.54 41.84 0.78 -5.37 16 2 C 0.28 3.37 14.41 -22.47 -0.32 3.05 16 3 C -0.18 -2.07 5.94 -104.32 -0.62 -2.69 16 4 C 0.23 2.58 10.90 -17.14 -0.19 2.40 16 5 N -0.57 -7.52 9.39 -11.93 -0.11 -7.64 16 6 C 0.48 5.87 7.52 -155.56 -1.17 4.70 16 7 N -0.69 -8.22 5.61 -60.18 -0.34 -8.56 16 8 C 0.12 1.78 5.66 -4.04 -0.02 1.76 16 9 C -0.12 -2.19 5.27 -26.73 -0.14 -2.33 16 10 C 0.03 0.61 4.97 -27.89 -0.14 0.47 16 11 C -0.52 -14.04 9.11 -34.44 -0.31 -14.36 16 12 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 15 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.15 -1.64 5.75 -106.74 -0.61 -2.25 16 20 C -0.07 -0.56 9.51 -39.57 -0.38 -0.94 16 21 C -0.14 -1.03 9.95 -39.91 -0.40 -1.43 16 22 C -0.08 -0.57 9.96 -39.86 -0.40 -0.97 16 23 C -0.13 -1.23 9.49 -39.69 -0.38 -1.61 16 24 C 0.05 0.59 5.90 -104.77 -0.62 -0.03 16 25 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 26 H 0.41 3.94 6.56 -40.82 -0.27 3.67 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.13 0.84 6.47 -52.48 -0.34 0.50 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.13 1.12 7.42 -52.49 -0.39 0.73 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -30.91 326.99 -9.17 -40.07 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.34 Total: -1.31 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -5.79 Total: -12.72 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 1.06 Total: -46.82 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.91 -9.17 -40.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.836 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds