Wall clock time and date at job start Tue Mar 31 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36009 * 117.00035 * 2 1 4 4 C 1.38701 * 120.49869 * 0.02820 * 3 2 1 5 5 C 1.38852 * 118.46124 * 179.97438 * 4 3 2 6 6 N 1.48000 * 120.32054 * 179.97438 * 5 4 3 7 7 O 1.21803 * 119.99504 * 359.97438 * 6 5 4 8 8 O 1.21794 * 120.00341 * 179.97438 * 6 5 4 9 9 C 1.38013 * 119.36853 * 359.97438 * 5 4 3 10 10 N 1.32022 * 120.95275 * 359.73266 * 9 5 4 11 11 C 1.32300 * 121.67712 * 0.55942 * 10 9 5 12 12 N 1.39250 * 119.73415 * 179.71257 * 11 10 9 13 13 C 1.46499 * 119.99914 * 359.73168 * 12 11 10 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46678 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47258 * 119.99423 * 20 18 16 23 23 H 1.48493 * 109.47346 * 240.00028 * 20 18 16 24 24 H 1.08997 * 109.46789 * 299.99915 * 1 2 3 25 25 H 1.09000 * 109.47031 * 59.99786 * 1 2 3 26 26 H 1.08995 * 109.47096 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.76805 * 359.94701 * 4 3 2 28 28 H 1.08003 * 119.52383 * 180.02562 * 9 5 4 29 29 H 0.97000 * 119.99666 * 179.72436 * 12 11 10 30 30 H 1.09002 * 109.47391 * 59.99710 * 13 12 11 31 31 H 1.09001 * 109.46813 * 299.99767 * 13 12 11 32 32 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 33 33 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 34 34 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 35 35 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 36 36 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3012 2.3816 0.0006 5 6 1.9752 3.5956 0.0011 6 7 1.2209 4.8690 0.0012 7 8 0.0029 4.8552 0.0003 8 8 1.8180 5.9305 0.0021 9 6 3.3553 3.6036 0.0016 10 7 4.0409 2.4753 0.0068 11 6 3.4395 1.2969 0.0008 12 7 4.2025 0.1321 0.0006 13 6 5.6652 0.2146 0.0011 14 6 6.2556 -1.1969 0.0001 15 6 7.7831 -1.1107 0.0013 16 6 8.3647 -2.5010 0.0010 17 1 7.7102 -3.3601 0.0004 18 6 9.7323 -2.6762 0.0013 19 7 10.5293 -1.6300 0.0015 20 14 10.4532 -4.3995 0.0002 21 1 9.3525 -5.3964 -0.0004 22 1 11.2904 -4.5851 -1.2121 23 1 11.2896 -4.5870 1.2128 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2217 2.3490 0.0002 28 1 3.8821 4.5464 0.0024 29 1 3.7656 -0.7339 0.0003 30 1 5.9988 0.7478 0.8914 31 1 5.9992 0.7484 -0.8886 32 1 5.9215 -1.7311 0.8896 33 1 5.9220 -1.7297 -0.8903 34 1 8.1176 -0.5765 -0.8880 35 1 8.1164 -0.5781 0.8920 36 1 11.4914 -1.7533 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:03 Heat of formation + Delta-G solvation = -12.863738 kcal Electronic energy + Delta-G solvation = -20934.170107 eV Core-core repulsion = 17421.997556 eV Total energy + Delta-G solvation = -3512.172550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.27963 -41.08999 -38.66678 -36.72168 -36.58875 -33.95023 -32.62788 -31.82947 -30.19658 -28.16900 -27.06439 -25.83892 -23.97439 -22.97242 -22.26448 -20.62859 -19.82755 -18.90693 -18.09615 -17.60664 -17.32062 -17.28637 -16.42207 -16.37797 -15.20996 -15.15933 -14.83132 -14.52253 -14.12991 -13.96632 -13.49417 -12.41120 -12.30256 -12.25081 -11.98630 -11.89413 -11.63673 -11.47757 -11.21112 -11.10355 -10.88963 -10.81656 -10.63056 -10.24474 -10.02817 -9.75472 -9.59103 -9.21374 -8.45479 -7.97288 -6.09953 -4.13324 -0.25375 0.64744 1.26197 1.33110 2.58034 2.80533 3.16207 3.24641 3.32598 3.35721 3.87226 4.14126 4.23233 4.36269 4.42028 4.60345 4.70930 4.93087 5.08209 5.19704 5.26268 5.45093 5.53045 5.57815 5.96732 6.24728 6.29485 6.42096 6.56315 6.74491 6.86075 7.00745 7.53157 7.59869 7.64052 7.64459 7.87998 8.28584 8.93225 9.51544 11.01289 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029458 B = 0.002917 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.274336 B = 9597.526711 C =10516.750127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.016 3.984 4 C -0.078 4.078 5 C -0.144 4.144 6 N 0.051 4.949 7 O -0.183 6.183 8 O -0.171 6.171 9 C 0.211 3.789 10 N -0.501 5.501 11 C 0.442 3.558 12 N -0.679 5.679 13 C 0.117 3.883 14 C -0.123 4.123 15 C 0.026 3.974 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.108 0.892 27 H 0.162 0.838 28 H 0.186 0.814 29 H 0.419 0.581 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.196 6.203 -0.014 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C -0.036 4.036 4 C -0.104 4.104 5 C -0.236 4.236 6 N 0.564 4.436 7 O -0.394 6.394 8 O -0.384 6.384 9 C 0.049 3.951 10 N -0.222 5.222 11 C 0.198 3.802 12 N -0.306 5.306 13 C -0.005 4.005 14 C -0.161 4.161 15 C -0.012 4.012 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.126 0.874 27 H 0.180 0.820 28 H 0.202 0.798 29 H 0.257 0.743 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.463 5.389 -0.007 19.233 hybrid contribution -1.048 -0.804 -0.005 1.321 sum -19.511 4.585 -0.012 20.043 Atomic orbital electron populations 1.23174 0.77350 1.04783 1.01693 1.86080 1.22116 1.24314 1.89393 1.19090 0.90938 0.85529 1.08077 1.21033 1.01958 0.89123 0.98306 1.21529 0.92992 0.84052 1.25012 1.43266 1.00977 1.02393 0.96932 1.94504 0.95801 1.94260 1.54785 1.94531 1.70987 1.18679 1.54190 1.22457 0.88070 0.97452 0.87101 1.67874 1.36402 0.95802 1.22127 1.18402 0.84890 0.88406 0.88475 1.45383 1.07796 1.04566 1.72875 1.21899 0.75482 1.00442 1.02675 1.21935 1.00623 0.92442 1.01143 1.19019 0.86870 0.97568 0.97749 1.21217 0.91548 0.92365 1.51111 0.92592 1.25026 0.97322 0.96902 0.95164 1.69969 1.03633 1.29119 1.50444 0.86521 0.79161 0.84558 0.77672 1.19759 1.20939 1.20945 0.92263 0.92268 0.87404 0.82011 0.79757 0.74270 0.90962 0.90978 0.92558 0.92552 0.96169 0.96172 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.13 16 2 O -0.31 -2.88 9.74 -19.77 -0.19 -3.07 16 3 C 0.02 0.18 6.72 -38.92 -0.26 -0.08 16 4 C -0.08 -0.80 8.63 -39.18 -0.34 -1.13 16 5 C -0.14 -1.68 6.87 -79.81 -0.55 -2.23 16 6 N 0.05 0.66 4.45 34.03 0.15 0.82 16 7 O -0.18 -2.47 18.52 -29.46 -0.55 -3.01 16 8 O -0.17 -2.32 18.46 -29.46 -0.54 -2.86 16 9 C 0.21 2.41 10.70 -17.55 -0.19 2.22 16 10 N -0.50 -6.56 9.57 -12.28 -0.12 -6.67 16 11 C 0.44 5.57 7.50 -154.70 -1.16 4.41 16 12 N -0.68 -8.73 5.70 -60.26 -0.34 -9.08 16 13 C 0.12 1.80 5.70 -4.04 -0.02 1.77 16 14 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 15 C 0.03 0.61 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 20 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.06 0.29 7.70 -51.93 -0.40 -0.11 16 25 H 0.06 0.29 7.70 -51.93 -0.40 -0.11 16 26 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.16 1.32 6.08 -52.49 -0.32 1.00 16 28 H 0.19 1.74 7.60 -52.48 -0.40 1.34 16 29 H 0.42 4.79 7.82 -40.82 -0.32 4.48 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -30.59 321.29 -7.59 -38.18 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.34 Total: -1.02 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.22 Total: -8.77 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.43 Total: -40.25 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -1.28 Total: -8.94 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.59 -7.59 -38.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.316 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds