Wall clock time and date at job start Tue Mar 31 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36009 * 117.00035 * 2 1 4 4 C 1.38701 * 120.49869 * 0.02820 * 3 2 1 5 5 C 1.38852 * 118.46124 * 179.97438 * 4 3 2 6 6 N 1.48000 * 120.32054 * 179.97438 * 5 4 3 7 7 O 1.21803 * 119.99504 * 359.97438 * 6 5 4 8 8 O 1.21794 * 120.00341 * 179.97438 * 6 5 4 9 9 C 1.38013 * 119.36853 * 359.97438 * 5 4 3 10 10 N 1.32022 * 120.95275 * 359.73266 * 9 5 4 11 11 C 1.32300 * 121.67712 * 0.55942 * 10 9 5 12 12 N 1.39250 * 119.73415 * 179.71257 * 11 10 9 13 13 C 1.46499 * 119.99914 * 359.73168 * 12 11 10 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46678 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47258 * 119.99423 * 20 18 16 23 23 H 1.48493 * 109.47346 * 240.00028 * 20 18 16 24 24 H 1.08997 * 109.46789 * 299.99915 * 1 2 3 25 25 H 1.09000 * 109.47031 * 59.99786 * 1 2 3 26 26 H 1.08995 * 109.47096 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.76805 * 359.94701 * 4 3 2 28 28 H 1.08003 * 119.52383 * 180.02562 * 9 5 4 29 29 H 0.97000 * 119.99666 * 179.72436 * 12 11 10 30 30 H 1.09002 * 109.47391 * 59.99710 * 13 12 11 31 31 H 1.09001 * 109.46813 * 299.99767 * 13 12 11 32 32 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 33 33 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 34 34 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 35 35 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 36 36 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3012 2.3816 0.0006 5 6 1.9752 3.5956 0.0011 6 7 1.2209 4.8690 0.0012 7 8 0.0029 4.8552 0.0003 8 8 1.8180 5.9305 0.0021 9 6 3.3553 3.6036 0.0016 10 7 4.0409 2.4753 0.0068 11 6 3.4395 1.2969 0.0008 12 7 4.2025 0.1321 0.0006 13 6 5.6652 0.2146 0.0011 14 6 6.2556 -1.1969 0.0001 15 6 7.7831 -1.1107 0.0013 16 6 8.3647 -2.5010 0.0010 17 1 7.7102 -3.3601 0.0004 18 6 9.7323 -2.6762 0.0013 19 7 10.5293 -1.6300 0.0015 20 14 10.4532 -4.3995 0.0002 21 1 9.3525 -5.3964 -0.0004 22 1 11.2904 -4.5851 -1.2121 23 1 11.2896 -4.5870 1.2128 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2217 2.3490 0.0002 28 1 3.8821 4.5464 0.0024 29 1 3.7656 -0.7339 0.0003 30 1 5.9988 0.7478 0.8914 31 1 5.9992 0.7484 -0.8886 32 1 5.9215 -1.7311 0.8896 33 1 5.9220 -1.7297 -0.8903 34 1 8.1176 -0.5765 -0.8880 35 1 8.1164 -0.5781 0.8920 36 1 11.4914 -1.7533 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:02 Heat of formation + Delta-G solvation = -31.270412 kcal Electronic energy + Delta-G solvation = -20934.968280 eV Core-core repulsion = 17421.997556 eV Total energy + Delta-G solvation = -3512.970723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.26248 -41.98146 -39.42527 -37.89370 -37.61124 -35.65491 -33.90767 -33.12781 -31.37173 -28.92494 -28.38165 -27.01193 -25.30910 -24.02483 -23.41140 -22.19476 -20.72617 -19.90426 -19.11065 -18.60226 -18.59971 -18.07334 -18.04079 -17.16687 -16.52854 -16.34164 -16.04687 -15.82670 -15.18584 -14.79871 -14.35980 -14.29266 -13.78704 -13.70808 -12.85304 -12.79534 -12.65659 -12.59162 -12.56610 -12.42968 -12.33496 -12.25833 -12.09575 -11.54129 -11.53873 -11.21938 -11.12172 -10.71123 -10.56435 -8.91582 -8.20795 -6.31552 -1.23536 -0.19971 0.27590 0.36166 1.40599 1.41440 1.53735 1.79680 1.90610 2.24965 2.41019 2.98619 3.13496 3.29834 3.40030 3.54069 3.93246 4.10065 4.20551 4.34204 4.34280 4.40760 4.54420 4.63018 4.75105 4.93333 4.99565 5.14466 5.25986 5.48874 5.59958 5.70406 5.78390 5.84015 6.12177 6.22532 6.55601 6.70396 6.86027 7.38111 8.91202 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029458 B = 0.002917 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.274336 B = 9597.526711 C =10516.750127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.315 6.315 3 C 0.028 3.972 4 C -0.072 4.072 5 C -0.144 4.144 6 N 0.052 4.948 7 O -0.186 6.186 8 O -0.187 6.187 9 C 0.208 3.792 10 N -0.521 5.521 11 C 0.428 3.572 12 N -0.679 5.679 13 C 0.136 3.864 14 C -0.106 4.106 15 C 0.026 3.974 16 C -0.541 4.541 17 H 0.063 0.937 18 C -0.001 4.001 19 N -0.933 5.933 20 Si 0.963 3.037 21 H -0.260 1.260 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.128 0.872 27 H 0.185 0.815 28 H 0.199 0.801 29 H 0.427 0.573 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.064 0.936 34 H -0.004 1.004 35 H -0.004 1.004 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.022 4.954 -0.017 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.227 6.227 3 C -0.025 4.025 4 C -0.098 4.098 5 C -0.236 4.236 6 N 0.563 4.437 7 O -0.397 6.397 8 O -0.397 6.397 9 C 0.047 3.953 10 N -0.243 5.243 11 C 0.186 3.814 12 N -0.308 5.308 13 C 0.013 3.987 14 C -0.144 4.144 15 C -0.012 4.012 16 C -0.579 4.579 17 H 0.081 0.919 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.788 3.212 21 H -0.184 1.184 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.146 0.854 27 H 0.202 0.798 28 H 0.216 0.784 29 H 0.266 0.734 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.014 0.986 35 H 0.014 0.986 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.324 4.163 -0.010 20.746 hybrid contribution -0.585 -0.400 -0.004 0.708 sum -20.909 3.763 -0.014 21.245 Atomic orbital electron populations 1.23523 0.75229 1.06591 1.02717 1.86092 1.24230 1.23379 1.89028 1.18947 0.90206 0.86313 1.07052 1.21249 1.03046 0.88222 0.97310 1.21628 0.93054 0.83846 1.25051 1.43426 1.00960 1.02709 0.96643 1.94490 0.96099 1.94375 1.54698 1.94533 1.70974 1.19257 1.54947 1.22661 0.88262 0.97577 0.86817 1.67851 1.37312 0.96413 1.22706 1.18538 0.85791 0.88050 0.89012 1.45042 1.06485 1.05242 1.73987 1.21415 0.77172 0.98229 1.01890 1.21625 0.96467 0.94412 1.01913 1.18912 0.91039 0.95827 0.95377 1.21708 0.92090 0.93760 1.50390 0.91853 1.25965 0.97989 1.01097 0.94840 1.70101 1.03963 1.31534 1.51691 0.85420 0.78484 0.79627 0.77645 1.18411 1.20588 1.20596 0.91202 0.91202 0.85365 0.79755 0.78393 0.73371 0.91865 0.91871 0.91715 0.91703 0.98579 0.98584 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.83 113.37 1.11 1.22 16 2 O -0.31 -5.10 9.74 -93.65 -0.91 -6.01 16 3 C 0.03 0.54 6.72 22.70 0.15 0.70 16 4 C -0.07 -1.31 8.63 22.53 0.19 -1.11 16 5 C -0.14 -3.14 6.87 36.47 0.25 -2.89 16 6 N 0.05 1.28 4.45 -46.25 -0.21 1.07 16 7 O -0.19 -4.70 18.52 18.88 0.35 -4.35 16 8 O -0.19 -4.94 18.46 18.89 0.35 -4.59 16 9 C 0.21 4.58 10.70 84.61 0.91 5.48 16 10 N -0.52 -13.33 9.57 -192.77 -1.84 -15.18 16 11 C 0.43 10.32 7.50 133.11 1.00 11.31 16 12 N -0.68 -16.74 5.70 -344.55 -1.97 -18.71 16 13 C 0.14 4.17 5.70 86.38 0.49 4.66 16 14 C -0.11 -3.81 5.27 30.59 0.16 -3.65 16 15 C 0.03 1.29 4.97 29.85 0.15 1.44 16 16 C -0.54 -29.36 9.11 25.60 0.23 -29.13 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 18 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 19 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 20 Si 0.96 42.92 29.54 68.60 2.03 44.94 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 24 H 0.07 0.45 7.70 -2.39 -0.02 0.43 16 25 H 0.07 0.45 7.70 -2.39 -0.02 0.43 16 26 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.19 2.44 6.08 -2.91 -0.02 2.42 16 28 H 0.20 3.62 7.60 -2.91 -0.02 3.60 16 29 H 0.43 9.09 7.82 -92.71 -0.72 8.36 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -65.59 321.29 3.59 -62.01 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.39 Total: 7.56 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 5.11 Total: -11.55 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -3.73 Total: -88.01 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.21 Total: -14.95 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -65.59 3.59 -62.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.739 kcal (2) G-P(sol) polarization free energy of solvation -65.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds