Wall clock time and date at job start Tue Mar 31 2020 05:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36011 * 117.00244 * 2 1 4 4 C 1.38506 * 120.38885 * 0.02562 * 3 2 1 5 5 N 1.31975 * 120.78072 * 179.97438 * 4 3 2 6 6 C 1.32360 * 121.67389 * 0.02562 * 5 4 3 7 7 N 1.39260 * 119.64352 * 179.97438 * 6 5 4 8 8 C 1.46498 * 119.99769 * 180.02562 * 7 6 5 9 9 C 1.52994 * 109.47222 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47664 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47349 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00000 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99752 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99989 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 120.00203 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47073 * 89.99691 * 15 13 11 17 17 H 1.48498 * 109.46753 * 209.99685 * 15 13 11 18 18 H 1.48498 * 109.46816 * 329.99733 * 15 13 11 19 19 C 1.39050 * 120.70756 * 0.02562 * 6 5 4 20 20 C 1.38335 * 119.15606 * 359.69399 * 19 6 5 21 21 N 1.48024 * 120.77158 * 180.29388 * 20 19 6 22 22 O 1.21801 * 119.99630 * 0.27457 * 21 20 19 23 23 O 1.21799 * 120.00066 * 180.27043 * 21 20 19 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99837 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99958 * 1 2 3 27 27 H 1.08005 * 119.61282 * 0.02562 * 4 3 2 28 28 H 0.96996 * 120.00263 * 0.02562 * 7 6 5 29 29 H 1.08999 * 109.47458 * 300.00555 * 8 7 6 30 30 H 1.09009 * 109.47363 * 60.00299 * 8 7 6 31 31 H 1.09008 * 109.47018 * 299.99967 * 9 8 7 32 32 H 1.08999 * 109.47572 * 59.99649 * 9 8 7 33 33 H 1.09008 * 109.46690 * 299.99940 * 10 9 8 34 34 H 1.08999 * 109.47098 * 59.99131 * 10 9 8 35 35 H 0.97000 * 119.99647 * 180.02562 * 14 13 11 36 36 H 1.08003 * 120.41705 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.3001 2.3786 0.0005 5 7 1.8913 3.5585 0.0010 6 6 3.2097 3.6753 0.0006 7 7 3.7890 4.9417 0.0006 8 6 5.2474 5.0801 -0.0005 9 6 5.6190 6.5642 0.0004 10 6 7.1422 6.7088 -0.0014 11 6 7.5080 8.1707 -0.0011 12 1 6.7319 8.9216 0.0006 13 6 8.8337 8.5494 -0.0020 14 7 9.1531 9.8253 -0.0023 15 14 10.1763 7.2505 -0.0043 16 1 10.5308 6.9075 -1.4050 17 1 11.3758 7.7773 0.6950 18 1 9.6896 6.0344 0.6953 19 6 4.0225 2.5472 -0.0010 20 6 3.4363 1.2942 0.0043 21 7 4.2674 0.0693 0.0093 22 8 5.4822 0.1576 0.0138 23 8 3.7365 -1.0269 0.0091 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2216 2.3221 0.0014 28 1 3.2269 5.7322 0.0013 29 1 5.6584 4.6024 0.8889 30 1 5.6570 4.6032 -0.8911 31 1 5.2080 7.0422 -0.8889 32 1 5.2095 7.0408 0.8911 33 1 7.5535 6.2307 0.8877 34 1 7.5513 6.2323 -0.8922 35 1 10.0858 10.0917 -0.0033 36 1 5.0979 2.6479 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:04 Heat of formation + Delta-G solvation = -22.509139 kcal Electronic energy + Delta-G solvation = -21127.942799 eV Core-core repulsion = 17615.351993 eV Total energy + Delta-G solvation = -3512.590806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.39287 -41.87317 -39.79283 -37.66702 -37.57075 -35.42637 -34.40369 -33.54160 -30.71091 -28.89629 -28.30215 -27.98236 -25.09701 -24.08750 -23.19001 -22.07554 -20.67180 -20.01292 -19.04160 -18.95893 -18.74733 -18.46113 -17.26169 -16.99256 -16.47198 -16.33999 -16.06752 -15.78572 -15.22581 -14.97924 -14.77572 -14.28064 -13.89765 -13.76821 -12.88789 -12.88001 -12.75908 -12.68662 -12.58734 -12.52034 -12.30991 -11.87147 -11.74002 -11.65906 -11.51096 -11.33596 -11.05142 -10.91162 -10.75857 -8.72246 -8.29161 -6.33638 -1.40833 -0.19809 0.17772 0.21906 1.38773 1.40533 1.51617 1.77266 2.00548 2.28926 2.36973 3.04130 3.07124 3.21979 3.43228 3.69866 3.94067 4.01536 4.17020 4.19454 4.35901 4.41317 4.49015 4.69606 4.80465 4.86364 4.87689 5.02288 5.10849 5.44884 5.56010 5.60770 5.68251 5.91695 6.27350 6.32856 6.43923 6.71235 6.75550 7.31456 8.87481 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027017 B = 0.003285 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.131279 B = 8522.294830 C = 9527.366861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.303 6.303 3 C 0.077 3.923 4 C 0.101 3.899 5 N -0.480 5.480 6 C 0.379 3.621 7 N -0.707 5.707 8 C 0.127 3.873 9 C -0.101 4.101 10 C -0.011 4.011 11 C -0.533 4.533 12 H 0.033 0.967 13 C 0.002 3.998 14 N -0.953 5.953 15 Si 0.949 3.051 16 H -0.267 1.267 17 H -0.288 1.288 18 H -0.241 1.241 19 C -0.158 4.158 20 C -0.008 4.008 21 N 0.032 4.968 22 O -0.193 6.193 23 O -0.135 6.135 24 H 0.125 0.875 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.223 0.777 28 H 0.416 0.584 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.266 0.734 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.275 -20.441 0.018 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.214 6.214 3 C 0.024 3.976 4 C -0.062 4.062 5 N -0.198 5.198 6 C 0.144 3.856 7 N -0.340 5.340 8 C 0.003 3.997 9 C -0.139 4.139 10 C -0.049 4.049 11 C -0.571 4.571 12 H 0.052 0.948 13 C -0.194 4.194 14 N -0.594 5.594 15 Si 0.772 3.228 16 H -0.192 1.192 17 H -0.214 1.214 18 H -0.164 1.164 19 C -0.186 4.186 20 C -0.100 4.100 21 N 0.549 4.451 22 O -0.400 6.400 23 O -0.357 6.357 24 H 0.143 0.857 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.239 0.761 28 H 0.253 0.747 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -20.661 -19.157 0.019 28.176 hybrid contribution 1.344 -0.426 -0.023 1.410 sum -19.317 -19.582 -0.003 27.507 Atomic orbital electron populations 1.23692 0.74663 1.06979 1.03562 1.86390 1.24789 1.23102 1.87099 1.19562 0.89151 0.89005 0.99864 1.23449 1.02207 0.83324 0.97213 1.67198 1.09526 1.28096 1.14986 1.18058 0.87529 0.86342 0.93692 1.44633 1.06994 1.03527 1.78894 1.21606 0.77988 0.97850 1.02251 1.21442 0.96869 0.93610 1.02016 1.19467 0.93657 0.94590 0.97223 1.21492 0.92484 0.92817 1.50272 0.94832 1.26034 1.01752 0.97455 0.94186 1.70073 1.18844 1.17719 1.52760 0.85676 0.77882 0.80008 0.79218 1.19249 1.21416 1.16410 1.21162 1.03511 0.88385 1.05539 1.20779 0.88677 0.85205 1.15293 1.43550 1.01257 1.02704 0.97592 1.94563 0.96265 1.93897 1.55231 1.94548 1.75751 1.13825 1.51602 0.85666 0.90108 0.90108 0.76053 0.74654 0.90968 0.90899 0.92081 0.92085 0.95577 0.95706 0.92560 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.82 113.37 1.11 1.14 16 2 O -0.30 -5.12 8.66 -73.09 -0.63 -5.76 16 3 C 0.08 1.47 6.69 22.57 0.15 1.62 16 4 C 0.10 1.47 10.21 84.74 0.87 2.34 16 5 N -0.48 -9.51 10.39 -192.77 -2.00 -11.52 16 6 C 0.38 8.54 7.65 132.97 1.02 9.56 16 7 N -0.71 -16.02 5.74 -344.95 -1.98 -18.00 16 8 C 0.13 3.22 4.89 86.38 0.42 3.64 16 9 C -0.10 -3.35 5.27 30.59 0.16 -3.19 16 10 C -0.01 -0.49 4.04 29.85 0.12 -0.36 16 11 C -0.53 -29.51 9.66 25.60 0.25 -29.26 16 12 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 13 C 0.00 0.14 5.47 84.65 0.46 0.60 16 14 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 15 Si 0.95 43.14 27.47 68.60 1.88 45.02 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 19 C -0.16 -3.73 8.85 22.49 0.20 -3.53 16 20 C -0.01 -0.19 6.91 36.63 0.25 0.06 16 21 N 0.03 0.92 4.45 -45.84 -0.20 0.72 16 22 O -0.19 -6.00 18.54 18.88 0.35 -5.65 16 23 O -0.13 -3.95 17.38 25.45 0.44 -3.51 16 24 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.08 0.14 7.68 -2.39 -0.02 0.12 16 26 H 0.08 0.14 7.67 -2.38 -0.02 0.12 16 27 H 0.22 1.16 6.30 -2.91 -0.02 1.15 16 28 H 0.42 8.77 8.60 -92.71 -0.80 7.98 16 29 H 0.07 1.77 7.93 -2.39 -0.02 1.75 16 30 H 0.07 1.77 7.93 -2.38 -0.02 1.75 16 31 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.03 1.08 7.20 -2.38 -0.02 1.07 16 34 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 36 H 0.17 3.89 6.34 -2.91 -0.02 3.87 16 Total: -1.00 -71.27 314.74 3.44 -67.83 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.27 Total: 7.13 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 5.01 Total: -17.40 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -3.89 Total: -87.67 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.16 Total: -14.92 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.02 kcal Total: -71.27 3.44 -67.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.317 kcal (2) G-P(sol) polarization free energy of solvation -71.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds