Wall clock time and date at job start Tue Mar 31 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36013 * 116.99829 * 2 1 4 4 C 1.39256 * 120.39215 * 0.02562 * 3 2 1 5 5 C 1.38302 * 118.46187 * 179.97438 * 4 3 2 6 6 C 1.39081 * 119.15266 * 0.02562 * 5 4 3 7 7 N 1.39259 * 119.64856 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99704 * 359.97438 * 7 6 5 9 9 C 1.53001 * 109.47142 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47158 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47162 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99823 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99880 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00433 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99968 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47555 * 89.99522 * 15 13 11 17 17 H 1.48504 * 109.47015 * 209.99906 * 15 13 11 18 18 H 1.48505 * 109.46879 * 329.99278 * 15 13 11 19 19 N 1.32335 * 120.70774 * 359.97438 * 6 5 4 20 20 C 1.31998 * 121.67451 * 0.02562 * 19 6 5 21 21 N 1.48013 * 119.60535 * 180.27255 * 20 19 6 22 22 O 1.21803 * 119.99758 * 179.72848 * 21 20 19 23 23 O 1.21797 * 120.00146 * 359.73003 * 21 20 19 24 24 H 1.08998 * 109.46931 * 300.00166 * 1 2 3 25 25 H 1.08996 * 109.47231 * 59.99920 * 1 2 3 26 26 H 1.09000 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.76843 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.41970 * 179.97438 * 5 4 3 29 29 H 0.96992 * 120.00195 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.47042 * 300.00412 * 8 7 6 31 31 H 1.08997 * 109.47593 * 59.99925 * 8 7 6 32 32 H 1.08998 * 109.46728 * 299.99500 * 9 8 7 33 33 H 1.09000 * 109.46980 * 59.99852 * 9 8 7 34 34 H 1.09004 * 109.47065 * 299.99850 * 10 9 8 35 35 H 1.09005 * 109.47407 * 59.99631 * 10 9 8 36 36 H 0.96997 * 120.00163 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2960 2.3849 0.0005 5 6 1.9650 3.5954 0.0011 6 6 3.3558 3.6008 0.0005 7 7 4.0399 4.8138 0.0015 8 6 3.2947 6.0750 0.0027 9 6 4.2771 7.2480 0.0031 10 6 3.4988 8.5652 0.0036 11 6 4.4665 9.7205 0.0046 12 1 5.5302 9.5338 0.0052 13 6 3.9938 11.0156 0.0058 14 7 2.6984 11.2429 0.0055 15 14 5.1933 12.4477 0.0063 16 1 5.5106 12.8282 -1.3936 17 1 4.5819 13.6052 0.7074 18 1 6.4409 12.0481 0.7057 19 7 4.0360 2.4657 0.0000 20 6 3.4287 1.2937 -0.0005 21 7 4.2348 0.0524 0.0050 22 8 3.6818 -1.0328 0.0096 23 8 5.4511 0.1161 0.0050 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.2165 2.3502 0.0014 28 1 1.4144 4.5245 0.0011 29 1 5.0098 4.8236 0.0015 30 1 2.6674 6.1272 -0.8872 31 1 2.6675 6.1257 0.8927 32 1 4.9046 7.1959 0.8928 33 1 4.9040 7.1971 -0.8872 34 1 2.8715 8.6169 -0.8864 35 1 2.8716 8.6163 0.8936 36 1 2.3659 12.1541 0.0059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:05 Heat of formation + Delta-G solvation = -2.142696 kcal Electronic energy + Delta-G solvation = -20945.439775 eV Core-core repulsion = 17433.732124 eV Total energy + Delta-G solvation = -3511.707651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.22019 -40.89782 -39.01453 -36.50120 -36.33130 -33.77933 -32.97512 -31.88852 -30.12844 -27.90370 -26.88588 -26.41142 -23.73606 -23.25431 -22.11259 -20.64390 -19.55682 -18.83800 -18.32998 -17.63316 -17.60951 -16.60637 -16.39465 -16.22160 -15.28736 -15.28065 -14.59170 -14.31988 -14.18330 -14.14519 -13.53430 -12.48426 -12.43397 -12.13666 -11.98735 -11.86963 -11.46078 -11.35057 -11.02248 -11.00609 -10.92423 -10.67373 -10.54116 -10.27879 -10.21267 -9.87071 -9.64095 -9.27540 -8.48849 -7.85309 -6.14116 -4.17178 -0.30071 0.77559 1.13224 1.26995 2.53979 2.97489 3.17573 3.24038 3.30959 3.34116 3.93012 4.07954 4.29306 4.35535 4.52681 4.66956 4.70229 5.04669 5.11041 5.22545 5.28313 5.32810 5.41617 5.46126 5.79974 6.21523 6.35002 6.35168 6.60897 6.65065 6.79356 7.18627 7.46683 7.57333 7.57856 7.83604 7.85481 8.24725 8.89071 9.48164 10.97141 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034193 B = 0.002767 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.676832 B =10118.062480 C =10905.684448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.284 6.284 3 C 0.090 3.910 4 C -0.117 4.117 5 C -0.142 4.142 6 C 0.401 3.599 7 N -0.709 5.709 8 C 0.120 3.880 9 C -0.122 4.122 10 C 0.026 3.974 11 C -0.524 4.524 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 N -0.477 5.477 20 C 0.182 3.818 21 N 0.035 4.965 22 O -0.138 6.138 23 O -0.144 6.144 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.109 0.891 27 H 0.163 0.837 28 H 0.161 0.839 29 H 0.411 0.589 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.457 -19.107 -0.012 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.194 6.194 3 C 0.035 3.965 4 C -0.144 4.144 5 C -0.168 4.168 6 C 0.159 3.841 7 N -0.342 5.342 8 C -0.003 4.003 9 C -0.160 4.160 10 C -0.012 4.012 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 N -0.200 5.200 20 C -0.034 4.034 21 N 0.556 4.444 22 O -0.353 6.353 23 O -0.361 6.361 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.180 0.820 28 H 0.178 0.822 29 H 0.247 0.753 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.134 -18.420 -0.010 19.753 hybrid contribution 0.114 0.797 -0.011 0.805 sum -7.020 -17.623 -0.020 18.969 Atomic orbital electron populations 1.23254 0.77653 1.05045 1.01572 1.86429 1.21783 1.23579 1.87604 1.19105 0.89961 0.87180 1.00278 1.21582 1.01374 0.90073 1.01334 1.21864 0.93150 0.99986 1.01837 1.18013 0.88160 0.85069 0.92867 1.45025 1.09744 1.01233 1.78241 1.21875 0.95952 0.81225 1.01271 1.21894 0.97958 0.94526 1.01582 1.19028 0.95413 0.89185 0.97567 1.21185 0.93082 0.90868 1.51136 0.92544 1.25011 0.95163 0.99094 0.95074 1.69945 1.12182 1.20746 1.50508 0.86568 0.81177 0.81933 0.78204 1.20578 1.21145 1.19811 1.65738 1.39873 0.95697 1.18683 1.20286 0.84480 0.86309 1.12322 1.43240 1.01188 1.01600 0.98386 1.94573 1.74525 1.13394 1.52822 1.94563 0.95307 1.93871 1.52378 0.92199 0.92192 0.87231 0.81972 0.82172 0.75271 0.91681 0.91675 0.92285 0.92289 0.96264 0.96257 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.83 101.05 0.99 1.10 16 2 O -0.28 -2.96 8.49 -42.03 -0.36 -3.32 16 3 C 0.09 1.03 6.68 -39.12 -0.26 0.77 16 4 C -0.12 -1.01 9.13 -39.18 -0.36 -1.36 16 5 C -0.14 -1.42 9.33 -39.25 -0.37 -1.78 16 6 C 0.40 5.16 7.65 -154.84 -1.18 3.98 16 7 N -0.71 -9.13 5.74 -60.38 -0.35 -9.48 16 8 C 0.12 1.62 4.89 -4.04 -0.02 1.60 16 9 C -0.12 -2.12 5.27 -26.73 -0.14 -2.26 16 10 C 0.03 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -13.92 9.11 -34.44 -0.31 -14.24 16 12 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 15 Si 0.89 20.80 29.54 -169.99 -5.02 15.77 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 N -0.48 -7.11 10.07 -9.34 -0.09 -7.21 16 20 C 0.18 2.66 7.78 -146.00 -1.14 1.52 16 21 N 0.04 0.57 4.45 32.94 0.15 0.71 16 22 O -0.14 -2.16 17.20 -36.53 -0.63 -2.79 16 23 O -0.14 -2.47 19.03 -29.46 -0.56 -3.03 16 24 H 0.06 0.23 7.69 -51.93 -0.40 -0.17 16 25 H 0.06 0.23 7.70 -51.93 -0.40 -0.17 16 26 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.16 0.77 6.44 -52.49 -0.34 0.43 16 28 H 0.16 1.28 6.70 -52.49 -0.35 0.93 16 29 H 0.41 5.26 8.60 -40.82 -0.35 4.90 16 30 H 0.06 0.84 7.93 -51.93 -0.41 0.42 16 31 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -31.67 318.97 -8.66 -40.33 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.32 Total: -2.27 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.02 Total: -8.74 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.44 Total: -40.76 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -1.55 Total: -9.14 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.67 -8.66 -40.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.188 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds