Wall clock time and date at job start Tue Mar 31 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36013 * 116.99829 * 2 1 4 4 C 1.39256 * 120.39215 * 0.02562 * 3 2 1 5 5 C 1.38302 * 118.46187 * 179.97438 * 4 3 2 6 6 C 1.39081 * 119.15266 * 0.02562 * 5 4 3 7 7 N 1.39259 * 119.64856 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99704 * 359.97438 * 7 6 5 9 9 C 1.53001 * 109.47142 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47158 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47162 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99823 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99880 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00433 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99968 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47555 * 89.99522 * 15 13 11 17 17 H 1.48504 * 109.47015 * 209.99906 * 15 13 11 18 18 H 1.48505 * 109.46879 * 329.99278 * 15 13 11 19 19 N 1.32335 * 120.70774 * 359.97438 * 6 5 4 20 20 C 1.31998 * 121.67451 * 0.02562 * 19 6 5 21 21 N 1.48013 * 119.60535 * 180.27255 * 20 19 6 22 22 O 1.21803 * 119.99758 * 179.72848 * 21 20 19 23 23 O 1.21797 * 120.00146 * 359.73003 * 21 20 19 24 24 H 1.08998 * 109.46931 * 300.00166 * 1 2 3 25 25 H 1.08996 * 109.47231 * 59.99920 * 1 2 3 26 26 H 1.09000 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.76843 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.41970 * 179.97438 * 5 4 3 29 29 H 0.96992 * 120.00195 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.47042 * 300.00412 * 8 7 6 31 31 H 1.08997 * 109.47593 * 59.99925 * 8 7 6 32 32 H 1.08998 * 109.46728 * 299.99500 * 9 8 7 33 33 H 1.09000 * 109.46980 * 59.99852 * 9 8 7 34 34 H 1.09004 * 109.47065 * 299.99850 * 10 9 8 35 35 H 1.09005 * 109.47407 * 59.99631 * 10 9 8 36 36 H 0.96997 * 120.00163 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2960 2.3849 0.0005 5 6 1.9650 3.5954 0.0011 6 6 3.3558 3.6008 0.0005 7 7 4.0399 4.8138 0.0015 8 6 3.2947 6.0750 0.0027 9 6 4.2771 7.2480 0.0031 10 6 3.4988 8.5652 0.0036 11 6 4.4665 9.7205 0.0046 12 1 5.5302 9.5338 0.0052 13 6 3.9938 11.0156 0.0058 14 7 2.6984 11.2429 0.0055 15 14 5.1933 12.4477 0.0063 16 1 5.5106 12.8282 -1.3936 17 1 4.5819 13.6052 0.7074 18 1 6.4409 12.0481 0.7057 19 7 4.0360 2.4657 0.0000 20 6 3.4287 1.2937 -0.0005 21 7 4.2348 0.0524 0.0050 22 8 3.6818 -1.0328 0.0096 23 8 5.4511 0.1161 0.0050 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.2165 2.3502 0.0014 28 1 1.4144 4.5245 0.0011 29 1 5.0098 4.8236 0.0015 30 1 2.6674 6.1272 -0.8872 31 1 2.6675 6.1257 0.8927 32 1 4.9046 7.1959 0.8928 33 1 4.9040 7.1971 -0.8872 34 1 2.8715 8.6169 -0.8864 35 1 2.8716 8.6163 0.8936 36 1 2.3659 12.1541 0.0059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:05 Heat of formation + Delta-G solvation = -20.939185 kcal Electronic energy + Delta-G solvation = -20946.254852 eV Core-core repulsion = 17433.732124 eV Total energy + Delta-G solvation = -3512.522728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.30279 -41.83228 -39.82555 -37.66243 -37.47436 -35.48299 -33.82526 -33.42996 -31.28144 -28.67699 -28.20871 -27.45604 -25.19473 -24.20820 -23.22699 -22.12785 -20.57039 -19.95855 -19.09884 -18.75749 -18.68225 -18.36653 -17.47931 -16.94250 -16.50944 -16.40109 -16.08518 -15.27119 -15.23748 -14.93333 -14.29669 -14.16546 -13.74844 -13.73505 -12.85832 -12.76020 -12.66259 -12.57981 -12.54156 -12.39647 -12.35431 -12.24691 -11.76273 -11.48136 -11.32292 -11.25190 -11.15208 -10.87279 -10.53899 -8.79447 -8.20705 -6.29782 -1.32325 -0.03235 0.12564 0.21091 1.40942 1.41908 1.51994 1.75185 2.07154 2.27143 2.41560 3.13999 3.15346 3.30999 3.45101 3.67793 4.08594 4.23924 4.30543 4.35483 4.42121 4.52865 4.57239 4.72886 4.82579 4.96778 4.98722 5.15636 5.17121 5.51930 5.61096 5.74893 5.86086 5.91322 6.18955 6.27148 6.51946 6.77714 6.87108 7.39465 8.90592 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034193 B = 0.002767 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.676832 B =10118.062480 C =10905.684448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.303 6.303 3 C 0.110 3.890 4 C -0.099 4.099 5 C -0.126 4.126 6 C 0.388 3.612 7 N -0.714 5.714 8 C 0.135 3.865 9 C -0.109 4.109 10 C 0.028 3.972 11 C -0.545 4.545 12 H 0.057 0.943 13 C 0.004 3.996 14 N -0.929 5.929 15 Si 0.956 3.044 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.267 1.267 19 N -0.512 5.512 20 C 0.140 3.860 21 N 0.037 4.963 22 O -0.129 6.129 23 O -0.202 6.202 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.212 0.788 28 H 0.188 0.812 29 H 0.408 0.592 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.003 0.997 35 H 0.003 0.997 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 -19.060 -0.019 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.214 6.214 3 C 0.054 3.946 4 C -0.126 4.126 5 C -0.151 4.151 6 C 0.146 3.854 7 N -0.348 5.348 8 C 0.012 3.988 9 C -0.147 4.147 10 C -0.009 4.009 11 C -0.583 4.583 12 H 0.075 0.925 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.782 3.218 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.191 1.191 19 N -0.236 5.236 20 C -0.074 4.074 21 N 0.551 4.449 22 O -0.350 6.350 23 O -0.406 6.406 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.143 0.857 27 H 0.229 0.771 28 H 0.205 0.795 29 H 0.244 0.756 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.234 -18.404 -0.017 20.591 hybrid contribution 0.559 0.723 -0.009 0.914 sum -8.675 -17.682 -0.026 19.695 Atomic orbital electron populations 1.23705 0.74623 1.06932 1.03600 1.86428 1.24885 1.23319 1.86718 1.19303 0.88940 0.88671 0.97673 1.22103 1.03333 0.88082 0.99043 1.22259 0.91838 1.01718 0.99272 1.18259 0.89328 0.84252 0.93609 1.44850 1.09601 1.01165 1.79167 1.21592 0.94752 0.80020 1.02454 1.21601 0.98064 0.93553 1.01470 1.18909 0.94917 0.91259 0.95858 1.21696 0.93819 0.92310 1.50440 0.92521 1.25842 0.96763 1.01878 0.94904 1.70048 1.13824 1.21350 1.51672 0.85576 0.79179 0.78706 0.78376 1.19994 1.20832 1.19130 1.65475 1.41346 0.96420 1.20404 1.20337 0.85333 0.85408 1.16328 1.43597 1.01166 1.02414 0.97717 1.94509 1.74293 1.14499 1.51719 1.94547 0.96443 1.94262 1.55391 0.90065 0.90057 0.85735 0.77098 0.79466 0.75635 0.90485 0.90481 0.92446 0.92428 0.97877 0.97876 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.83 113.37 1.11 1.14 16 2 O -0.30 -5.52 8.49 -72.43 -0.61 -6.14 16 3 C 0.11 2.26 6.68 22.57 0.15 2.41 16 4 C -0.10 -1.27 9.13 22.53 0.21 -1.06 16 5 C -0.13 -2.03 9.33 22.49 0.21 -1.82 16 6 C 0.39 9.41 7.65 132.98 1.02 10.43 16 7 N -0.71 -17.52 5.74 -344.94 -1.98 -19.50 16 8 C 0.13 3.38 4.89 86.38 0.42 3.80 16 9 C -0.11 -3.71 5.27 30.59 0.16 -3.55 16 10 C 0.03 1.30 4.97 29.85 0.15 1.45 16 11 C -0.54 -28.92 9.11 25.60 0.23 -28.68 16 12 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 13 C 0.00 0.24 5.46 84.65 0.46 0.70 16 14 N -0.93 -53.16 13.29 21.45 0.28 -52.88 16 15 Si 0.96 42.44 29.54 68.60 2.03 44.46 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 N -0.51 -15.37 10.07 -183.46 -1.85 -17.22 16 20 C 0.14 4.06 7.78 129.66 1.01 5.07 16 21 N 0.04 1.23 4.45 -49.69 -0.22 1.01 16 22 O -0.13 -4.12 17.20 25.64 0.44 -3.68 16 23 O -0.20 -7.47 19.03 18.89 0.36 -7.11 16 24 H 0.08 0.19 7.69 -2.39 -0.02 0.18 16 25 H 0.08 0.19 7.70 -2.39 -0.02 0.18 16 26 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.21 0.57 6.44 -2.91 -0.02 0.55 16 28 H 0.19 2.04 6.70 -2.91 -0.02 2.02 16 29 H 0.41 10.37 8.60 -92.71 -0.80 9.57 16 30 H 0.08 1.77 7.93 -2.39 -0.02 1.75 16 31 H 0.08 1.77 7.93 -2.39 -0.02 1.75 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 36 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -71.65 318.97 3.90 -67.75 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 0.32 Total: 3.41 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 5.13 Total: -10.11 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -3.76 Total: -88.59 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.19 Total: -16.92 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -71.65 3.90 -67.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.811 kcal (2) G-P(sol) polarization free energy of solvation -71.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds