Wall clock time and date at job start Tue Mar 31 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35743 * 117.00556 * 2 1 4 4 C 1.39494 * 120.80138 * 359.71381 * 3 2 1 5 5 C 1.37802 * 119.26107 * 180.30320 * 4 3 2 6 6 N 1.32061 * 120.91170 * 359.97379 * 5 4 3 7 7 C 1.32489 * 121.75959 * 0.02562 * 6 5 4 8 8 N 1.39025 * 119.67801 * 179.97438 * 7 6 5 9 9 C 1.46503 * 119.99875 * 0.02562 * 8 7 6 10 10 C 1.52999 * 109.47172 * 179.97438 * 9 8 7 11 11 C 1.52992 * 109.47023 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47256 * 179.97438 * 11 10 9 13 13 H 1.08009 * 119.99949 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00460 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00269 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99846 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47062 * 90.00123 * 16 14 12 18 18 H 1.48504 * 109.47276 * 210.00012 * 16 14 12 19 19 H 1.48494 * 109.47040 * 330.00082 * 16 14 12 20 20 C 1.38901 * 120.64877 * 0.02562 * 7 6 5 21 21 N 1.48004 * 120.48813 * 180.02562 * 20 7 6 22 22 O 1.21801 * 119.99629 * 269.97698 * 21 20 7 23 23 O 1.21798 * 120.00319 * 89.97690 * 21 20 7 24 24 H 1.09004 * 109.47144 * 300.00186 * 1 2 3 25 25 H 1.08998 * 109.47384 * 59.99978 * 1 2 3 26 26 H 1.08999 * 109.47591 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.36674 * 0.28065 * 4 3 2 28 28 H 1.07999 * 119.54586 * 179.97438 * 5 4 3 29 29 H 0.96997 * 119.99870 * 180.02562 * 8 7 6 30 30 H 1.09005 * 109.46562 * 299.99800 * 9 8 7 31 31 H 1.08997 * 109.47173 * 59.99758 * 9 8 7 32 32 H 1.09000 * 109.46923 * 300.00272 * 10 9 8 33 33 H 1.09010 * 109.47046 * 59.99666 * 10 9 8 34 34 H 1.09000 * 109.47789 * 300.00105 * 11 10 9 35 35 H 1.09002 * 109.47343 * 59.99835 * 11 10 9 36 36 H 0.97003 * 120.00079 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3021 2.3899 -0.0060 5 6 1.9606 3.6004 -0.0122 6 7 3.2801 3.6549 -0.0120 7 6 4.0234 2.5581 -0.0064 8 7 5.4094 2.6659 -0.0069 9 6 6.0413 3.9876 -0.0131 10 6 7.5627 3.8256 -0.0118 11 6 8.2226 5.2059 -0.0189 12 6 9.7211 5.0463 -0.0170 13 1 10.1591 4.0590 -0.0117 14 6 10.5331 6.1606 -0.0220 15 7 11.8409 6.0213 -0.0208 16 14 9.7757 7.8681 -0.0305 17 1 9.5745 8.3273 1.3673 18 1 10.6837 8.8089 -0.7347 19 1 8.4670 7.8256 -0.7308 20 6 3.4314 1.3016 -0.0010 21 7 4.2651 0.0787 0.0058 22 8 4.6090 -0.4297 -1.0462 23 8 4.6074 -0.4192 1.0634 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2226 2.3555 -0.0061 28 1 1.3898 4.5172 -0.0172 29 1 5.9581 1.8660 -0.0032 30 1 5.7344 4.5328 -0.9057 31 1 5.7345 4.5412 0.8742 32 1 7.8692 3.2804 0.8809 33 1 7.8699 3.2717 -0.8991 34 1 7.9161 5.7507 -0.9119 35 1 7.9154 5.7601 0.8680 36 1 12.4122 6.8052 -0.0247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168428021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:16 Heat of formation + Delta-G solvation = -5.165814 kcal Electronic energy + Delta-G solvation = -21396.462823 eV Core-core repulsion = 17884.624080 eV Total energy + Delta-G solvation = -3511.838743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.35362 -40.92417 -39.25256 -36.59227 -36.47003 -33.90690 -32.70781 -31.93544 -30.32880 -28.37019 -27.17908 -26.41155 -23.75870 -23.03050 -22.14754 -20.52220 -19.58398 -18.79575 -18.74445 -18.40678 -16.98903 -16.82374 -16.58742 -16.21951 -15.38230 -15.34668 -15.00007 -14.55883 -14.23751 -14.02330 -13.52139 -12.72404 -12.60911 -12.31474 -12.15454 -12.01154 -11.66194 -11.32843 -11.18550 -11.11809 -11.08168 -10.62129 -10.20817 -10.06091 -9.91786 -9.77012 -9.74471 -9.27118 -8.58493 -8.35841 -6.08363 -4.07735 0.37297 0.49994 0.79599 1.32189 2.17461 2.85272 3.13933 3.28127 3.35772 3.38528 4.01089 4.06908 4.21826 4.39616 4.41215 4.51815 4.53066 4.85069 4.98535 5.23912 5.24847 5.35549 5.50686 5.54450 5.86424 6.10472 6.26727 6.32709 6.44660 6.63508 6.72209 6.86126 7.15230 7.28820 7.57796 7.60719 7.71880 8.47719 8.95606 9.52924 11.04906 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029295 B = 0.003440 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.562394 B = 8137.938894 C = 8944.208723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.258 3.742 4 C -0.324 4.324 5 C 0.224 3.776 6 N -0.538 5.538 7 C 0.487 3.513 8 N -0.699 5.699 9 C 0.122 3.878 10 C -0.118 4.118 11 C -0.007 4.007 12 C -0.524 4.524 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.901 5.901 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.198 4.198 21 N 0.035 4.965 22 O -0.139 6.139 23 O -0.140 6.140 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.155 0.845 28 H 0.177 0.823 29 H 0.410 0.590 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.015 0.985 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.267 -7.979 0.003 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.202 3.798 4 C -0.348 4.348 5 C 0.064 3.936 6 N -0.260 5.260 7 C 0.245 3.755 8 N -0.325 5.325 9 C 0.000 4.000 10 C -0.156 4.156 11 C -0.045 4.045 12 C -0.562 4.562 13 H 0.090 0.910 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.288 4.288 21 N 0.565 4.435 22 O -0.362 6.362 23 O -0.362 6.362 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.128 0.872 27 H 0.172 0.828 28 H 0.194 0.806 29 H 0.247 0.753 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.033 0.967 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.874 -6.486 -0.009 27.646 hybrid contribution -0.538 -0.409 0.028 0.677 sum -27.413 -6.895 0.019 28.266 Atomic orbital electron populations 1.23300 0.75935 1.05197 1.02423 1.86120 1.23596 1.25457 1.86490 1.18432 0.88287 0.86228 0.86838 1.21861 1.01820 0.91287 1.19865 1.22633 0.88638 0.97673 0.84679 1.67732 1.07351 1.26621 1.24334 1.17691 0.86864 0.85187 0.85755 1.45318 1.00832 1.11628 1.74738 1.21856 0.94292 0.81242 1.02615 1.21779 0.90093 1.01625 1.02133 1.19469 0.96772 0.91561 0.96688 1.21084 0.88822 0.95011 1.51291 0.90951 1.25030 0.94712 0.99267 0.94440 1.69914 1.03144 1.30174 1.50774 0.86763 0.79564 0.84326 0.78551 1.20231 1.21329 1.18937 1.20467 0.89000 0.85076 1.34275 1.43091 0.99163 1.01040 1.00240 1.94560 1.57218 1.63189 1.21240 1.94560 1.57298 1.63901 1.20460 0.91468 0.91457 0.87176 0.82792 0.80609 0.75308 0.90926 0.90939 0.91900 0.91879 0.96221 0.96662 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.84 101.05 0.99 1.12 16 2 O -0.31 -3.19 10.32 -18.94 -0.20 -3.39 16 3 C 0.26 2.90 6.73 -38.86 -0.26 2.64 16 4 C -0.32 -2.56 9.10 -39.27 -0.36 -2.91 16 5 C 0.22 1.93 11.17 -17.61 -0.20 1.73 16 6 N -0.54 -6.83 9.56 -12.51 -0.12 -6.95 16 7 C 0.49 6.94 7.47 -155.01 -1.16 5.78 16 8 N -0.70 -10.54 5.70 -60.46 -0.34 -10.88 16 9 C 0.12 1.95 5.69 -4.04 -0.02 1.92 16 10 C -0.12 -2.24 5.27 -26.74 -0.14 -2.38 16 11 C -0.01 -0.16 4.04 -27.89 -0.11 -0.27 16 12 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 13 H 0.07 2.20 7.99 -52.48 -0.42 1.79 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 16 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 20 C -0.20 -2.78 6.22 -79.46 -0.49 -3.28 16 21 N 0.04 0.55 3.29 34.20 0.11 0.66 16 22 O -0.14 -2.29 19.25 -29.46 -0.57 -2.85 16 23 O -0.14 -2.29 19.25 -29.46 -0.57 -2.86 16 24 H 0.07 0.22 7.72 -51.93 -0.40 -0.18 16 25 H 0.07 0.22 7.70 -51.93 -0.40 -0.18 16 26 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.15 0.64 6.46 -52.48 -0.34 0.30 16 28 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 29 H 0.41 6.17 7.70 -40.82 -0.31 5.86 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 34 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 35 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 319.62 15.07 4.82 4.82 Total: -1.00 -33.71 319.62 -7.28 -40.99 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.34 Total: -0.37 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.18 Total: -8.96 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.42 Total: -44.18 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -1.33 Total: -9.10 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.71 -7.28 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.825 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds