Wall clock time and date at job start Tue Mar 31 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35743 * 117.00556 * 2 1 4 4 C 1.39494 * 120.80138 * 359.71381 * 3 2 1 5 5 C 1.37802 * 119.26107 * 180.30320 * 4 3 2 6 6 N 1.32061 * 120.91170 * 359.97379 * 5 4 3 7 7 C 1.32489 * 121.75959 * 0.02562 * 6 5 4 8 8 N 1.39025 * 119.67801 * 179.97438 * 7 6 5 9 9 C 1.46503 * 119.99875 * 0.02562 * 8 7 6 10 10 C 1.52999 * 109.47172 * 179.97438 * 9 8 7 11 11 C 1.52992 * 109.47023 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47256 * 179.97438 * 11 10 9 13 13 H 1.08009 * 119.99949 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00460 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00269 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99846 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47062 * 90.00123 * 16 14 12 18 18 H 1.48504 * 109.47276 * 210.00012 * 16 14 12 19 19 H 1.48494 * 109.47040 * 330.00082 * 16 14 12 20 20 C 1.38901 * 120.64877 * 0.02562 * 7 6 5 21 21 N 1.48004 * 120.48813 * 180.02562 * 20 7 6 22 22 O 1.21801 * 119.99629 * 269.97698 * 21 20 7 23 23 O 1.21798 * 120.00319 * 89.97690 * 21 20 7 24 24 H 1.09004 * 109.47144 * 300.00186 * 1 2 3 25 25 H 1.08998 * 109.47384 * 59.99978 * 1 2 3 26 26 H 1.08999 * 109.47591 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.36674 * 0.28065 * 4 3 2 28 28 H 1.07999 * 119.54586 * 179.97438 * 5 4 3 29 29 H 0.96997 * 119.99870 * 180.02562 * 8 7 6 30 30 H 1.09005 * 109.46562 * 299.99800 * 9 8 7 31 31 H 1.08997 * 109.47173 * 59.99758 * 9 8 7 32 32 H 1.09000 * 109.46923 * 300.00272 * 10 9 8 33 33 H 1.09010 * 109.47046 * 59.99666 * 10 9 8 34 34 H 1.09000 * 109.47789 * 300.00105 * 11 10 9 35 35 H 1.09002 * 109.47343 * 59.99835 * 11 10 9 36 36 H 0.97003 * 120.00079 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3021 2.3899 -0.0060 5 6 1.9606 3.6004 -0.0122 6 7 3.2801 3.6549 -0.0120 7 6 4.0234 2.5581 -0.0064 8 7 5.4094 2.6659 -0.0069 9 6 6.0413 3.9876 -0.0131 10 6 7.5627 3.8256 -0.0118 11 6 8.2226 5.2059 -0.0189 12 6 9.7211 5.0463 -0.0170 13 1 10.1591 4.0590 -0.0117 14 6 10.5331 6.1606 -0.0220 15 7 11.8409 6.0213 -0.0208 16 14 9.7757 7.8681 -0.0305 17 1 9.5745 8.3273 1.3673 18 1 10.6837 8.8089 -0.7347 19 1 8.4670 7.8256 -0.7308 20 6 3.4314 1.3016 -0.0010 21 7 4.2651 0.0787 0.0058 22 8 4.6090 -0.4297 -1.0462 23 8 4.6074 -0.4192 1.0634 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2226 2.3555 -0.0061 28 1 1.3898 4.5172 -0.0172 29 1 5.9581 1.8660 -0.0032 30 1 5.7344 4.5328 -0.9057 31 1 5.7345 4.5412 0.8742 32 1 7.8692 3.2804 0.8809 33 1 7.8699 3.2717 -0.8991 34 1 7.9161 5.7507 -0.9119 35 1 7.9154 5.7601 0.8680 36 1 12.4122 6.8052 -0.0247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:16 Heat of formation + Delta-G solvation = -28.023739 kcal Electronic energy + Delta-G solvation = -21397.454017 eV Core-core repulsion = 17884.624080 eV Total energy + Delta-G solvation = -3512.829937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.44610 -41.79608 -40.03314 -37.75882 -37.68577 -35.59855 -33.95758 -33.36736 -31.46503 -29.12802 -28.50308 -27.46156 -25.10820 -24.08959 -23.23029 -22.18091 -20.62710 -19.99135 -19.60476 -19.43600 -18.86637 -17.87890 -17.28451 -17.23026 -16.60461 -16.48322 -15.95688 -15.69017 -15.34160 -15.30823 -14.79535 -14.13097 -13.91082 -13.78218 -12.94754 -12.88682 -12.87461 -12.82999 -12.68591 -12.38464 -12.34175 -11.97052 -11.81052 -11.73806 -11.42746 -11.37525 -10.99954 -10.77842 -10.56351 -9.32734 -8.30466 -6.36256 -0.73604 -0.45102 -0.01679 0.26977 1.37572 1.39372 1.40595 1.51834 1.96342 2.34030 2.36431 3.04956 3.23766 3.31067 3.48728 3.53967 3.94058 4.10479 4.20339 4.28184 4.28915 4.41548 4.63300 4.65776 4.74034 4.81283 4.93760 4.98037 5.03733 5.36697 5.49083 5.57469 5.65442 5.74615 5.80512 6.24913 6.32125 6.70562 6.71858 7.28614 8.86499 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029295 B = 0.003440 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.562394 B = 8137.938894 C = 8944.208723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.333 6.333 3 C 0.248 3.752 4 C -0.296 4.296 5 C 0.225 3.775 6 N -0.556 5.556 7 C 0.473 3.527 8 N -0.713 5.713 9 C 0.142 3.858 10 C -0.109 4.109 11 C -0.004 4.004 12 C -0.538 4.538 13 H 0.028 0.972 14 C 0.001 3.999 15 N -0.953 5.953 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.240 1.240 20 C -0.223 4.223 21 N 0.039 4.961 22 O -0.159 6.159 23 O -0.160 6.160 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.123 0.877 27 H 0.201 0.799 28 H 0.224 0.776 29 H 0.405 0.595 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.688 -6.024 -0.002 32.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.243 6.243 3 C 0.192 3.808 4 C -0.319 4.319 5 C 0.067 3.933 6 N -0.280 5.280 7 C 0.233 3.767 8 N -0.340 5.340 9 C 0.020 3.980 10 C -0.147 4.147 11 C -0.042 4.042 12 C -0.576 4.576 13 H 0.046 0.954 14 C -0.195 4.195 15 N -0.594 5.594 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.163 1.163 20 C -0.314 4.314 21 N 0.566 4.434 22 O -0.381 6.381 23 O -0.381 6.381 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.141 0.859 27 H 0.218 0.782 28 H 0.240 0.760 29 H 0.241 0.759 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -31.363 -4.563 -0.014 31.694 hybrid contribution 0.695 -1.132 0.031 1.329 sum -30.668 -5.696 0.018 31.193 Atomic orbital electron populations 1.23729 0.73060 1.06902 1.04365 1.86111 1.26570 1.25436 1.86170 1.18737 0.87440 0.87810 0.86860 1.22381 1.03757 0.89445 1.16354 1.23498 0.87414 0.99822 0.82556 1.67803 1.09293 1.25809 1.25063 1.17778 0.86453 0.85776 0.86705 1.45135 1.01631 1.10767 1.76496 1.21467 0.91626 0.81930 1.02989 1.21557 0.92540 0.99202 1.01412 1.19393 0.93402 0.94034 0.97371 1.21473 0.91974 0.93312 1.50854 0.95352 1.26098 0.95056 1.04488 0.93903 1.70084 1.05079 1.31746 1.52455 0.85578 0.79482 0.77774 0.79335 1.19005 1.21132 1.16331 1.20773 0.90086 0.83739 1.36758 1.43424 0.98817 1.01508 0.99680 1.94532 1.57916 1.64178 1.21432 1.94532 1.57990 1.64877 1.20662 0.89426 0.89408 0.85902 0.78211 0.75985 0.75942 0.90522 0.90468 0.92716 0.92732 0.95328 0.95460 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.19 16 2 O -0.33 -6.27 10.32 -90.68 -0.94 -7.20 16 3 C 0.25 5.02 6.73 22.74 0.15 5.17 16 4 C -0.30 -3.32 9.10 22.47 0.20 -3.11 16 5 C 0.22 2.86 11.17 84.56 0.94 3.80 16 6 N -0.56 -12.66 9.56 -193.48 -1.85 -14.51 16 7 C 0.47 13.08 7.47 132.97 0.99 14.07 16 8 N -0.71 -21.59 5.70 -345.18 -1.97 -23.56 16 9 C 0.14 4.43 5.69 86.38 0.49 4.92 16 10 C -0.11 -4.19 5.27 30.59 0.16 -4.03 16 11 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 12 C -0.54 -31.28 9.66 25.60 0.25 -31.04 16 13 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 14 C 0.00 0.07 5.47 84.65 0.46 0.53 16 15 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 16 Si 0.96 43.76 27.47 68.60 1.88 45.64 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 20 C -0.22 -6.18 6.22 36.70 0.23 -5.95 16 21 N 0.04 1.27 3.29 -45.71 -0.15 1.12 16 22 O -0.16 -5.46 19.25 18.89 0.36 -5.10 16 23 O -0.16 -5.46 19.25 18.89 0.36 -5.10 16 24 H 0.09 0.18 7.72 -2.39 -0.02 0.16 16 25 H 0.09 0.18 7.70 -2.39 -0.02 0.16 16 26 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.20 0.33 6.46 -2.91 -0.02 0.31 16 28 H 0.22 0.64 8.06 -2.91 -0.02 0.61 16 29 H 0.41 12.75 7.70 -92.71 -0.71 12.03 16 30 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 33 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 35 H 0.03 1.18 7.57 -2.39 -0.02 1.16 16 36 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -77.61 319.62 3.48 -74.13 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.35 Total: 9.29 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 5.12 Total: -14.50 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -3.67 Total: -97.18 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.21 Total: -17.39 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Total: -77.61 3.48 -74.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.110 kcal (2) G-P(sol) polarization free energy of solvation -77.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds