Wall clock time and date at job start Tue Mar 31 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40483 * 119.25351 * 80.55315 * 3 2 1 5 5 C 1.36353 * 119.79447 * 179.97438 * 4 3 2 6 6 C 1.40914 * 118.28230 * 0.02562 * 5 4 3 7 7 C 1.40218 * 121.15026 * 179.97438 * 6 5 4 8 8 C 1.37854 * 119.50451 * 179.97438 * 7 6 5 9 9 N 1.39485 * 119.70603 * 179.97438 * 8 7 6 10 10 C 1.46498 * 119.99739 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46862 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46830 * 180.02562 * 11 10 9 13 13 C 1.50708 * 109.46867 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99841 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99553 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00341 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99517 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46990 * 60.00089 * 17 15 13 19 19 H 1.48502 * 109.46866 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47034 * 299.99711 * 17 15 13 21 21 C 1.40115 * 120.58736 * 0.02562 * 8 7 6 22 22 C 1.35817 * 120.98592 * 0.02562 * 21 8 7 23 23 C 1.40865 * 119.99111 * 359.97438 * 22 21 8 24 24 N 1.32009 * 119.24901 * 260.28218 * 3 2 1 25 25 H 1.07995 * 120.10611 * 0.02562 * 4 3 2 26 26 H 1.08001 * 120.85852 * 179.97438 * 5 4 3 27 27 H 1.08001 * 120.24842 * 0.02562 * 7 6 5 28 28 H 0.96998 * 120.00414 * 0.02562 * 9 8 7 29 29 H 1.08999 * 109.47750 * 300.00229 * 10 9 8 30 30 H 1.09005 * 109.47305 * 60.00880 * 10 9 8 31 31 H 1.08997 * 109.47386 * 299.99912 * 11 10 9 32 32 H 1.08994 * 109.47391 * 60.00457 * 11 10 9 33 33 H 1.08999 * 109.47475 * 299.99711 * 12 11 10 34 34 H 1.08997 * 109.47759 * 60.00103 * 12 11 10 35 35 H 0.97002 * 120.00198 * 179.97438 * 16 15 13 36 36 H 1.08000 * 119.50846 * 179.97438 * 21 8 7 37 37 H 1.08003 * 120.00158 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2546 -0.2002 -1.2090 5 6 4.6180 -0.2012 -1.2218 6 6 5.2973 0.0017 -0.0040 7 6 6.6983 0.0117 0.0522 8 6 7.3279 0.2137 1.2618 9 7 8.7214 0.2239 1.3226 10 6 9.3970 0.4387 2.6046 11 6 10.9122 0.4041 2.3946 12 6 11.6178 0.6278 3.7336 13 6 13.1103 0.5932 3.5268 14 1 13.5149 0.4286 2.5392 15 6 13.9590 0.7727 4.5985 16 7 13.4662 0.9746 5.8010 17 14 15.8088 0.7304 4.3421 18 1 16.2012 1.8008 3.3905 19 1 16.4937 0.9474 5.6418 20 1 16.2021 -0.5910 3.7905 21 6 6.5804 0.4079 2.4309 22 6 5.2226 0.4014 2.4019 23 6 4.5453 0.1979 1.1836 24 7 3.2129 0.1953 1.1353 25 1 2.7042 -0.3526 -2.1257 26 1 5.1633 -0.3544 -2.1414 27 1 7.2799 -0.1370 -0.8457 28 1 9.2431 0.0896 0.5159 29 1 9.1087 1.4088 3.0093 30 1 9.1088 -0.3468 3.3033 31 1 11.2009 -0.5658 1.9897 32 1 11.2002 1.1897 1.6961 33 1 11.3293 1.5976 4.1389 34 1 11.3299 -0.1580 4.4319 35 1 14.0633 1.1005 6.5550 36 1 7.0917 0.5643 3.3693 37 1 4.6622 0.5523 3.3127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:16 Heat of formation + Delta-G solvation = 71.850973 kcal Electronic energy + Delta-G solvation = -19318.746639 eV Core-core repulsion = 16253.389608 eV Total energy + Delta-G solvation = -3065.357030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07492 -38.55231 -36.78178 -35.47075 -33.85530 -33.50019 -31.65944 -30.65607 -29.24559 -26.57110 -24.97005 -24.07304 -22.71800 -22.27946 -20.52172 -19.80534 -17.99521 -17.54013 -16.64256 -16.07418 -15.58908 -15.19312 -14.90331 -14.66709 -14.47275 -14.41851 -13.77433 -13.58008 -13.48926 -13.27590 -12.96453 -12.66208 -12.47424 -12.42601 -11.87027 -11.61471 -11.60579 -10.96380 -10.85384 -10.83830 -10.67821 -10.07734 -9.91934 -9.69222 -9.59581 -9.25553 -8.82094 -8.46464 -7.39207 -6.11412 -4.14818 0.05329 0.46730 1.78773 2.27631 2.30184 3.17013 3.25818 3.28315 3.31125 3.32242 3.37721 3.95973 4.26181 4.36498 4.40913 4.61522 4.67596 4.80516 5.00568 5.19143 5.24708 5.36518 5.41283 5.52211 5.54428 5.73110 5.84684 5.90857 5.93991 6.07862 6.24522 6.38638 6.40551 6.54251 6.82732 7.12909 7.16546 7.50184 7.50427 7.61016 7.61799 7.86115 8.27268 8.91247 9.50072 10.99713 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.059384 B = 0.002296 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.396176 B =12192.836087 C =12638.482986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.275 3.725 3 C 0.178 3.822 4 C -0.121 4.121 5 C -0.077 4.077 6 C -0.019 4.019 7 C -0.226 4.226 8 C 0.251 3.749 9 N -0.728 5.728 10 C 0.112 3.888 11 C -0.121 4.121 12 C 0.025 3.975 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.151 4.151 22 C -0.038 4.038 23 C 0.076 3.924 24 N -0.414 5.414 25 H 0.141 0.859 26 H 0.145 0.855 27 H 0.131 0.869 28 H 0.403 0.597 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.139 0.861 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.606 -2.170 -12.903 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.042 4.042 3 C 0.024 3.976 4 C -0.143 4.143 5 C -0.103 4.103 6 C -0.023 4.023 7 C -0.251 4.251 8 C 0.141 3.859 9 N -0.352 5.352 10 C -0.011 4.011 11 C -0.159 4.159 12 C -0.013 4.013 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.173 4.173 22 C -0.057 4.057 23 C -0.050 4.050 24 N -0.124 5.124 25 H 0.159 0.841 26 H 0.163 0.837 27 H 0.148 0.852 28 H 0.238 0.762 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.157 0.843 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.527 -1.950 -11.631 21.125 hybrid contribution 2.213 -0.176 -1.059 2.460 sum -15.313 -2.126 -12.690 20.001 Atomic orbital electron populations 1.81233 1.11662 1.08124 1.07116 1.25105 0.91770 0.93828 0.93538 1.16235 0.85747 1.05041 0.90537 1.21490 0.95046 1.00116 0.97663 1.21290 0.93565 0.97810 0.97638 1.18572 0.94079 0.96161 0.93464 1.20355 0.92521 1.15308 0.96951 1.18045 0.84502 0.89926 0.93427 1.45260 1.02257 1.75992 1.11645 1.21801 0.94533 1.00733 0.84050 1.21867 0.90576 1.01139 1.02323 1.19025 0.94762 0.97369 0.90134 1.21146 0.91314 1.49726 0.94175 0.92697 1.25022 0.99005 0.95137 0.95227 1.69937 1.35193 1.48866 0.99236 0.86633 0.85246 0.78605 0.77379 1.20210 1.21212 1.20217 1.20763 0.93757 1.04662 0.98149 1.20673 0.93320 0.95349 0.96388 1.18543 0.87657 1.05141 0.93706 1.67604 1.09579 1.08197 1.27039 0.84120 0.83704 0.85161 0.76172 0.91916 0.91906 0.92609 0.92609 0.96290 0.96291 0.92790 0.84280 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.13 18.54 41.83 0.78 -4.36 16 2 C 0.27 3.04 15.50 -22.47 -0.35 2.69 16 3 C 0.18 1.82 6.58 -85.02 -0.56 1.26 16 4 C -0.12 -0.92 9.69 -39.42 -0.38 -1.30 16 5 C -0.08 -0.58 9.87 -39.25 -0.39 -0.97 16 6 C -0.02 -0.19 5.75 -106.73 -0.61 -0.81 16 7 C -0.23 -2.18 9.63 -38.98 -0.38 -2.55 16 8 C 0.25 2.73 6.64 -83.81 -0.56 2.17 16 9 N -0.73 -8.26 5.72 -58.63 -0.34 -8.59 16 10 C 0.11 1.54 4.89 -4.04 -0.02 1.52 16 11 C -0.12 -2.10 5.27 -26.73 -0.14 -2.24 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.53 -13.97 9.11 -34.44 -0.31 -14.29 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 17 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C -0.15 -1.60 9.20 -39.75 -0.37 -1.97 16 22 C -0.04 -0.39 9.96 -39.46 -0.39 -0.79 16 23 C 0.08 0.86 6.61 -84.81 -0.56 0.30 16 24 N -0.41 -4.91 10.22 -8.86 -0.09 -5.00 16 25 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 26 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 27 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.40 4.02 8.47 -40.82 -0.35 3.68 16 29 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 30 H 0.06 0.87 7.92 -51.93 -0.41 0.46 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.14 1.39 6.66 -52.49 -0.35 1.04 16 37 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -30.11 329.58 -8.66 -38.77 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -4.44 Total: -1.53 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -5.25 Total: -15.05 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 1.09 Total: -42.90 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.11 -8.66 -38.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.619 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds