Wall clock time and date at job start Tue Mar 31 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38289 * 119.92571 * 2 1 4 4 C 1.38103 * 120.07437 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.03886 * 180.02562 * 4 3 2 6 6 C 1.38918 * 119.92324 * 0.02562 * 4 3 2 7 7 N 1.39740 * 120.07374 * 180.02562 * 6 4 3 8 8 C 1.38297 * 120.00310 * 55.48076 * 7 6 4 9 9 C 1.38999 * 119.99831 * 185.87643 * 8 7 6 10 10 H 1.08010 * 119.99352 * 140.76362 * 9 8 7 11 11 C 1.40821 * 120.00495 * 320.76407 * 9 8 7 12 12 N 1.30340 * 120.00264 * 167.48268 * 11 9 8 13 13 Si 1.86807 * 119.99904 * 347.48323 * 11 9 8 14 14 H 1.48504 * 109.47009 * 85.32103 * 13 11 9 15 15 H 1.48504 * 109.47197 * 205.31904 * 13 11 9 16 16 H 1.48496 * 109.47062 * 325.32463 * 13 11 9 17 17 C 1.41156 * 119.99774 * 5.87928 * 8 7 6 18 18 C 1.43199 * 120.00167 * 188.25548 * 17 8 7 19 19 N 7.11920 * 139.21058 * 53.14886 * 2 1 3 20 20 C 1.43203 * 120.00386 * 8.25813 * 17 8 7 21 21 N 2.99085 * 123.36916 * 71.04134 * 2 1 3 22 22 C 1.38921 * 119.85412 * 0.27730 * 6 4 3 23 23 C 1.50696 * 120.04148 * 179.72500 * 22 6 4 24 24 C 1.38101 * 119.91952 * 359.39936 * 22 6 4 25 25 H 1.08998 * 109.47165 * 90.00183 * 1 2 3 26 26 H 1.09003 * 109.47663 * 210.00576 * 1 2 3 27 27 H 1.09000 * 109.47226 * 330.00663 * 1 2 3 28 28 H 1.08003 * 119.96537 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47073 * 275.51181 * 5 4 3 30 30 H 1.09005 * 109.46851 * 35.50661 * 5 4 3 31 31 H 1.09002 * 109.47566 * 155.50835 * 5 4 3 32 32 H 0.96998 * 119.99817 * 235.75572 * 7 6 4 33 33 H 0.97001 * 120.00232 * 179.97438 * 12 11 9 34 34 H 1.09002 * 109.47049 * 94.06667 * 23 22 6 35 35 H 1.09001 * 109.47500 * 214.06538 * 23 22 6 36 36 H 1.08999 * 109.47353 * 334.07167 * 23 22 6 37 37 H 1.07999 * 119.96482 * 180.33563 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2021 0.0005 5 6 4.3288 2.5086 0.0011 6 6 4.2739 -0.0001 0.0005 7 7 5.6713 -0.0001 0.0016 8 6 6.3621 0.6781 0.9892 9 6 7.7467 0.7813 0.9230 10 1 8.2336 1.7029 1.2063 11 6 8.5146 -0.3155 0.4867 12 7 9.7735 -0.1531 0.1907 13 14 7.7289 -2.0032 0.3320 14 1 7.0739 -2.1245 -0.9952 15 1 8.7739 -3.0498 0.4658 16 1 6.7144 -2.1768 1.4024 17 6 5.6611 1.2654 2.0645 18 6 6.3495 2.1146 2.9894 19 7 6.8970 2.7893 3.7216 20 6 4.2615 1.0119 2.2305 21 7 3.1520 0.8115 2.3623 22 6 3.5778 -1.2023 -0.0058 23 6 4.3287 -2.5088 -0.0121 24 6 2.1968 -1.1986 0.0004 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6550 2.1328 -0.0004 29 1 4.4247 2.8730 -1.0217 30 1 3.7843 3.2404 0.5980 31 1 5.3206 2.3576 0.4275 32 1 6.1568 -0.4726 -0.6926 33 1 10.3026 -0.9087 -0.1096 34 1 4.4461 -2.8653 1.0112 35 1 3.7719 -3.2452 -0.5917 36 1 5.3112 -2.3611 -0.4603 37 1 1.6549 -2.1328 0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:38 Heat of formation + Delta-G solvation = 106.450860 kcal Electronic energy + Delta-G solvation = -22123.713660 eV Core-core repulsion = 19059.856993 eV Total energy + Delta-G solvation = -3063.856667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.42056 -37.22028 -35.32183 -34.82107 -34.00028 -32.97620 -32.10765 -30.00201 -27.74917 -27.39420 -26.11960 -25.14600 -21.56348 -20.53766 -20.02161 -19.22689 -17.37515 -17.23589 -16.01990 -15.30800 -15.05825 -14.29338 -14.13250 -13.65893 -13.45616 -13.37484 -12.97738 -12.93136 -12.66244 -12.53098 -12.37050 -12.23166 -11.95004 -11.73528 -11.54736 -11.52336 -11.31810 -11.22231 -11.12158 -10.94523 -10.84267 -10.54668 -10.46515 -10.30166 -9.91172 -9.57389 -8.09209 -7.68332 -7.51204 -6.79388 -5.30751 1.68762 1.83507 2.31622 2.60835 2.74816 2.89123 3.40494 3.79443 3.93382 4.03784 4.21962 4.34709 4.43918 5.09434 5.13967 5.17834 5.25559 5.50665 5.56129 5.59767 5.75534 5.79144 5.83843 5.90678 6.00272 6.06685 6.15208 6.18864 6.22577 6.34901 6.50420 6.56517 6.77835 6.84113 6.91848 7.00573 7.09691 7.33941 7.45014 7.75317 7.79209 8.26104 8.28882 8.99892 9.17692 9.46510 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017461 B = 0.008421 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.206283 B = 3324.106708 C = 4334.300773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.078 4.078 3 C -0.096 4.096 4 C -0.058 4.058 5 C -0.137 4.137 6 C 0.132 3.868 7 N -0.678 5.678 8 C 0.399 3.601 9 C -0.439 4.439 10 H 0.123 0.877 11 C 0.087 3.913 12 N -0.760 5.760 13 Si 0.889 3.111 14 H -0.258 1.258 15 H -0.272 1.272 16 H -0.234 1.234 17 C -0.306 4.306 18 C 0.328 3.672 19 N -0.527 5.527 20 C 0.299 3.701 21 N -0.504 5.504 22 C -0.095 4.095 23 C -0.119 4.119 24 C -0.116 4.116 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.113 0.887 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.400 0.600 33 H 0.298 0.702 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 -5.403 -7.314 12.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.079 4.079 3 C -0.115 4.115 4 C -0.061 4.061 5 C -0.193 4.193 6 C 0.038 3.962 7 N -0.305 5.305 8 C 0.287 3.713 9 C -0.471 4.471 10 H 0.141 0.859 11 C -0.140 4.140 12 N -0.381 5.381 13 Si 0.713 3.287 14 H -0.185 1.185 15 H -0.198 1.198 16 H -0.156 1.156 17 C -0.325 4.325 18 C 0.019 3.981 19 N -0.209 5.209 20 C -0.008 4.008 21 N -0.185 5.185 22 C -0.098 4.098 23 C -0.176 4.176 24 C -0.134 4.134 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.131 0.869 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.241 0.759 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.935 -4.690 -5.990 11.735 hybrid contribution 0.355 -1.221 -0.700 1.452 sum -8.581 -5.912 -6.690 12.383 Atomic orbital electron populations 1.20685 0.91962 1.02321 1.01289 1.19602 0.95268 0.93020 1.00025 1.20454 0.92699 0.97058 1.01294 1.19898 0.93696 0.94808 0.97653 1.21393 1.03580 0.93000 1.01374 1.17240 0.83201 0.92295 1.03477 1.42694 1.02993 1.57316 1.27544 1.17194 0.90417 0.80599 0.83044 1.19331 0.88390 1.02278 1.37101 0.85917 1.26291 0.95096 1.01799 0.90840 1.69378 1.07896 1.35148 1.25667 0.86869 0.80391 0.80314 0.81101 1.18469 1.19813 1.15633 1.12406 0.85779 1.28988 1.05318 1.24520 0.91780 0.90725 0.91053 1.81063 1.09574 1.16819 1.13403 1.24675 0.91692 0.91977 0.92491 1.81115 1.11962 1.14410 1.11045 1.19748 0.93856 0.93940 1.02236 1.20964 0.99827 0.94426 1.02357 1.20472 0.92621 0.97109 1.03232 0.91970 0.92117 0.91939 0.86893 0.92247 0.92281 0.87356 0.75923 0.89017 0.91108 0.91756 0.92115 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 36.00 0.36 -0.93 16 2 C -0.08 -1.23 5.45 -104.59 -0.57 -1.80 16 3 C -0.10 -1.62 7.66 -39.61 -0.30 -1.92 16 4 C -0.06 -1.05 3.13 -104.42 -0.33 -1.38 16 5 C -0.14 -2.40 8.37 36.00 0.30 -2.10 16 6 C 0.13 2.44 4.06 -83.75 -0.34 2.10 16 7 N -0.68 -12.69 3.24 -8.18 -0.03 -12.72 16 8 C 0.40 8.26 3.88 -83.56 -0.32 7.93 16 9 C -0.44 -9.63 8.84 -38.32 -0.34 -9.97 16 10 H 0.12 2.96 7.63 -52.48 -0.40 2.56 16 11 C 0.09 1.81 5.46 -17.21 -0.09 1.72 16 12 N -0.76 -16.46 13.90 55.59 0.77 -15.69 16 13 Si 0.89 15.80 22.73 -169.99 -3.86 11.94 16 14 H -0.26 -4.10 5.70 56.52 0.32 -3.78 16 15 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 16 H -0.23 -4.35 6.86 56.52 0.39 -3.96 16 17 C -0.31 -6.66 3.81 -104.94 -0.40 -7.06 16 18 C 0.33 7.63 14.14 -22.47 -0.32 7.32 16 19 N -0.53 -12.86 18.54 41.84 0.78 -12.08 16 20 C 0.30 6.51 9.80 -22.50 -0.22 6.29 16 21 N -0.50 -10.99 14.56 41.80 0.61 -10.38 16 22 C -0.10 -1.63 5.74 -104.42 -0.60 -2.23 16 23 C -0.12 -1.81 9.16 36.00 0.33 -1.48 16 24 C -0.12 -1.83 9.35 -39.61 -0.37 -2.20 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 28 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 31 H 0.11 2.09 3.63 -51.93 -0.19 1.90 16 32 H 0.40 7.01 4.96 -40.82 -0.20 6.81 16 33 H 0.30 5.75 8.29 -40.82 -0.34 5.41 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 36 H 0.06 0.93 3.32 -51.93 -0.17 0.76 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 302.26 15.07 4.56 4.56 Total: -1.00 -25.00 302.26 -4.38 -29.38 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -3.99 Total: 10.72 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -3.21 Total: -5.73 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 2.13 Total: -50.87 kcal Atomic # 14 Polarization: 15.80 SS G_CDS: -3.86 Total: 11.94 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -25.00 -4.38 -29.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.834 kcal (2) G-P(sol) polarization free energy of solvation -25.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds