Wall clock time and date at job start Tue Mar 31 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31079 * 1 3 3 Si 1.86795 * 120.00093 * 2 1 4 4 H 1.48501 * 109.47225 * 240.00027 * 3 2 1 5 5 H 1.48509 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47087 * 119.99838 * 3 2 1 7 7 C 1.39694 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.40914 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.38959 * 126.93026 * 20.76621 * 9 7 2 11 11 N 1.35650 * 109.24825 * 179.48066 * 10 9 7 12 12 H 0.96989 * 124.69684 * 179.97438 * 11 10 9 13 13 C 1.38145 * 110.60214 * 0.65286 * 11 10 9 14 14 C 1.39179 * 132.75599 * 179.22628 * 13 11 10 15 15 C 1.37930 * 120.11514 * 180.02562 * 14 13 11 16 16 C 1.38520 * 120.69557 * 359.97438 * 15 14 13 17 17 C 1.38562 * 120.17126 * 0.04838 * 16 15 14 18 18 N 1.39985 * 120.21848 * 179.97438 * 17 16 15 19 19 C 1.36584 * 125.67487 * 56.56455 * 18 17 16 20 20 C 1.34857 * 108.20125 * 179.74609 * 19 18 17 21 21 C 1.40948 * 107.46689 * 0.23024 * 20 19 18 22 22 C 1.50707 * 126.25951 * 180.02562 * 21 20 19 23 23 N 1.46891 * 109.46967 * 89.97462 * 22 21 20 24 24 C 1.34843 * 107.47377 * 359.97438 * 21 20 19 25 25 C 1.39733 * 119.55874 * 0.24582 * 17 16 15 26 26 H 0.96999 * 120.00010 * 0.02562 * 1 2 3 27 27 H 1.07998 * 125.37194 * 0.07624 * 10 9 7 28 28 H 1.08006 * 119.94353 * 0.05841 * 14 13 11 29 29 H 1.08000 * 119.64631 * 179.97438 * 15 14 13 30 30 H 1.08003 * 119.91152 * 180.02562 * 16 15 14 31 31 H 1.08002 * 125.89935 * 0.02562 * 19 18 17 32 32 H 1.07998 * 126.26221 * 180.18555 * 20 19 18 33 33 H 1.09003 * 109.46571 * 209.97551 * 22 21 20 34 34 H 1.08998 * 109.46845 * 329.97035 * 22 21 20 35 35 H 1.00901 * 110.99855 * 179.97438 * 23 22 21 36 36 H 1.00900 * 111.00266 * 303.95176 * 23 22 21 37 37 H 1.08000 * 125.89957 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 3.0985 1.6964 -1.2125 5 1 1.2797 2.7465 -0.0006 6 1 3.0985 1.6963 1.2125 7 6 2.0092 -1.2098 0.0005 8 1 3.0892 -1.2099 0.0001 9 6 1.3047 -2.4302 0.0005 10 6 -0.0121 -2.6341 -0.3938 11 7 -0.3211 -3.9479 -0.2584 12 1 -1.1839 -4.3369 -0.4704 13 6 0.7586 -4.6526 0.2376 14 6 0.9438 -5.9937 0.5608 15 6 2.1590 -6.4264 1.0493 16 6 3.2076 -5.5383 1.2242 17 6 3.0454 -4.1987 0.9094 18 7 4.1042 -3.3002 1.0863 19 6 5.3459 -3.4127 0.5286 20 6 6.0838 -2.3565 0.9268 21 6 5.2723 -1.5652 1.7646 22 6 5.6762 -0.2815 2.4429 23 7 5.3723 0.8542 1.5622 24 6 4.0681 -2.1664 1.8471 25 6 1.8162 -3.7495 0.4198 26 1 -0.4850 0.8400 -0.0004 27 1 -0.6806 -1.8690 -0.7601 28 1 0.1348 -6.6968 0.4283 29 1 2.2942 -7.4686 1.2980 30 1 4.1538 -5.8909 1.6072 31 1 5.6779 -4.2076 -0.1229 32 1 7.1092 -2.1545 0.6543 33 1 5.1243 -0.1749 3.3768 34 1 6.7455 -0.3025 2.6531 35 1 5.6338 1.7274 1.9949 36 1 5.8212 0.7463 0.6650 37 1 3.2205 -1.8112 2.4145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169725493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:57 Heat of formation + Delta-G solvation = 109.441126 kcal Electronic energy + Delta-G solvation = -21773.018752 eV Core-core repulsion = 18709.291752 eV Total energy + Delta-G solvation = -3063.726999 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86584 -39.51372 -36.02978 -34.37119 -33.40322 -31.81895 -29.60683 -28.38256 -28.04434 -27.43320 -24.73288 -23.96320 -21.96843 -20.83641 -19.85186 -19.36048 -18.66763 -17.71636 -16.09688 -15.68938 -15.36445 -14.95196 -14.58764 -14.26614 -14.03699 -13.70538 -13.33901 -12.94257 -12.76010 -12.56770 -12.40476 -12.36058 -11.59537 -11.39494 -11.21181 -10.99461 -10.91853 -10.75049 -10.62920 -10.53063 -9.80867 -9.72900 -9.17924 -8.65093 -8.08345 -7.74181 -7.29187 -7.23488 -6.54739 -6.40624 -3.94641 1.79233 2.39473 3.14117 3.37841 3.38244 3.59509 3.61117 3.79246 4.19929 4.34162 4.44059 4.60976 5.30128 5.53078 5.56815 5.66515 5.69206 5.77225 5.81980 5.91511 6.03721 6.17296 6.28873 6.30642 6.44801 6.60354 6.79044 6.92613 7.03014 7.09063 7.17851 7.33180 7.48367 7.60265 7.70646 7.71975 7.85546 7.93153 8.03912 8.28911 8.38980 8.66077 8.99653 9.14286 9.23010 10.59258 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.009329 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.023534 B = 3000.760138 C = 4835.500476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.063 3.937 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.300 1.300 6 H -0.218 1.218 7 C -0.419 4.419 8 H 0.086 0.914 9 C 0.032 3.968 10 C -0.086 4.086 11 N -0.584 5.584 12 H 0.396 0.604 13 C 0.091 3.909 14 C -0.144 4.144 15 C -0.108 4.108 16 C -0.183 4.183 17 C 0.168 3.832 18 N -0.385 5.385 19 C -0.020 4.020 20 C -0.197 4.197 21 C -0.196 4.196 22 C 0.147 3.853 23 N -0.839 5.839 24 C 0.071 3.929 25 C -0.129 4.129 26 H 0.271 0.729 27 H 0.178 0.822 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.151 0.849 32 H 0.124 0.876 33 H 0.067 0.933 34 H 0.020 0.980 35 H 0.330 0.670 36 H 0.338 0.662 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 -4.356 2.398 7.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.140 1.140 7 C -0.451 4.451 8 H 0.104 0.896 9 C 0.027 3.973 10 C -0.210 4.210 11 N -0.184 5.184 12 H 0.230 0.770 13 C -0.021 4.021 14 C -0.166 4.166 15 C -0.128 4.128 16 C -0.205 4.205 17 C 0.078 3.922 18 N -0.055 5.055 19 C -0.148 4.148 20 C -0.222 4.222 21 C -0.202 4.202 22 C 0.016 3.984 23 N -0.368 5.368 24 C -0.060 4.060 25 C -0.137 4.137 26 H 0.081 0.919 27 H 0.195 0.805 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.168 0.832 32 H 0.142 0.858 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.142 0.858 36 H 0.151 0.849 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.488 -4.555 2.379 6.823 hybrid contribution 0.775 0.723 -0.299 1.102 sum 5.263 -3.832 2.080 6.834 Atomic orbital electron populations 1.69700 1.07439 1.28151 1.41621 1.25682 0.94718 1.01088 0.93259 0.86445 0.79462 0.79204 0.82293 1.20344 1.22706 1.14007 1.18889 0.94664 0.88408 1.43107 0.89638 1.18072 0.91613 0.89498 0.98138 1.22763 1.00396 0.82226 1.15580 1.41491 1.11123 1.08454 1.57317 0.77016 1.17982 0.88832 0.92386 1.02943 1.19900 0.98016 0.92359 1.06343 1.20234 0.92413 0.98193 1.01962 1.20453 0.99751 0.91785 1.08509 1.17103 0.86108 0.88332 1.00634 1.41293 1.08895 1.18994 1.36351 1.21647 0.85118 1.02730 1.05273 1.20552 0.99350 0.97237 1.05091 1.19086 0.94950 0.98725 1.07434 1.19847 0.96320 0.87454 0.94754 1.58844 1.67528 1.03669 1.06786 1.21615 0.98263 0.87492 0.98592 1.19360 0.92176 0.96596 1.05607 0.91922 0.80517 0.87568 0.86720 0.87014 0.83180 0.85805 0.91500 0.96215 0.85825 0.84920 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.26 10.76 55.54 0.60 -21.66 16 2 C 0.06 1.66 5.47 -17.33 -0.09 1.56 16 3 Si 0.90 20.22 29.40 -169.99 -5.00 15.22 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.30 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.22 -4.64 5.86 56.52 0.33 -4.31 16 7 C -0.42 -11.24 7.84 -38.03 -0.30 -11.54 16 8 H 0.09 2.33 5.68 -52.49 -0.30 2.03 16 9 C 0.03 0.84 5.98 -104.81 -0.63 0.22 16 10 C -0.09 -2.13 10.78 -15.60 -0.17 -2.30 16 11 N -0.58 -12.29 5.99 -9.80 -0.06 -12.35 16 12 H 0.40 6.74 8.96 -40.82 -0.37 6.37 16 13 C 0.09 1.97 7.23 -83.91 -0.61 1.37 16 14 C -0.14 -2.61 10.07 -39.35 -0.40 -3.01 16 15 C -0.11 -1.84 10.01 -39.59 -0.40 -2.23 16 16 C -0.18 -3.42 9.77 -39.36 -0.38 -3.80 16 17 C 0.17 3.66 5.88 -83.46 -0.49 3.17 16 18 N -0.39 -8.06 2.56 -60.80 -0.16 -8.22 16 19 C -0.02 -0.37 11.22 -16.63 -0.19 -0.56 16 20 C -0.20 -3.49 10.81 -39.76 -0.43 -3.92 16 21 C -0.20 -3.66 5.65 -104.80 -0.59 -4.25 16 22 C 0.15 2.33 7.28 -4.98 -0.04 2.29 16 23 N -0.84 -13.33 8.23 -11.41 -0.09 -13.43 16 24 C 0.07 1.50 7.88 -16.64 -0.13 1.37 16 25 C -0.13 -3.10 6.13 -104.77 -0.64 -3.74 16 26 H 0.27 6.79 8.30 -40.82 -0.34 6.45 16 27 H 0.18 4.55 6.31 -52.49 -0.33 4.22 16 28 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 31 H 0.15 2.45 8.06 -52.49 -0.42 2.03 16 32 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.33 4.33 9.08 -39.29 -0.36 3.98 16 36 H 0.34 5.25 8.99 -39.29 -0.35 4.90 16 37 H 0.16 3.55 7.92 -52.49 -0.42 3.13 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -29.27 310.81 -9.79 -39.06 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -4.29 Total: 22.06 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -5.48 Total: -25.37 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.29 Total: -55.66 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.00 Total: 15.22 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.27 -9.79 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169725493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.503 kcal (2) G-P(sol) polarization free energy of solvation -29.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds