Wall clock time and date at job start Tue Mar 31 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31079 * 1 3 3 Si 1.86795 * 120.00093 * 2 1 4 4 H 1.48501 * 109.47225 * 240.00027 * 3 2 1 5 5 H 1.48509 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47087 * 119.99838 * 3 2 1 7 7 C 1.39694 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.40914 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.38959 * 126.93026 * 20.76621 * 9 7 2 11 11 N 1.35650 * 109.24825 * 179.48066 * 10 9 7 12 12 H 0.96989 * 124.69684 * 179.97438 * 11 10 9 13 13 C 1.38145 * 110.60214 * 0.65286 * 11 10 9 14 14 C 1.39179 * 132.75599 * 179.22628 * 13 11 10 15 15 C 1.37930 * 120.11514 * 180.02562 * 14 13 11 16 16 C 1.38520 * 120.69557 * 359.97438 * 15 14 13 17 17 C 1.38562 * 120.17126 * 0.04838 * 16 15 14 18 18 N 1.39985 * 120.21848 * 179.97438 * 17 16 15 19 19 C 1.36584 * 125.67487 * 56.56455 * 18 17 16 20 20 C 1.34857 * 108.20125 * 179.74609 * 19 18 17 21 21 C 1.40948 * 107.46689 * 0.23024 * 20 19 18 22 22 C 1.50707 * 126.25951 * 180.02562 * 21 20 19 23 23 N 1.46891 * 109.46967 * 89.97462 * 22 21 20 24 24 C 1.34843 * 107.47377 * 359.97438 * 21 20 19 25 25 C 1.39733 * 119.55874 * 0.24582 * 17 16 15 26 26 H 0.96999 * 120.00010 * 0.02562 * 1 2 3 27 27 H 1.07998 * 125.37194 * 0.07624 * 10 9 7 28 28 H 1.08006 * 119.94353 * 0.05841 * 14 13 11 29 29 H 1.08000 * 119.64631 * 179.97438 * 15 14 13 30 30 H 1.08003 * 119.91152 * 180.02562 * 16 15 14 31 31 H 1.08002 * 125.89935 * 0.02562 * 19 18 17 32 32 H 1.07998 * 126.26221 * 180.18555 * 20 19 18 33 33 H 1.09003 * 109.46571 * 209.97551 * 22 21 20 34 34 H 1.08998 * 109.46845 * 329.97035 * 22 21 20 35 35 H 1.00901 * 110.99855 * 179.97438 * 23 22 21 36 36 H 1.00900 * 111.00266 * 303.95176 * 23 22 21 37 37 H 1.08000 * 125.89957 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 3.0985 1.6964 -1.2125 5 1 1.2797 2.7465 -0.0006 6 1 3.0985 1.6963 1.2125 7 6 2.0092 -1.2098 0.0005 8 1 3.0892 -1.2099 0.0001 9 6 1.3047 -2.4302 0.0005 10 6 -0.0121 -2.6341 -0.3938 11 7 -0.3211 -3.9479 -0.2584 12 1 -1.1839 -4.3369 -0.4704 13 6 0.7586 -4.6526 0.2376 14 6 0.9438 -5.9937 0.5608 15 6 2.1590 -6.4264 1.0493 16 6 3.2076 -5.5383 1.2242 17 6 3.0454 -4.1987 0.9094 18 7 4.1042 -3.3002 1.0863 19 6 5.3459 -3.4127 0.5286 20 6 6.0838 -2.3565 0.9268 21 6 5.2723 -1.5652 1.7646 22 6 5.6762 -0.2815 2.4429 23 7 5.3723 0.8542 1.5622 24 6 4.0681 -2.1664 1.8471 25 6 1.8162 -3.7495 0.4198 26 1 -0.4850 0.8400 -0.0004 27 1 -0.6806 -1.8690 -0.7601 28 1 0.1348 -6.6968 0.4283 29 1 2.2942 -7.4686 1.2980 30 1 4.1538 -5.8909 1.6072 31 1 5.6779 -4.2076 -0.1229 32 1 7.1092 -2.1545 0.6543 33 1 5.1243 -0.1749 3.3768 34 1 6.7455 -0.3025 2.6531 35 1 5.6338 1.7274 1.9949 36 1 5.8212 0.7463 0.6650 37 1 3.2205 -1.8112 2.4145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169725493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:57 Heat of formation + Delta-G solvation = 92.201786 kcal Electronic energy + Delta-G solvation = -21773.766305 eV Core-core repulsion = 18709.291752 eV Total energy + Delta-G solvation = -3064.474553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.37696 -41.13251 -37.59297 -35.75492 -35.22558 -33.32229 -31.32260 -29.92139 -29.53194 -29.06618 -26.57556 -25.36220 -23.48933 -22.41988 -21.52012 -21.03236 -20.11588 -19.28833 -17.85426 -17.38426 -16.88957 -16.40280 -16.07554 -15.95836 -15.46443 -15.16394 -14.93769 -14.51063 -14.28700 -14.08234 -13.97064 -13.81656 -13.16093 -13.08311 -12.91076 -12.69285 -12.53666 -12.25998 -12.17953 -12.04927 -11.65346 -11.54574 -11.02640 -10.27672 -9.44322 -9.18617 -8.86352 -8.77746 -8.33739 -8.30041 -5.91307 0.22553 0.85881 1.51238 1.55469 1.64429 1.78656 2.17668 2.31281 2.35119 2.50713 2.80617 3.00150 3.60620 4.10914 4.18042 4.26356 4.28047 4.37768 4.46039 4.54407 4.60444 4.70795 4.80954 4.93278 4.96973 5.13797 5.27310 5.34244 5.39683 5.53076 5.63578 5.70257 5.82437 5.87505 6.14354 6.28006 6.41802 6.47137 6.56931 6.77295 6.82385 6.89508 7.19691 7.24728 7.34306 8.66522 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.009329 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.023534 B = 3000.760138 C = 4835.500476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.020 3.980 3 Si 0.959 3.041 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.202 1.202 7 C -0.434 4.434 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.095 4.095 11 N -0.579 5.579 12 H 0.414 0.586 13 C 0.084 3.916 14 C -0.140 4.140 15 C -0.092 4.092 16 C -0.172 4.172 17 C 0.142 3.858 18 N -0.394 5.394 19 C -0.029 4.029 20 C -0.196 4.196 21 C -0.189 4.189 22 C 0.149 3.851 23 N -0.855 5.855 24 C 0.037 3.963 25 C -0.168 4.168 26 H 0.271 0.729 27 H 0.161 0.839 28 H 0.145 0.855 29 H 0.165 0.835 30 H 0.136 0.864 31 H 0.173 0.827 32 H 0.154 0.846 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.346 0.654 36 H 0.341 0.659 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.564 -6.554 2.879 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.124 1.124 7 C -0.467 4.467 8 H 0.092 0.908 9 C -0.014 4.014 10 C -0.220 4.220 11 N -0.182 5.182 12 H 0.251 0.749 13 C -0.028 4.028 14 C -0.161 4.161 15 C -0.111 4.111 16 C -0.194 4.194 17 C 0.052 3.948 18 N -0.064 5.064 19 C -0.157 4.157 20 C -0.220 4.220 21 C -0.195 4.195 22 C 0.019 3.981 23 N -0.387 5.387 24 C -0.093 4.093 25 C -0.176 4.176 26 H 0.080 0.920 27 H 0.178 0.822 28 H 0.163 0.837 29 H 0.182 0.818 30 H 0.154 0.846 31 H 0.190 0.810 32 H 0.172 0.828 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.264 -6.780 2.873 9.668 hybrid contribution 0.273 1.164 -0.414 1.265 sum 6.538 -5.616 2.459 8.962 Atomic orbital electron populations 1.69789 1.08328 1.28507 1.43314 1.26385 0.95468 1.03643 0.93188 0.85595 0.78185 0.75634 0.82318 1.21077 1.22986 1.12410 1.18919 0.94153 0.89408 1.44185 0.90800 1.18433 0.92721 0.90846 0.99438 1.22486 0.99927 0.83676 1.15901 1.41279 1.12126 1.07166 1.57676 0.74937 1.18459 0.88120 0.93675 1.02546 1.20388 0.99739 0.91136 1.04872 1.20846 0.90963 1.00170 0.99168 1.20881 1.01344 0.90579 1.06553 1.17471 0.85976 0.89839 1.01529 1.41382 1.09392 1.18979 1.36666 1.22174 0.84444 1.03782 1.05256 1.20900 1.00486 0.96419 1.04236 1.19477 0.94067 0.99305 1.06656 1.19863 0.97789 0.86265 0.94231 1.58752 1.68193 1.04543 1.07195 1.21413 0.98475 0.89057 1.00388 1.19635 0.94266 0.96168 1.07546 0.91965 0.82163 0.83680 0.81799 0.84589 0.80962 0.82818 0.91813 0.93478 0.83979 0.84661 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.47 10.76 21.79 0.23 -48.23 16 2 C 0.02 1.10 5.47 85.16 0.47 1.56 16 3 Si 0.96 43.26 29.40 68.60 2.02 45.28 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.20 -8.49 5.86 99.48 0.58 -7.91 16 7 C -0.43 -24.52 7.84 23.28 0.18 -24.34 16 8 H 0.07 4.22 5.68 -2.91 -0.02 4.21 16 9 C -0.01 -0.49 5.98 -19.98 -0.12 -0.61 16 10 C -0.10 -4.95 10.78 84.28 0.91 -4.04 16 11 N -0.58 -24.64 5.99 -184.92 -1.11 -25.75 16 12 H 0.41 13.96 8.96 -92.72 -0.83 13.13 16 13 C 0.08 3.56 7.23 38.87 0.28 3.84 16 14 C -0.14 -4.55 10.07 22.42 0.23 -4.33 16 15 C -0.09 -2.69 10.01 22.26 0.22 -2.46 16 16 C -0.17 -5.90 9.77 22.41 0.22 -5.68 16 17 C 0.14 6.13 5.88 38.28 0.22 6.35 16 18 N -0.39 -16.51 2.56 -346.27 -0.89 -17.40 16 19 C -0.03 -1.05 11.22 83.18 0.93 -0.12 16 20 C -0.20 -6.57 10.81 22.16 0.24 -6.33 16 21 C -0.19 -6.95 5.65 -19.98 -0.11 -7.06 16 22 C 0.15 4.54 7.28 85.56 0.62 5.16 16 23 N -0.86 -26.12 8.23 -190.01 -1.56 -27.68 16 24 C 0.04 1.61 7.88 83.17 0.66 2.27 16 25 C -0.17 -8.22 6.13 -19.96 -0.12 -8.35 16 26 H 0.27 14.25 8.30 -92.71 -0.77 13.48 16 27 H 0.16 8.79 6.31 -2.91 -0.02 8.77 16 28 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 29 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 31 H 0.17 5.22 8.06 -2.91 -0.02 5.20 16 32 H 0.15 4.15 8.06 -2.91 -0.02 4.12 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.35 8.49 9.08 -89.69 -0.81 7.67 16 36 H 0.34 10.10 8.99 -89.69 -0.81 9.29 16 37 H 0.13 6.15 7.92 -2.91 -0.02 6.12 16 Total: -1.00 -67.24 310.81 2.08 -65.16 By element: Atomic # 1 Polarization: 54.20 SS G_CDS: -1.44 Total: 52.76 kcal Atomic # 6 Polarization: -48.96 SS G_CDS: 4.83 Total: -44.13 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -3.32 Total: -119.06 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.02 Total: 45.28 kcal Total: -67.24 2.08 -65.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169725493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.359 kcal (2) G-P(sol) polarization free energy of solvation -67.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds