Wall clock time and date at job start Tue Mar 31 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38258 * 119.98771 * 2 1 4 4 C 1.38190 * 120.01575 * 180.21346 * 3 2 1 5 5 C 1.38383 * 119.98366 * 359.50762 * 4 3 2 6 6 Cl 1.73596 * 120.00926 * 180.23309 * 5 4 3 7 7 C 1.38326 * 119.97226 * 0.25735 * 5 4 3 8 8 C 1.38222 * 119.98739 * 179.74423 * 2 1 3 9 9 C 1.50707 * 119.99227 * 0.02562 * 8 2 1 10 10 N 1.46897 * 109.47201 * 80.02026 * 9 8 2 11 11 C 1.46898 * 110.99865 * 180.02562 * 10 9 8 12 12 H 1.08996 * 109.47292 * 35.00145 * 11 10 9 13 13 C 1.52997 * 109.46926 * 274.99938 * 11 10 9 14 14 C 1.53007 * 109.46932 * 154.99999 * 11 10 9 15 15 C 1.52997 * 109.46852 * 294.99835 * 14 11 10 16 16 C 1.50710 * 109.46745 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00058 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00080 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99923 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47033 * 60.00024 * 20 18 16 22 22 H 1.48500 * 109.47408 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46984 * 300.00278 * 20 18 16 24 24 H 1.09002 * 109.47320 * 270.25572 * 1 2 3 25 25 H 1.08999 * 109.47534 * 30.25131 * 1 2 3 26 26 H 1.09005 * 109.47138 * 150.26080 * 1 2 3 27 27 H 1.08004 * 119.99444 * 359.97417 * 3 2 1 28 28 H 1.08002 * 120.01169 * 179.79330 * 4 3 2 29 29 H 1.08001 * 120.00370 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.46617 * 200.02326 * 9 8 2 31 31 H 1.09003 * 109.46767 * 320.01906 * 9 8 2 32 32 H 1.00903 * 111.00173 * 56.04343 * 10 9 8 33 33 H 1.08999 * 109.47602 * 60.00455 * 13 11 10 34 34 H 1.09003 * 109.47099 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.47195 * 299.99920 * 13 11 10 36 36 H 1.08998 * 109.47051 * 55.00306 * 14 11 10 37 37 H 1.08998 * 109.46755 * 174.99829 * 14 11 10 38 38 H 1.09002 * 109.47444 * 299.99645 * 15 14 11 39 39 H 1.08998 * 109.47446 * 60.00417 * 15 14 11 40 40 H 0.97007 * 120.00143 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5799 1.1982 -0.0045 5 6 4.2721 -0.0001 0.0014 6 17 6.0081 0.0000 0.0019 7 6 3.5802 -1.1978 0.0063 8 6 2.1978 -1.1972 0.0053 9 6 1.4438 -2.5021 0.0106 10 7 0.9916 -2.8117 -1.3523 11 6 0.2505 -4.0797 -1.3856 12 1 -0.3208 -4.1910 -0.4641 13 6 1.2356 -5.2427 -1.5187 14 6 -0.7046 -4.0809 -2.5810 15 6 -1.7663 -2.9965 -2.3865 16 6 -2.7074 -2.9981 -3.5637 17 1 -2.5629 -3.7024 -4.3696 18 6 -3.7527 -2.1005 -3.6117 19 7 -3.9284 -1.2425 -2.6306 20 14 -4.9188 -2.1019 -5.0710 21 1 -5.5794 -3.4279 -5.1755 22 1 -5.9494 -1.0495 -4.8822 23 1 -4.1550 -1.8301 -6.3152 24 1 -0.3634 0.0046 1.0277 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3634 -0.8923 -0.5098 27 1 1.6577 2.1327 -0.0004 28 1 4.1196 2.1337 -0.0078 29 1 4.1199 -2.1333 0.0104 30 1 2.0980 -3.2982 0.3661 31 1 0.5800 -2.4198 0.6702 32 1 1.7685 -2.8296 -1.9959 33 1 1.9160 -5.2420 -0.6672 34 1 0.6857 -6.1836 -1.5439 35 1 1.8068 -5.1314 -2.4404 36 1 -0.1440 -3.8810 -3.4942 37 1 -1.1891 -5.0542 -2.6579 38 1 -2.3269 -3.1965 -1.4734 39 1 -1.2817 -2.0232 -2.3096 40 1 -4.6641 -0.6112 -2.6642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:47 Heat of formation + Delta-G solvation = -9.046304 kcal Electronic energy + Delta-G solvation = -19564.348637 eV Core-core repulsion = 16596.591131 eV Total energy + Delta-G solvation = -2967.757506 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.70519 -37.21323 -36.49150 -33.58528 -32.60624 -32.06806 -30.20118 -28.76131 -26.68120 -25.28697 -24.56894 -22.10259 -21.31900 -20.70848 -19.79449 -16.74678 -16.14434 -15.97169 -15.25140 -15.17634 -14.56366 -14.26922 -13.77714 -13.66940 -13.47538 -12.83034 -12.76843 -12.64630 -12.35184 -12.29988 -12.00280 -11.81400 -11.45866 -11.23901 -11.17544 -11.08902 -11.03713 -10.84860 -10.65925 -10.46523 -10.19833 -9.63922 -9.21318 -8.95737 -8.90998 -8.41284 -8.22594 -7.91066 -5.89087 -3.89558 1.17902 1.25270 2.07906 3.38365 3.42611 3.45330 3.57579 4.54034 4.54303 4.78675 4.81971 5.00319 5.19607 5.29503 5.34255 5.43810 5.46779 5.55318 5.66004 5.74648 5.75442 5.86546 6.02634 6.07057 6.09413 6.19957 6.26188 6.32947 6.39229 6.58721 6.67456 6.78042 6.88448 6.94001 7.29692 7.45598 7.76339 7.84134 8.07277 8.22061 8.57609 9.18573 9.72942 11.21793 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.003847 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.302827 B = 7275.974258 C = 8120.490576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.042 4.042 3 C -0.114 4.114 4 C -0.109 4.109 5 C -0.047 4.047 6 Cl -0.083 7.083 7 C -0.103 4.103 8 C -0.071 4.071 9 C 0.099 3.901 10 N -0.664 5.664 11 C 0.084 3.916 12 H 0.073 0.927 13 C -0.181 4.181 14 C -0.099 4.099 15 C 0.030 3.970 16 C -0.519 4.519 17 H 0.049 0.951 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.886 3.114 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.337 0.663 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.006 0.994 39 H 0.034 0.966 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.036 1.363 8.082 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.042 4.042 3 C -0.133 4.133 4 C -0.128 4.128 5 C -0.073 4.073 6 Cl -0.055 7.055 7 C -0.122 4.122 8 C -0.072 4.072 9 C -0.030 4.030 10 N -0.295 5.295 11 C -0.026 4.026 12 H 0.091 0.909 13 C -0.240 4.240 14 C -0.137 4.137 15 C -0.007 4.007 16 C -0.557 4.557 17 H 0.068 0.932 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.714 3.286 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.204 1.204 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.122 0.878 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.050 0.950 31 H 0.103 0.897 32 H 0.155 0.845 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.052 0.948 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.489 1.882 8.189 17.621 hybrid contribution 0.314 -0.535 -0.742 0.967 sum 15.803 1.347 7.447 17.522 Atomic orbital electron populations 1.21015 0.89437 1.05817 1.02166 1.20054 0.97334 0.91850 0.94986 1.21072 0.93071 0.98334 1.00782 1.20986 0.94355 0.96583 1.00872 1.20776 0.83787 0.95219 1.07537 1.98348 1.10969 1.98985 1.97171 1.20897 0.93678 0.96676 1.00960 1.19706 0.92087 0.95471 0.99951 1.20894 0.97870 0.91637 0.92613 1.60543 1.28935 1.34507 1.05491 1.21765 0.94207 0.85557 1.01034 0.90911 1.22539 1.00078 1.00524 1.00853 1.21635 0.96738 1.00428 0.94863 1.19002 0.91702 0.94169 0.95807 1.21313 1.11546 1.17126 1.05755 0.93240 1.24964 0.97708 0.95712 0.95886 1.69955 1.31088 1.20580 1.31763 0.86769 0.80844 0.77494 0.83497 1.20466 1.21413 1.20402 0.91581 0.91422 0.87785 0.85141 0.85377 0.85506 0.94981 0.89669 0.84493 0.93743 0.92225 0.92767 0.93476 0.93518 0.97518 0.94807 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.26 36.01 0.33 -1.57 16 2 C -0.04 -0.57 5.88 -104.62 -0.62 -1.18 16 3 C -0.11 -1.39 9.70 -39.59 -0.38 -1.77 16 4 C -0.11 -1.25 9.83 -39.55 -0.39 -1.64 16 5 C -0.05 -0.56 6.32 -39.50 -0.25 -0.81 16 6 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.41 16 7 C -0.10 -1.25 9.45 -39.55 -0.37 -1.62 16 8 C -0.07 -0.94 5.39 -104.63 -0.56 -1.50 16 9 C 0.10 1.30 4.74 -4.97 -0.02 1.27 16 10 N -0.66 -10.08 5.03 -107.99 -0.54 -10.62 16 11 C 0.08 1.33 2.59 -67.71 -0.18 1.15 16 12 H 0.07 1.19 7.80 -51.93 -0.40 0.79 16 13 C -0.18 -2.34 9.16 37.16 0.34 -2.00 16 14 C -0.10 -1.97 4.83 -26.73 -0.13 -2.10 16 15 C 0.03 0.76 4.86 -27.88 -0.14 0.63 16 16 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 17 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 20 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 26 H 0.10 1.85 6.03 -51.93 -0.31 1.54 16 27 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 28 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.13 1.36 8.04 -52.49 -0.42 0.94 16 30 H 0.03 0.38 7.30 -51.93 -0.38 0.00 16 31 H 0.09 1.17 7.19 -51.93 -0.37 0.80 16 32 H 0.34 4.86 8.47 -39.29 -0.33 4.53 16 33 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.03 0.91 7.43 -51.93 -0.39 0.52 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 343.52 15.07 5.18 5.18 Total: -1.00 -29.31 343.52 -10.27 -39.58 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.34 Total: 1.97 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -2.78 Total: -24.61 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.19 Total: -36.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.31 -10.27 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.536 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds