Wall clock time and date at job start Tue Mar 31 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38258 * 119.98771 * 2 1 4 4 C 1.38190 * 120.01575 * 180.21346 * 3 2 1 5 5 C 1.38383 * 119.98366 * 359.50762 * 4 3 2 6 6 Cl 1.73596 * 120.00926 * 180.23309 * 5 4 3 7 7 C 1.38326 * 119.97226 * 0.25735 * 5 4 3 8 8 C 1.38222 * 119.98739 * 179.74423 * 2 1 3 9 9 C 1.50707 * 119.99227 * 0.02562 * 8 2 1 10 10 N 1.46897 * 109.47201 * 80.02026 * 9 8 2 11 11 C 1.46898 * 110.99865 * 180.02562 * 10 9 8 12 12 H 1.08996 * 109.47292 * 35.00145 * 11 10 9 13 13 C 1.52997 * 109.46926 * 274.99938 * 11 10 9 14 14 C 1.53007 * 109.46932 * 154.99999 * 11 10 9 15 15 C 1.52997 * 109.46852 * 294.99835 * 14 11 10 16 16 C 1.50710 * 109.46745 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00058 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00080 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99923 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47033 * 60.00024 * 20 18 16 22 22 H 1.48500 * 109.47408 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46984 * 300.00278 * 20 18 16 24 24 H 1.09002 * 109.47320 * 270.25572 * 1 2 3 25 25 H 1.08999 * 109.47534 * 30.25131 * 1 2 3 26 26 H 1.09005 * 109.47138 * 150.26080 * 1 2 3 27 27 H 1.08004 * 119.99444 * 359.97417 * 3 2 1 28 28 H 1.08002 * 120.01169 * 179.79330 * 4 3 2 29 29 H 1.08001 * 120.00370 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.46617 * 200.02326 * 9 8 2 31 31 H 1.09003 * 109.46767 * 320.01906 * 9 8 2 32 32 H 1.00903 * 111.00173 * 56.04343 * 10 9 8 33 33 H 1.08999 * 109.47602 * 60.00455 * 13 11 10 34 34 H 1.09003 * 109.47099 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.47195 * 299.99920 * 13 11 10 36 36 H 1.08998 * 109.47051 * 55.00306 * 14 11 10 37 37 H 1.08998 * 109.46755 * 174.99829 * 14 11 10 38 38 H 1.09002 * 109.47444 * 299.99645 * 15 14 11 39 39 H 1.08998 * 109.47446 * 60.00417 * 15 14 11 40 40 H 0.97007 * 120.00143 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5799 1.1982 -0.0045 5 6 4.2721 -0.0001 0.0014 6 17 6.0081 0.0000 0.0019 7 6 3.5802 -1.1978 0.0063 8 6 2.1978 -1.1972 0.0053 9 6 1.4438 -2.5021 0.0106 10 7 0.9916 -2.8117 -1.3523 11 6 0.2505 -4.0797 -1.3856 12 1 -0.3208 -4.1910 -0.4641 13 6 1.2356 -5.2427 -1.5187 14 6 -0.7046 -4.0809 -2.5810 15 6 -1.7663 -2.9965 -2.3865 16 6 -2.7074 -2.9981 -3.5637 17 1 -2.5629 -3.7024 -4.3696 18 6 -3.7527 -2.1005 -3.6117 19 7 -3.9284 -1.2425 -2.6306 20 14 -4.9188 -2.1019 -5.0710 21 1 -5.5794 -3.4279 -5.1755 22 1 -5.9494 -1.0495 -4.8822 23 1 -4.1550 -1.8301 -6.3152 24 1 -0.3634 0.0046 1.0277 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3634 -0.8923 -0.5098 27 1 1.6577 2.1327 -0.0004 28 1 4.1196 2.1337 -0.0078 29 1 4.1199 -2.1333 0.0104 30 1 2.0980 -3.2982 0.3661 31 1 0.5800 -2.4198 0.6702 32 1 1.7685 -2.8296 -1.9959 33 1 1.9160 -5.2420 -0.6672 34 1 0.6857 -6.1836 -1.5439 35 1 1.8068 -5.1314 -2.4404 36 1 -0.1440 -3.8810 -3.4942 37 1 -1.1891 -5.0542 -2.6579 38 1 -2.3269 -3.1965 -1.4734 39 1 -1.2817 -2.0232 -2.3096 40 1 -4.6641 -0.6112 -2.6642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:47 Heat of formation + Delta-G solvation = -23.853632 kcal Electronic energy + Delta-G solvation = -19564.990731 eV Core-core repulsion = 16596.591131 eV Total energy + Delta-G solvation = -2968.399600 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69353 -38.44155 -37.44211 -35.36080 -34.02556 -33.21582 -31.74176 -30.07520 -27.76975 -26.97081 -25.85144 -23.24629 -22.92348 -21.74386 -21.27339 -18.32284 -17.70642 -17.01112 -16.52405 -16.46859 -16.16482 -15.55348 -14.94463 -14.80999 -14.47382 -14.35008 -14.07151 -13.84150 -13.71230 -13.59490 -13.31622 -13.17437 -12.87995 -12.81447 -12.67460 -12.34126 -12.23758 -12.09265 -12.02632 -11.83328 -11.56865 -11.47648 -11.15976 -10.92772 -10.42932 -9.89673 -9.40341 -9.08784 -8.09502 -6.18645 0.19811 0.30671 1.16676 1.41563 1.43928 1.51425 2.46245 2.59367 3.22687 3.44121 3.80019 3.85414 4.03205 4.09811 4.21474 4.28264 4.37454 4.49454 4.53345 4.68980 4.75369 4.79575 4.82311 4.86790 5.02095 5.05953 5.08693 5.13933 5.24765 5.31459 5.35282 5.43254 5.51275 5.64011 5.72893 5.87685 5.95223 6.10279 6.28305 6.40142 6.62948 7.00452 7.48556 9.00862 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.003847 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.302827 B = 7275.974258 C = 8120.490576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.061 4.061 3 C -0.117 4.117 4 C -0.108 4.108 5 C -0.052 4.052 6 Cl -0.072 7.072 7 C -0.102 4.102 8 C -0.079 4.079 9 C 0.106 3.894 10 N -0.681 5.681 11 C 0.092 3.908 12 H 0.064 0.936 13 C -0.169 4.169 14 C -0.089 4.089 15 C 0.041 3.959 16 C -0.545 4.545 17 H 0.051 0.949 18 C 0.004 3.996 19 N -0.926 5.926 20 Si 0.954 3.046 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.270 1.270 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.342 0.658 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.047 0.953 38 H -0.022 1.022 39 H 0.010 0.990 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.517 1.023 7.716 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.126 4.126 5 C -0.079 4.079 6 Cl -0.043 7.043 7 C -0.121 4.121 8 C -0.080 4.080 9 C -0.023 4.023 10 N -0.313 5.313 11 C -0.017 4.017 12 H 0.082 0.918 13 C -0.228 4.228 14 C -0.127 4.127 15 C 0.004 3.996 16 C -0.583 4.583 17 H 0.069 0.931 18 C -0.194 4.194 19 N -0.567 5.567 20 Si 0.779 3.221 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.196 1.196 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.163 0.837 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.161 0.839 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.066 0.934 38 H -0.004 1.004 39 H 0.029 0.971 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.985 1.530 7.823 18.763 hybrid contribution -0.116 -0.380 -0.602 0.721 sum 16.869 1.150 7.221 18.386 Atomic orbital electron populations 1.20846 0.90948 1.03693 1.02150 1.20045 0.96421 0.93023 0.96628 1.21246 0.93620 0.98345 1.00331 1.21234 0.94076 0.97466 0.99849 1.20931 0.84500 0.95357 1.07063 1.98354 1.09924 1.98971 1.97088 1.21026 0.93153 0.97559 1.00373 1.19700 0.92650 0.95055 1.00582 1.20809 0.97753 0.92503 0.91191 1.60397 1.29542 1.34372 1.06944 1.21517 0.94347 0.87446 0.98427 0.91809 1.22395 0.99470 0.98900 1.02062 1.21463 0.96136 0.98279 0.96812 1.18818 0.92306 0.94902 0.93616 1.21787 1.12492 1.17309 1.06683 0.93064 1.25843 0.99503 0.95272 0.98789 1.70092 1.31748 1.21173 1.33663 0.85678 0.78588 0.77878 0.79930 1.19475 1.20896 1.19559 0.90732 0.92145 0.91114 0.83706 0.83261 0.83941 0.92853 0.91006 0.83949 0.91726 0.91783 0.92157 0.93719 0.93427 1.00398 0.97112 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.74 9.26 71.24 0.66 -3.08 16 2 C -0.06 -1.66 5.88 -19.86 -0.12 -1.77 16 3 C -0.12 -2.74 9.70 22.26 0.22 -2.53 16 4 C -0.11 -2.27 9.83 22.29 0.22 -2.05 16 5 C -0.05 -1.14 6.32 22.33 0.14 -1.00 16 6 Cl -0.07 -1.41 28.96 -2.72 -0.08 -1.49 16 7 C -0.10 -2.29 9.45 22.29 0.21 -2.08 16 8 C -0.08 -2.03 5.39 -19.87 -0.11 -2.13 16 9 C 0.11 2.74 4.74 85.56 0.41 3.15 16 10 N -0.68 -20.70 5.03 -495.57 -2.49 -23.20 16 11 C 0.09 2.90 2.59 44.92 0.12 3.02 16 12 H 0.06 2.11 7.80 -2.39 -0.02 2.10 16 13 C -0.17 -4.02 9.16 71.98 0.66 -3.36 16 14 C -0.09 -3.60 4.83 30.60 0.15 -3.45 16 15 C 0.04 2.14 4.86 29.85 0.15 2.29 16 16 C -0.54 -31.52 9.11 25.60 0.23 -31.28 16 17 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 18 C 0.00 0.22 5.46 84.65 0.46 0.68 16 19 N -0.93 -56.52 13.29 21.44 0.28 -56.23 16 20 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.06 1.90 8.09 -2.39 -0.02 1.88 16 26 H 0.07 2.70 6.03 -2.38 -0.01 2.68 16 27 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 28 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.14 2.69 8.04 -2.91 -0.02 2.67 16 30 H 0.05 1.15 7.30 -2.39 -0.02 1.13 16 31 H 0.07 2.03 7.19 -2.39 -0.02 2.02 16 32 H 0.34 9.62 8.47 -89.69 -0.76 8.86 16 33 H 0.06 1.29 7.45 -2.39 -0.02 1.28 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.37 8.13 -2.38 -0.02 1.35 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 39 H 0.01 0.60 7.43 -2.39 -0.02 0.58 16 40 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -63.65 343.52 3.39 -60.26 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.26 Total: 17.28 kcal Atomic # 6 Polarization: -47.00 SS G_CDS: 3.39 Total: -43.61 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -2.21 Total: -79.43 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -63.65 3.39 -60.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.405 kcal (2) G-P(sol) polarization free energy of solvation -63.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds