Wall clock time and date at job start Tue Mar 31 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38258 * 119.98771 * 2 1 4 4 C 1.38190 * 120.01575 * 180.21346 * 3 2 1 5 5 C 1.38383 * 119.98366 * 359.50762 * 4 3 2 6 6 Cl 1.73596 * 120.00926 * 180.23309 * 5 4 3 7 7 C 1.38326 * 119.97226 * 0.25735 * 5 4 3 8 8 C 1.38222 * 119.98739 * 179.74423 * 2 1 3 9 9 C 1.50707 * 119.99227 * 0.02562 * 8 2 1 10 10 N 1.46897 * 109.47201 * 80.02026 * 9 8 2 11 11 C 1.46898 * 110.99865 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.47263 * 324.99975 * 11 10 9 13 13 C 1.53002 * 109.47370 * 84.99988 * 11 10 9 14 14 C 1.53007 * 109.46793 * 204.99977 * 11 10 9 15 15 C 1.52997 * 109.47124 * 65.00082 * 14 11 10 16 16 C 1.50700 * 109.47047 * 179.97438 * 15 14 11 17 17 H 1.08004 * 119.99873 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99945 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99851 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47233 * 89.99428 * 20 18 16 22 22 H 1.48497 * 109.46917 * 209.99619 * 20 18 16 23 23 H 1.48499 * 109.46838 * 329.99376 * 20 18 16 24 24 H 1.09002 * 109.47320 * 270.25572 * 1 2 3 25 25 H 1.08999 * 109.47534 * 30.25131 * 1 2 3 26 26 H 1.09005 * 109.47138 * 150.26080 * 1 2 3 27 27 H 1.08004 * 119.99444 * 359.97417 * 3 2 1 28 28 H 1.08002 * 120.01169 * 179.79330 * 4 3 2 29 29 H 1.08001 * 120.00370 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.46617 * 200.02326 * 9 8 2 31 31 H 1.09003 * 109.46767 * 320.01906 * 9 8 2 32 32 H 1.00902 * 111.00217 * 303.95266 * 10 9 8 33 33 H 1.09000 * 109.46740 * 300.00012 * 13 11 10 34 34 H 1.09004 * 109.46690 * 60.00112 * 13 11 10 35 35 H 1.08993 * 109.47190 * 179.97438 * 13 11 10 36 36 H 1.09001 * 109.46844 * 185.00107 * 14 11 10 37 37 H 1.09000 * 109.46872 * 304.99692 * 14 11 10 38 38 H 1.09001 * 109.47281 * 299.99757 * 15 14 11 39 39 H 1.09000 * 109.46916 * 59.99651 * 15 14 11 40 40 H 0.96999 * 119.99677 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5799 1.1982 -0.0045 5 6 4.2721 -0.0001 0.0014 6 17 6.0081 0.0000 0.0019 7 6 3.5802 -1.1978 0.0063 8 6 2.1978 -1.1972 0.0053 9 6 1.4438 -2.5021 0.0106 10 7 0.9916 -2.8117 -1.3523 11 6 0.2505 -4.0797 -1.3856 12 1 0.6844 -4.7732 -0.6653 13 6 -1.2149 -3.8235 -1.0280 14 6 0.3351 -4.6830 -2.7892 15 6 1.7868 -5.0544 -3.0981 16 6 1.8699 -5.6492 -4.4802 17 1 0.9766 -5.7524 -5.0783 18 6 3.0863 -6.0626 -4.9808 19 7 4.1740 -5.9373 -4.2522 20 14 3.1895 -6.7992 -6.6943 21 1 3.4299 -5.7185 -7.6841 22 1 4.3068 -7.7760 -6.7467 23 1 1.9138 -7.4887 -7.0143 24 1 -0.3634 0.0046 1.0277 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3634 -0.8923 -0.5098 27 1 1.6577 2.1327 -0.0004 28 1 4.1196 2.1337 -0.0078 29 1 4.1199 -2.1333 0.0104 30 1 2.0980 -3.2982 0.3661 31 1 0.5800 -2.4198 0.6702 32 1 0.4358 -2.0585 -1.7288 33 1 -1.2751 -3.3937 -0.0282 34 1 -1.6488 -3.1300 -1.7484 35 1 -1.7648 -4.7642 -1.0532 36 1 -0.2870 -5.5767 -2.8386 37 1 -0.0170 -3.9545 -3.5196 38 1 2.4089 -4.1607 -3.0487 39 1 2.1387 -5.7828 -2.3676 40 1 5.0298 -6.2278 -4.6046 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:49 Heat of formation + Delta-G solvation = -7.211965 kcal Electronic energy + Delta-G solvation = -19487.076171 eV Core-core repulsion = 16519.398208 eV Total energy + Delta-G solvation = -2967.677963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.79504 -37.23209 -36.40428 -33.64539 -32.62867 -32.16353 -30.18683 -28.79436 -27.00237 -25.33132 -24.50675 -22.21872 -21.33377 -20.78907 -19.76587 -16.74437 -16.09536 -16.07203 -15.36769 -15.22757 -14.53185 -14.25096 -13.92910 -13.73154 -13.60229 -12.94431 -12.87505 -12.73619 -12.51091 -12.31542 -12.22169 -11.84895 -11.56162 -11.27165 -11.21649 -11.13277 -11.08364 -10.85096 -10.67769 -10.42302 -10.19529 -9.62040 -9.19436 -8.92869 -8.87593 -8.50824 -8.20427 -7.88971 -5.85541 -3.86605 1.10689 1.26698 2.17528 3.39308 3.45266 3.48227 3.52634 4.52803 4.56576 4.67746 4.80963 4.87387 5.04942 5.19340 5.29490 5.33494 5.43660 5.47810 5.50019 5.59862 5.62647 5.66680 5.75261 5.90767 5.95218 6.08279 6.20979 6.24410 6.28431 6.39367 6.54077 6.67217 6.79450 6.89462 7.31286 7.46318 7.76813 7.87425 8.10530 8.26477 8.60461 9.22366 9.75911 11.25514 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.004582 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.121771 B = 6109.840838 C = 7757.775684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 C -0.112 4.112 4 C -0.112 4.112 5 C -0.038 4.038 6 Cl -0.075 7.075 7 C -0.083 4.083 8 C -0.061 4.061 9 C 0.097 3.903 10 N -0.664 5.664 11 C 0.083 3.917 12 H 0.073 0.927 13 C -0.182 4.182 14 C -0.098 4.098 15 C 0.029 3.971 16 C -0.518 4.518 17 H 0.050 0.950 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.886 3.114 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.335 0.665 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.007 0.993 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 14.333 12.741 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.079 4.079 3 C -0.130 4.130 4 C -0.131 4.131 5 C -0.065 4.065 6 Cl -0.046 7.046 7 C -0.102 4.102 8 C -0.062 4.062 9 C -0.032 4.032 10 N -0.296 5.296 11 C -0.026 4.026 12 H 0.092 0.908 13 C -0.241 4.241 14 C -0.136 4.136 15 C -0.008 4.008 16 C -0.557 4.557 17 H 0.068 0.932 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.714 3.286 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.201 1.201 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.154 0.846 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.025 0.975 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.895 13.986 12.547 19.416 hybrid contribution -0.413 -0.129 -0.623 0.758 sum -5.308 13.857 11.923 19.036 Atomic orbital electron populations 1.20871 0.91121 1.03101 1.02342 1.19852 0.96192 0.92608 0.99275 1.20889 0.93230 0.97688 1.01196 1.20971 0.94264 0.96693 1.01183 1.20895 0.84449 0.95160 1.05955 1.98368 1.10281 1.98963 1.96982 1.21028 0.93672 0.97237 0.98265 1.19669 0.92898 0.94661 0.98946 1.20905 0.97497 0.93563 0.91187 1.60616 1.45269 1.04832 1.18837 1.21780 0.89772 0.90896 1.00194 0.90849 1.22557 0.99161 1.02067 1.00273 1.21629 1.01569 0.98005 0.92388 1.18995 0.89797 0.96792 0.95185 1.21343 0.93185 1.40023 1.01145 0.93158 1.24990 0.95986 0.96227 0.97172 1.69976 0.98529 1.48108 1.36769 0.86697 0.77488 0.79027 0.85363 1.20801 1.21371 1.20052 0.91092 0.91243 0.91320 0.85407 0.85283 0.84472 0.89938 0.94496 0.84567 0.93702 0.92785 0.92118 0.93473 0.93512 0.94891 0.97511 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.23 36.01 0.33 -0.72 16 2 C -0.08 -0.89 5.87 -104.62 -0.61 -1.51 16 3 C -0.11 -1.18 9.70 -39.59 -0.38 -1.56 16 4 C -0.11 -1.28 9.83 -39.55 -0.39 -1.67 16 5 C -0.04 -0.50 6.32 -39.50 -0.25 -0.75 16 6 Cl -0.07 -0.97 28.96 -51.86 -1.50 -2.47 16 7 C -0.08 -1.18 9.45 -39.55 -0.37 -1.55 16 8 C -0.06 -0.81 5.39 -104.63 -0.56 -1.37 16 9 C 0.10 1.31 4.84 -4.97 -0.02 1.28 16 10 N -0.66 -10.45 5.67 -107.99 -0.61 -11.07 16 11 C 0.08 1.35 2.59 -67.71 -0.18 1.17 16 12 H 0.07 1.24 7.80 -51.93 -0.41 0.83 16 13 C -0.18 -2.31 9.16 37.16 0.34 -1.97 16 14 C -0.10 -2.01 4.83 -26.73 -0.13 -2.14 16 15 C 0.03 0.77 4.86 -27.88 -0.14 0.64 16 16 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 17 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.68 13.29 55.43 0.74 -26.95 16 20 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.07 0.65 5.26 -51.93 -0.27 0.38 16 27 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 28 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.14 2.02 8.04 -52.49 -0.42 1.60 16 30 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 31 H 0.04 0.43 6.57 -51.93 -0.34 0.09 16 32 H 0.33 4.85 6.72 -39.29 -0.26 4.59 16 33 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 34 H 0.05 0.66 8.13 -51.93 -0.42 0.23 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -31.38 342.02 -10.27 -41.65 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.25 Total: 0.42 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.78 Total: -23.98 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.12 Total: -38.01 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.38 -10.27 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.438 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds