Wall clock time and date at job start Tue Mar 31 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38258 * 119.98771 * 2 1 4 4 C 1.38190 * 120.01575 * 180.21346 * 3 2 1 5 5 C 1.38383 * 119.98366 * 359.50762 * 4 3 2 6 6 Cl 1.73596 * 120.00926 * 180.23309 * 5 4 3 7 7 C 1.38326 * 119.97226 * 0.25735 * 5 4 3 8 8 C 1.38222 * 119.98739 * 179.74423 * 2 1 3 9 9 C 1.50707 * 119.99227 * 0.02562 * 8 2 1 10 10 N 1.46897 * 109.47201 * 80.02026 * 9 8 2 11 11 C 1.46898 * 110.99865 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.47263 * 324.99975 * 11 10 9 13 13 C 1.53002 * 109.47370 * 84.99988 * 11 10 9 14 14 C 1.53007 * 109.46793 * 204.99977 * 11 10 9 15 15 C 1.52997 * 109.47124 * 65.00082 * 14 11 10 16 16 C 1.50700 * 109.47047 * 179.97438 * 15 14 11 17 17 H 1.08004 * 119.99873 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99945 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99851 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47233 * 89.99428 * 20 18 16 22 22 H 1.48497 * 109.46917 * 209.99619 * 20 18 16 23 23 H 1.48499 * 109.46838 * 329.99376 * 20 18 16 24 24 H 1.09002 * 109.47320 * 270.25572 * 1 2 3 25 25 H 1.08999 * 109.47534 * 30.25131 * 1 2 3 26 26 H 1.09005 * 109.47138 * 150.26080 * 1 2 3 27 27 H 1.08004 * 119.99444 * 359.97417 * 3 2 1 28 28 H 1.08002 * 120.01169 * 179.79330 * 4 3 2 29 29 H 1.08001 * 120.00370 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.46617 * 200.02326 * 9 8 2 31 31 H 1.09003 * 109.46767 * 320.01906 * 9 8 2 32 32 H 1.00902 * 111.00217 * 303.95266 * 10 9 8 33 33 H 1.09000 * 109.46740 * 300.00012 * 13 11 10 34 34 H 1.09004 * 109.46690 * 60.00112 * 13 11 10 35 35 H 1.08993 * 109.47190 * 179.97438 * 13 11 10 36 36 H 1.09001 * 109.46844 * 185.00107 * 14 11 10 37 37 H 1.09000 * 109.46872 * 304.99692 * 14 11 10 38 38 H 1.09001 * 109.47281 * 299.99757 * 15 14 11 39 39 H 1.09000 * 109.46916 * 59.99651 * 15 14 11 40 40 H 0.96999 * 119.99677 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5799 1.1982 -0.0045 5 6 4.2721 -0.0001 0.0014 6 17 6.0081 0.0000 0.0019 7 6 3.5802 -1.1978 0.0063 8 6 2.1978 -1.1972 0.0053 9 6 1.4438 -2.5021 0.0106 10 7 0.9916 -2.8117 -1.3523 11 6 0.2505 -4.0797 -1.3856 12 1 0.6844 -4.7732 -0.6653 13 6 -1.2149 -3.8235 -1.0280 14 6 0.3351 -4.6830 -2.7892 15 6 1.7868 -5.0544 -3.0981 16 6 1.8699 -5.6492 -4.4802 17 1 0.9766 -5.7524 -5.0783 18 6 3.0863 -6.0626 -4.9808 19 7 4.1740 -5.9373 -4.2522 20 14 3.1895 -6.7992 -6.6943 21 1 3.4299 -5.7185 -7.6841 22 1 4.3068 -7.7760 -6.7467 23 1 1.9138 -7.4887 -7.0143 24 1 -0.3634 0.0046 1.0277 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3634 -0.8923 -0.5098 27 1 1.6577 2.1327 -0.0004 28 1 4.1196 2.1337 -0.0078 29 1 4.1199 -2.1333 0.0104 30 1 2.0980 -3.2982 0.3661 31 1 0.5800 -2.4198 0.6702 32 1 0.4358 -2.0585 -1.7288 33 1 -1.2751 -3.3937 -0.0282 34 1 -1.6488 -3.1300 -1.7484 35 1 -1.7648 -4.7642 -1.0532 36 1 -0.2870 -5.5767 -2.8386 37 1 -0.0170 -3.9545 -3.5196 38 1 2.4089 -4.1607 -3.0487 39 1 2.1387 -5.7828 -2.3676 40 1 5.0298 -6.2278 -4.6046 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172479667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:49 Heat of formation + Delta-G solvation = -24.542538 kcal Electronic energy + Delta-G solvation = -19487.827681 eV Core-core repulsion = 16519.398208 eV Total energy + Delta-G solvation = -2968.429473 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74685 -38.48593 -37.45333 -35.42315 -34.07282 -33.18709 -31.77277 -30.10953 -27.84250 -27.03231 -25.81549 -23.22501 -23.08028 -21.78318 -21.27209 -18.36755 -17.70022 -17.06104 -16.60278 -16.49610 -16.21268 -15.52289 -14.99742 -14.82592 -14.48812 -14.45842 -14.10213 -13.84201 -13.76628 -13.62333 -13.38338 -13.09875 -12.96597 -12.84680 -12.71002 -12.34158 -12.21530 -12.13969 -12.09191 -11.84030 -11.60691 -11.50827 -11.20471 -10.94723 -10.48031 -9.89620 -9.44292 -9.09104 -8.13009 -6.23526 0.16970 0.31222 1.17848 1.39404 1.41313 1.51943 2.43915 2.57756 3.19390 3.43143 3.76557 3.86124 3.99742 4.06401 4.19637 4.22409 4.37263 4.44603 4.50047 4.60873 4.76901 4.80340 4.81711 4.83720 4.97818 5.00975 5.06219 5.13231 5.20935 5.29321 5.31402 5.35101 5.48852 5.59960 5.62013 5.88221 5.91005 6.04206 6.25617 6.35506 6.63726 6.96971 7.44707 8.98208 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013348 B = 0.004582 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.121771 B = 6109.840838 C = 7757.775684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C -0.107 4.107 4 C -0.112 4.112 5 C -0.054 4.054 6 Cl -0.082 7.082 7 C -0.109 4.109 8 C -0.077 4.077 9 C 0.105 3.895 10 N -0.687 5.687 11 C 0.090 3.910 12 H 0.060 0.940 13 C -0.169 4.169 14 C -0.088 4.088 15 C 0.038 3.962 16 C -0.542 4.542 17 H 0.056 0.944 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.960 3.040 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.262 1.262 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.163 0.837 28 H 0.151 0.849 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.343 0.657 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.001 0.999 39 H -0.025 1.025 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 15.858 12.462 21.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.124 4.124 4 C -0.130 4.130 5 C -0.081 4.081 6 Cl -0.053 7.053 7 C -0.128 4.128 8 C -0.077 4.077 9 C -0.023 4.023 10 N -0.319 5.319 11 C -0.020 4.020 12 H 0.079 0.921 13 C -0.228 4.228 14 C -0.126 4.126 15 C 0.001 3.999 16 C -0.580 4.580 17 H 0.074 0.926 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.785 3.215 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.186 1.186 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.082 0.918 27 H 0.181 0.819 28 H 0.169 0.831 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.164 0.836 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.020 0.980 39 H -0.006 1.006 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.235 15.516 12.274 21.065 hybrid contribution 0.339 -0.571 -0.512 0.838 sum -6.895 14.945 11.763 20.230 Atomic orbital electron populations 1.20935 0.88940 1.03778 1.03628 1.20186 0.97775 0.91974 0.97818 1.21315 0.92891 0.98799 0.99431 1.21301 0.95003 0.96641 1.00083 1.21041 0.84246 0.95675 1.07104 1.98356 1.10909 1.98987 1.97086 1.21013 0.94570 0.96970 1.00295 1.19720 0.92460 0.95451 1.00114 1.20805 0.97954 0.93242 0.90333 1.60457 1.45850 1.04916 1.20726 1.21547 0.92637 0.90870 0.96924 0.92120 1.22398 0.95788 1.02780 1.01791 1.21458 0.97253 0.98491 0.95389 1.18820 0.93180 0.94296 0.93571 1.21826 0.93600 1.40187 1.02380 0.92586 1.25958 0.95541 0.96607 1.01793 1.70131 0.99181 1.49116 1.38995 0.85527 0.78014 0.78292 0.79683 1.19971 1.20877 1.18616 0.89377 0.89332 0.91846 0.81899 0.83143 0.86725 0.92013 0.91900 0.83629 0.91410 0.91781 0.91654 0.93086 0.93449 0.98026 1.00626 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.23 71.24 0.66 -1.01 16 2 C -0.08 -1.58 5.87 -19.86 -0.12 -1.70 16 3 C -0.11 -1.94 9.70 22.26 0.22 -1.72 16 4 C -0.11 -2.37 9.83 22.29 0.22 -2.15 16 5 C -0.05 -1.46 6.32 22.33 0.14 -1.32 16 6 Cl -0.08 -2.21 28.96 -2.72 -0.08 -2.29 16 7 C -0.11 -3.27 9.45 22.29 0.21 -3.06 16 8 C -0.08 -2.03 5.39 -19.87 -0.11 -2.14 16 9 C 0.10 2.84 4.84 85.56 0.41 3.25 16 10 N -0.69 -21.66 5.67 -495.56 -2.81 -24.47 16 11 C 0.09 2.89 2.59 44.92 0.12 3.01 16 12 H 0.06 2.09 7.80 -2.39 -0.02 2.07 16 13 C -0.17 -3.86 9.16 71.98 0.66 -3.20 16 14 C -0.09 -3.64 4.83 30.60 0.15 -3.49 16 15 C 0.04 2.12 4.86 29.85 0.15 2.26 16 16 C -0.54 -32.16 9.11 25.60 0.23 -31.93 16 17 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 18 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 19 N -0.93 -59.56 13.29 21.45 0.28 -59.28 16 20 Si 0.96 46.02 29.54 68.60 2.03 48.04 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 0.96 8.09 -2.39 -0.02 0.94 16 26 H 0.06 1.00 5.26 -2.38 -0.01 0.99 16 27 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 28 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.11 3.80 8.04 -2.91 -0.02 3.78 16 30 H 0.06 1.88 7.92 -2.39 -0.02 1.86 16 31 H 0.06 1.35 6.57 -2.39 -0.02 1.34 16 32 H 0.34 9.57 6.72 -89.69 -0.60 8.97 16 33 H 0.07 1.27 7.45 -2.39 -0.02 1.25 16 34 H 0.06 1.36 8.13 -2.38 -0.02 1.34 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.00 0.08 7.75 -2.39 -0.02 0.06 16 39 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 40 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -70.19 342.02 3.24 -66.95 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.42 Total: 13.90 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 3.40 Total: -42.85 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -2.52 Total: -83.75 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.08 Total: -2.29 kcal Total: -70.19 3.24 -66.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.410 kcal (2) G-P(sol) polarization free energy of solvation -70.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds