Wall clock time and date at job start Tue Mar 31 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38264 * 119.98382 * 2 1 4 4 C 1.38189 * 120.01199 * 180.02562 * 3 2 1 5 5 C 1.38377 * 119.99104 * 359.97438 * 4 3 2 6 6 Cl 1.73595 * 120.01640 * 180.27805 * 5 4 3 7 7 C 1.38335 * 119.96836 * 0.02562 * 5 4 3 8 8 C 1.50697 * 120.00390 * 179.97438 * 7 5 4 9 9 N 1.46911 * 109.47292 * 284.99835 * 8 7 5 10 10 C 1.46897 * 111.00028 * 180.02562 * 9 8 7 11 11 H 1.08992 * 109.47177 * 35.00106 * 10 9 8 12 12 C 1.52996 * 109.47128 * 275.00005 * 10 9 8 13 13 C 1.52995 * 109.46861 * 155.00158 * 10 9 8 14 14 C 1.53002 * 109.47267 * 294.99980 * 13 10 9 15 15 C 1.50702 * 109.47338 * 180.02562 * 14 13 10 16 16 H 1.07998 * 119.99662 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99894 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99723 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00240 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47290 * 89.99868 * 19 17 15 21 21 H 1.48500 * 109.47204 * 210.00015 * 19 17 15 22 22 H 1.48505 * 109.46776 * 329.99538 * 19 17 15 23 23 C 1.38220 * 119.99034 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47190 * 269.97410 * 1 2 3 25 25 H 1.08994 * 109.46976 * 29.97958 * 1 2 3 26 26 H 1.09006 * 109.46534 * 149.98034 * 1 2 3 27 27 H 1.07997 * 119.99869 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.00973 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47541 * 44.99444 * 8 7 5 30 30 H 1.08998 * 109.47302 * 165.00366 * 8 7 5 31 31 H 1.00900 * 110.99348 * 56.04801 * 9 8 7 32 32 H 1.09000 * 109.47357 * 300.00379 * 12 10 9 33 33 H 1.09002 * 109.47391 * 60.00266 * 12 10 9 34 34 H 1.08994 * 109.47357 * 180.02562 * 12 10 9 35 35 H 1.08998 * 109.47662 * 54.99831 * 13 10 9 36 36 H 1.09000 * 109.47470 * 174.99831 * 13 10 9 37 37 H 1.09006 * 109.46878 * 300.00214 * 14 13 10 38 38 H 1.09000 * 109.47159 * 60.00091 * 14 13 10 39 39 H 0.97006 * 119.99591 * 179.97438 * 18 17 15 40 40 H 1.08002 * 119.99090 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1976 0.0000 4 6 3.5799 1.1983 -0.0005 5 6 4.2722 0.0001 -0.0005 6 17 6.0081 0.0002 0.0061 7 6 3.5802 -1.1977 -0.0005 8 6 4.3333 -2.5030 -0.0011 9 7 4.8880 -2.7478 -1.3393 10 6 5.6301 -4.0149 -1.3778 11 1 5.1432 -4.7411 -0.7271 12 6 7.0640 -3.7810 -0.8980 13 6 5.6528 -4.5492 -2.8113 14 6 4.2289 -4.9006 -3.2472 15 6 4.2513 -5.4275 -4.6589 16 1 5.1875 -5.5044 -5.1918 17 6 3.0767 -5.8122 -5.2698 18 7 3.0962 -6.2715 -6.5020 19 14 1.4574 -5.6798 -4.3479 20 1 0.8564 -4.3441 -4.5922 21 1 0.5283 -6.7354 -4.8251 22 1 1.7003 -5.8549 -2.8933 23 6 2.1979 -1.1971 -0.0005 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3632 -0.8899 -0.5142 27 1 1.6577 2.1327 0.0004 28 1 4.1196 2.1338 -0.0001 29 1 5.1447 -2.4548 0.7252 30 1 3.6552 -3.3139 0.2649 31 1 5.4697 -1.9785 -1.6357 32 1 7.5510 -3.0548 -1.5488 33 1 7.0479 -3.4004 0.1232 34 1 7.6148 -4.7211 -0.9271 35 1 6.0588 -3.7873 -3.4767 36 1 6.2773 -5.4414 -2.8567 37 1 3.8228 -5.6625 -2.5818 38 1 3.6044 -4.0084 -3.2018 39 1 2.2698 -6.5426 -6.9317 40 1 1.6576 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:52 Heat of formation + Delta-G solvation = -6.558531 kcal Electronic energy + Delta-G solvation = -19601.240349 eV Core-core repulsion = 16633.590721 eV Total energy + Delta-G solvation = -2967.649628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.78003 -37.26256 -36.60364 -33.83256 -32.69836 -32.11372 -30.49478 -28.98213 -26.95211 -25.52944 -24.70293 -22.47562 -21.04512 -20.65339 -19.78043 -17.02789 -16.53619 -16.10913 -15.47726 -15.26501 -14.40408 -14.09248 -14.06261 -13.81151 -13.68258 -13.05483 -13.00142 -12.69527 -12.57505 -12.50858 -12.34657 -11.94887 -11.68746 -11.45465 -11.41811 -11.36397 -11.27701 -10.88217 -10.68460 -10.40355 -9.83116 -9.59366 -9.43788 -9.04425 -8.97797 -8.61446 -8.40009 -7.98255 -5.91680 -3.87226 1.00247 1.15671 2.03504 3.40889 3.43287 3.46394 3.52558 4.44016 4.57803 4.61959 4.64553 4.76538 5.06896 5.12054 5.24118 5.32853 5.40012 5.44229 5.45133 5.46781 5.56738 5.64362 5.73843 5.82176 5.86798 6.03534 6.04170 6.23283 6.27424 6.33051 6.41043 6.56762 6.68843 6.76168 7.14300 7.34447 7.56773 7.69536 7.77664 7.97396 8.69296 9.14905 9.72746 11.22360 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.005370 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.821217 B = 5212.951027 C = 6706.201589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.114 4.114 4 C -0.107 4.107 5 C -0.038 4.038 6 Cl -0.073 7.073 7 C -0.059 4.059 8 C 0.093 3.907 9 N -0.668 5.668 10 C 0.081 3.919 11 H 0.073 0.927 12 C -0.180 4.180 13 C -0.089 4.089 14 C -0.006 4.006 15 C -0.515 4.515 16 H 0.068 0.932 17 C 0.063 3.937 18 N -0.910 5.910 19 Si 0.882 3.118 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.266 1.266 23 C -0.091 4.091 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.340 0.660 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.006 0.994 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 15.110 18.230 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.133 4.133 4 C -0.126 4.126 5 C -0.065 4.065 6 Cl -0.044 7.044 7 C -0.060 4.060 8 C -0.036 4.036 9 N -0.300 5.300 10 C -0.028 4.028 11 H 0.091 0.909 12 C -0.239 4.239 13 C -0.127 4.127 14 C -0.044 4.044 15 C -0.553 4.553 16 H 0.086 0.914 17 C -0.137 4.137 18 N -0.550 5.550 19 Si 0.710 3.290 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.190 1.190 23 C -0.110 4.110 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.159 0.841 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.692 14.746 17.844 23.159 hybrid contribution 0.131 0.329 0.753 0.832 sum -0.561 15.075 18.597 23.946 Atomic orbital electron populations 1.20818 0.90742 1.03316 1.02390 1.20022 0.96511 0.92965 0.98563 1.20947 0.93216 0.97907 1.01215 1.20965 0.94304 0.96602 1.00696 1.20808 0.84244 0.94800 1.06627 1.98358 1.10377 1.98780 1.96897 1.19743 0.93870 0.93747 0.98655 1.20942 0.97480 0.93426 0.91748 1.60654 1.41175 1.05086 1.23077 1.21785 0.90599 0.90906 0.99513 0.90902 1.22508 0.98960 1.02108 1.00302 1.21446 1.00206 0.98991 0.92102 1.19472 0.92676 0.96211 0.96010 1.21272 0.95074 1.41420 0.97543 0.91417 1.25025 0.99070 0.94893 0.94689 1.69940 1.27459 1.44874 1.12754 0.86734 0.83799 0.77608 0.80861 1.20411 1.21845 1.19027 1.20961 0.92559 0.98255 0.99234 0.91020 0.91347 0.91035 0.85345 0.85134 0.94008 0.89895 0.84100 0.92701 0.93608 0.92071 0.92906 0.92788 0.97520 0.95492 0.93019 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.08 -0.87 5.88 -104.62 -0.62 -1.48 16 3 C -0.11 -1.14 9.70 -39.59 -0.38 -1.52 16 4 C -0.11 -1.14 9.83 -39.55 -0.39 -1.53 16 5 C -0.04 -0.46 6.23 -39.49 -0.25 -0.71 16 6 Cl -0.07 -0.85 26.41 -51.86 -1.37 -2.22 16 7 C -0.06 -0.77 5.43 -104.59 -0.57 -1.34 16 8 C 0.09 1.26 5.04 -4.97 -0.03 1.23 16 9 N -0.67 -10.68 5.69 -108.00 -0.61 -11.29 16 10 C 0.08 1.32 2.59 -67.72 -0.18 1.15 16 11 H 0.07 1.18 7.80 -51.93 -0.40 0.78 16 12 C -0.18 -2.43 9.16 37.16 0.34 -2.09 16 13 C -0.09 -1.82 4.83 -26.73 -0.13 -1.95 16 14 C -0.01 -0.16 3.93 -27.88 -0.11 -0.27 16 15 C -0.51 -15.25 9.66 -34.44 -0.33 -15.58 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -29.03 13.96 55.43 0.77 -28.26 16 19 Si 0.88 22.67 27.47 -169.99 -4.67 18.00 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 23 C -0.09 -1.13 9.32 -39.59 -0.37 -1.50 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.04 0.53 6.87 -51.93 -0.36 0.17 16 30 H 0.08 1.11 7.86 -51.93 -0.41 0.70 16 31 H 0.34 5.29 7.06 -39.29 -0.28 5.01 16 32 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 33 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.01 0.16 7.20 -51.93 -0.37 -0.21 16 38 H 0.03 0.68 7.18 -51.93 -0.37 0.31 16 39 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 40 H 0.13 1.55 8.00 -52.49 -0.42 1.13 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -32.16 340.07 -9.88 -42.04 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.39 Total: 0.99 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -2.74 Total: -24.38 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.16 Total: -39.55 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.67 Total: 18.00 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.37 Total: -2.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.16 -9.88 -42.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.479 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds