Wall clock time and date at job start Tue Mar 31 2020 05:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21315 * 119.99786 * 2 1 4 4 C 1.46761 * 120.00174 * 179.97438 * 2 1 3 5 5 C 1.40119 * 120.08795 * 180.02562 * 4 2 1 6 6 C 1.36546 * 119.90340 * 179.97438 * 5 4 2 7 7 C 1.39354 * 120.09411 * 0.02562 * 6 5 4 8 8 N 1.38874 * 119.90760 * 179.97438 * 7 6 5 9 9 C 1.38733 * 119.99556 * 194.51366 * 8 7 6 10 10 C 1.38786 * 120.29453 * 254.12236 * 9 8 7 11 11 C 1.38137 * 120.02439 * 180.30051 * 10 9 8 12 12 C 1.38922 * 120.62946 * 359.69787 * 11 10 9 13 13 C 1.36431 * 120.60197 * 359.97438 * 12 11 10 14 14 C 1.40746 * 119.95308 * 0.02945 * 13 12 11 15 15 C 1.41017 * 120.30807 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99771 * 207.41014 * 15 14 13 17 17 C 1.39934 * 119.99786 * 27.40795 * 15 14 13 18 18 N 1.30873 * 119.99715 * 203.96172 * 17 15 14 19 19 Si 1.86802 * 120.00128 * 23.96749 * 17 15 14 20 20 H 1.48501 * 109.46969 * 263.25309 * 19 17 15 21 21 H 1.48495 * 109.47113 * 23.25255 * 19 17 15 22 22 H 1.48496 * 109.47078 * 143.25675 * 19 17 15 23 23 C 1.39350 * 120.18217 * 0.24738 * 7 6 5 24 24 C 1.36547 * 120.09131 * 359.45324 * 23 7 6 25 25 H 1.09005 * 109.46987 * 240.00208 * 1 2 3 26 26 H 1.08991 * 109.47380 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47104 * 120.00667 * 1 2 3 28 28 H 1.07990 * 120.04796 * 359.95764 * 5 4 2 29 29 H 1.07999 * 119.95203 * 179.97438 * 6 5 4 30 30 H 0.96997 * 119.99947 * 14.50649 * 8 7 6 31 31 H 1.07998 * 119.99229 * 0.02562 * 10 9 8 32 32 H 1.07999 * 119.68395 * 179.71276 * 11 10 9 33 33 H 1.08002 * 119.69812 * 180.02562 * 12 11 10 34 34 H 1.07998 * 120.02242 * 180.02562 * 13 12 11 35 35 H 0.96996 * 119.99925 * 355.06379 * 18 17 15 36 36 H 1.07999 * 119.95193 * 179.70468 * 23 7 6 37 37 H 1.08002 * 120.04625 * 180.29433 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2409 -1.2710 0.0006 5 6 3.6421 -1.2731 0.0011 6 6 4.3210 -2.4578 0.0022 7 6 3.6224 -3.6635 0.0022 8 7 4.3168 -4.8662 0.0027 9 6 3.6565 -6.0485 -0.2984 10 6 3.3520 -6.9559 0.7067 11 6 2.6999 -8.1343 0.3997 12 6 2.3369 -8.4219 -0.9101 13 6 2.6176 -7.5452 -1.9171 14 6 3.2813 -6.3372 -1.6324 15 6 3.5756 -5.4258 -2.6675 16 1 4.4199 -4.7587 -2.5757 17 6 2.7736 -5.3860 -3.8136 18 7 3.2611 -4.9260 -4.9376 19 14 1.0073 -5.9893 -3.7390 20 1 0.9430 -7.3931 -4.2190 21 1 0.5201 -5.9224 -2.3378 22 1 0.1546 -5.1320 -4.6010 23 6 2.2289 -3.6658 -0.0041 24 6 1.5423 -2.4855 0.0010 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 4.1842 -0.3391 0.0004 29 1 5.4010 -2.4603 0.0022 30 1 5.2635 -4.8794 0.2135 31 1 3.6290 -6.7427 1.7285 32 1 2.4698 -8.8386 1.1854 33 1 1.8271 -9.3476 -1.1331 34 1 2.3307 -7.7781 -2.9319 35 1 4.1535 -4.5466 -4.9600 36 1 1.6912 -4.6024 -0.0089 37 1 0.4623 -2.4882 0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173897652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:03 Heat of formation + Delta-G solvation = 1.555799 kcal Electronic energy + Delta-G solvation = -21187.956853 eV Core-core repulsion = 18087.258844 eV Total energy + Delta-G solvation = -3100.698009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73156 -38.71676 -37.45632 -34.64094 -33.89341 -31.36987 -30.38167 -30.17492 -29.25228 -27.40037 -24.85215 -22.80593 -22.30925 -21.46779 -20.12737 -19.37593 -18.29117 -17.19054 -16.63466 -16.01738 -15.09578 -14.69457 -14.65015 -14.55256 -14.09843 -13.95467 -13.50792 -13.15434 -12.90470 -12.77610 -12.41694 -12.35667 -12.21179 -11.93351 -11.88377 -11.50085 -11.08995 -10.77722 -10.60948 -10.44488 -10.15839 -9.63704 -9.60503 -9.39630 -9.10322 -8.62387 -7.91066 -7.89712 -7.45033 -6.84313 -4.68055 1.25926 1.97459 2.37159 2.55262 2.91559 3.09914 3.25821 3.41946 3.89169 4.12164 4.37468 4.39768 4.49982 5.17038 5.20667 5.30664 5.40712 5.53335 5.62415 5.77385 5.85653 5.94993 5.97189 6.03185 6.16855 6.26440 6.44893 6.52589 6.74279 6.80653 6.84866 6.89753 7.02269 7.23679 7.33083 7.42047 7.49698 7.66046 7.78351 7.91714 8.02073 8.19368 8.32399 8.48374 8.69028 9.82629 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.006331 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.995876 B = 4421.348259 C = 5100.656712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.402 3.598 3 O -0.488 6.488 4 C -0.259 4.259 5 C -0.011 4.011 6 C -0.224 4.224 7 C 0.280 3.720 8 N -0.653 5.653 9 C -0.007 4.007 10 C -0.069 4.069 11 C -0.250 4.250 12 C -0.070 4.070 13 C -0.232 4.232 14 C 0.099 3.901 15 C -0.493 4.493 16 H 0.078 0.922 17 C 0.046 3.954 18 N -0.799 5.799 19 Si 1.067 2.933 20 H -0.276 1.276 21 H -0.260 1.260 22 H -0.287 1.287 23 C -0.186 4.186 24 C -0.026 4.026 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.393 0.607 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.289 0.711 36 H 0.129 0.871 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 1.538 7.604 8.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.284 3.716 3 O -0.367 6.367 4 C -0.262 4.262 5 C -0.030 4.030 6 C -0.246 4.246 7 C 0.172 3.828 8 N -0.270 5.270 9 C -0.100 4.100 10 C -0.089 4.089 11 C -0.270 4.270 12 C -0.089 4.089 13 C -0.252 4.252 14 C 0.094 3.906 15 C -0.520 4.520 16 H 0.096 0.904 17 C -0.176 4.176 18 N -0.420 5.420 19 Si 0.892 3.108 20 H -0.203 1.203 21 H -0.184 1.184 22 H -0.214 1.214 23 C -0.209 4.209 24 C -0.045 4.045 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.228 0.772 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.147 0.853 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.597 1.707 6.547 8.180 hybrid contribution 1.945 0.043 0.754 2.087 sum -2.652 1.750 7.301 7.962 Atomic orbital electron populations 1.22231 0.94856 1.04250 1.04345 1.22244 0.91173 0.87880 0.70296 1.90482 1.72284 1.34661 1.39284 1.19969 0.94283 0.94042 1.17939 1.20692 0.93059 0.97377 0.91904 1.20284 0.99401 0.91220 1.13730 1.18220 0.91739 0.85842 0.86985 1.41251 1.10278 1.03025 1.72486 1.17254 1.12020 0.88651 0.92089 1.20819 0.97094 0.94419 0.96552 1.20204 1.11508 0.99425 0.95821 1.20423 0.97595 0.97596 0.93260 1.20733 1.10309 0.96099 0.98055 1.17863 0.89808 0.91760 0.91170 1.20480 1.12441 1.17924 1.01182 0.90356 1.27324 1.06318 0.93443 0.90537 1.70541 1.19653 1.25687 1.26153 0.83664 0.72823 0.76448 0.77839 1.20284 1.18401 1.21383 1.20478 0.92594 0.98783 1.09010 1.20852 0.99199 0.91192 0.93303 0.89223 0.90448 0.89048 0.85973 0.86410 0.77187 0.88712 0.88691 0.88685 0.87854 0.89974 0.85315 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.26 8.92 36.01 0.32 -1.94 16 2 C 0.40 6.30 7.21 -30.86 -0.22 6.08 16 3 O -0.49 -9.03 17.07 5.53 0.09 -8.93 16 4 C -0.26 -4.33 5.87 -105.05 -0.62 -4.94 16 5 C -0.01 -0.19 9.54 -39.49 -0.38 -0.57 16 6 C -0.22 -3.82 9.84 -39.78 -0.39 -4.21 16 7 C 0.28 5.21 5.99 -83.84 -0.50 4.71 16 8 N -0.65 -12.16 4.71 -8.03 -0.04 -12.19 16 9 C -0.01 -0.14 4.47 -83.27 -0.37 -0.51 16 10 C -0.07 -1.33 9.96 -39.42 -0.39 -1.72 16 11 C -0.25 -4.74 10.03 -39.37 -0.40 -5.14 16 12 C -0.07 -1.40 9.96 -39.98 -0.40 -1.80 16 13 C -0.23 -5.17 7.32 -39.29 -0.29 -5.46 16 14 C 0.10 2.28 5.04 -106.63 -0.54 1.75 16 15 C -0.49 -12.24 8.51 -37.89 -0.32 -12.57 16 16 H 0.08 2.07 7.79 -52.49 -0.41 1.66 16 17 C 0.05 1.14 5.32 -17.33 -0.09 1.05 16 18 N -0.80 -20.61 13.66 55.55 0.76 -19.85 16 19 Si 1.07 23.05 25.04 -169.99 -4.26 18.79 16 20 H -0.28 -5.69 6.70 56.52 0.38 -5.31 16 21 H -0.26 -5.47 7.04 56.52 0.40 -5.08 16 22 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.19 -3.48 9.19 -39.78 -0.37 -3.84 16 24 C -0.03 -0.43 9.42 -39.49 -0.37 -0.80 16 25 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 27 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 28 H 0.12 1.96 7.64 -52.49 -0.40 1.56 16 29 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.39 6.43 8.85 -40.82 -0.36 6.07 16 31 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.09 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.10 2.31 4.86 -52.49 -0.26 2.05 16 35 H 0.29 7.31 8.73 -40.82 -0.36 6.95 16 36 H 0.13 2.56 7.05 -52.49 -0.37 2.19 16 37 H 0.12 1.61 7.03 -52.49 -0.37 1.24 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -27.13 316.39 -8.29 -35.42 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.30 Total: 11.91 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: -5.32 Total: -29.91 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.72 Total: -32.04 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.26 Total: 18.79 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.13 -8.29 -35.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173897652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.978 kcal (2) G-P(sol) polarization free energy of solvation -27.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds