Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21251 * 120.00167 * 2 1 4 4 C 1.47191 * 119.99696 * 180.02562 * 2 1 3 5 5 C 1.39902 * 120.13445 * 0.02562 * 4 2 1 6 6 C 1.37925 * 119.98860 * 179.97438 * 5 4 2 7 7 C 1.38278 * 120.26189 * 359.72875 * 6 5 4 8 8 C 1.39086 * 120.26488 * 0.55210 * 7 6 5 9 9 N 1.39623 * 119.99487 * 179.72454 * 8 7 6 10 10 C 1.38691 * 119.99771 * 4.12678 * 9 8 7 11 11 C 1.38815 * 120.29377 * 256.11909 * 10 9 8 12 12 C 1.38114 * 120.02065 * 180.27621 * 11 10 9 13 13 C 1.38931 * 120.63206 * 359.74000 * 12 11 10 14 14 C 1.36427 * 120.61073 * 359.97438 * 13 12 11 15 15 C 1.40741 * 119.94790 * 0.02562 * 14 13 12 16 16 C 1.41011 * 120.31013 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00583 * 154.33066 * 16 15 14 18 18 C 1.39915 * 119.99931 * 334.32728 * 16 15 14 19 19 N 1.30887 * 120.00333 * 329.30964 * 18 16 15 20 20 Si 1.86805 * 119.99723 * 149.30324 * 18 16 15 21 21 H 1.48508 * 109.46660 * 180.02562 * 20 18 16 22 22 H 1.48492 * 109.47154 * 300.00038 * 20 18 16 23 23 H 1.48496 * 109.47029 * 60.00685 * 20 18 16 24 24 C 1.38675 * 120.00943 * 359.44496 * 8 7 6 25 25 H 1.09003 * 109.46901 * 240.00357 * 1 2 3 26 26 H 1.09002 * 109.46899 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47570 * 119.99556 * 1 2 3 28 28 H 1.08001 * 120.00962 * 359.96294 * 5 4 2 29 29 H 1.08000 * 119.87341 * 180.02562 * 6 5 4 30 30 H 1.07998 * 119.86472 * 180.29288 * 7 6 5 31 31 H 0.97000 * 120.00464 * 184.12427 * 9 8 7 32 32 H 1.08000 * 119.99283 * 0.02562 * 11 10 9 33 33 H 1.08003 * 119.68572 * 179.75987 * 12 11 10 34 34 H 1.07999 * 119.69862 * 179.97438 * 13 12 11 35 35 H 1.08002 * 120.02933 * 180.02562 * 14 13 12 36 36 H 0.97001 * 119.99424 * 352.86048 * 19 18 16 37 37 H 1.08003 * 120.12956 * 180.24899 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5462 -2.4879 -0.0017 6 6 2.2388 -3.6807 -0.0027 7 6 3.6215 -3.6836 -0.0084 8 6 4.3250 -2.4838 -0.0015 9 7 5.7212 -2.4933 -0.0014 10 6 6.4065 -3.6955 -0.0947 11 6 7.0018 -4.2512 1.0295 12 6 7.6876 -5.4458 0.9290 13 6 7.7855 -6.1055 -0.2897 14 6 7.2054 -5.5856 -1.4097 15 6 6.5004 -4.3697 -1.3359 16 6 5.8983 -3.8251 -2.4888 17 1 5.0480 -3.1659 -2.3940 18 6 6.4024 -4.1385 -3.7558 19 7 7.6776 -4.3908 -3.9088 20 14 5.2554 -4.1971 -5.2291 21 1 6.0303 -4.5501 -6.4458 22 1 4.2045 -5.2204 -4.9978 23 1 4.6199 -2.8679 -5.4147 24 6 3.6400 -1.2780 -0.0005 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3634 -0.5137 -0.8900 28 1 0.4662 -2.4906 -0.0015 29 1 1.6990 -4.6161 -0.0040 30 1 4.1573 -4.6212 -0.0140 31 1 6.2120 -1.6591 0.0638 32 1 6.9321 -3.7473 1.9822 33 1 8.1521 -5.8713 1.8063 34 1 8.3259 -7.0386 -0.3512 35 1 7.2870 -6.1066 -2.3522 36 1 8.2901 -4.2602 -3.1680 37 1 4.1843 -0.3452 0.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173901386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = -12.839648 kcal Electronic energy + Delta-G solvation = -20989.935705 eV Core-core repulsion = 17888.613462 eV Total energy + Delta-G solvation = -3101.322242 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09833 -40.17823 -38.90124 -36.17256 -35.73080 -32.44422 -31.80848 -31.28775 -30.17361 -28.81298 -26.80322 -24.72168 -23.19871 -22.89721 -22.36261 -20.46141 -19.73409 -18.39890 -17.91567 -16.85027 -16.55805 -16.33768 -16.12346 -16.08530 -15.91722 -15.61248 -14.89228 -14.52771 -14.37751 -14.25085 -13.92290 -13.78509 -13.20583 -13.04191 -12.95847 -12.75008 -12.62675 -12.42391 -12.11581 -12.05847 -11.91296 -11.58580 -11.07257 -10.76959 -10.73172 -9.87792 -9.57744 -9.55152 -9.17324 -8.27052 -6.41306 -0.20948 0.65238 0.85688 0.91970 1.45691 1.56845 1.58749 1.73565 2.27035 2.60552 2.72247 3.02693 3.23389 3.48757 4.00489 4.12545 4.28748 4.32946 4.41230 4.46960 4.53764 4.60569 4.74605 4.75614 4.87405 4.97476 4.98486 5.17721 5.22191 5.36926 5.45435 5.46212 5.59682 5.61867 5.77567 5.88162 5.98635 6.00753 6.19773 6.33005 6.57848 6.62841 6.77943 6.91142 7.15261 7.96896 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014972 B = 0.005994 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.745347 B = 4670.056485 C = 5791.519424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.396 3.604 3 O -0.510 6.510 4 C -0.145 4.145 5 C -0.122 4.122 6 C -0.089 4.089 7 C -0.163 4.163 8 C 0.205 3.795 9 N -0.671 5.671 10 C -0.002 4.002 11 C -0.082 4.082 12 C -0.245 4.245 13 C -0.085 4.085 14 C -0.231 4.231 15 C 0.081 3.919 16 C -0.528 4.528 17 H 0.067 0.933 18 C 0.011 3.989 19 N -0.803 5.803 20 Si 1.100 2.900 21 H -0.270 1.270 22 H -0.261 1.261 23 H -0.266 1.266 24 C -0.167 4.167 25 H 0.121 0.879 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.171 0.829 29 H 0.151 0.849 30 H 0.101 0.899 31 H 0.395 0.605 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.283 0.717 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 1.494 5.413 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.278 3.722 3 O -0.390 6.390 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.108 4.108 7 C -0.186 4.186 8 C 0.102 3.898 9 N -0.292 5.292 10 C -0.096 4.096 11 C -0.102 4.102 12 C -0.265 4.265 13 C -0.104 4.104 14 C -0.251 4.251 15 C 0.077 3.923 16 C -0.555 4.555 17 H 0.085 0.915 18 C -0.207 4.207 19 N -0.425 5.425 20 Si 0.918 3.082 21 H -0.194 1.194 22 H -0.185 1.185 23 H -0.190 1.190 24 C -0.190 4.190 25 H 0.139 0.861 26 H 0.104 0.896 27 H 0.136 0.864 28 H 0.188 0.812 29 H 0.169 0.831 30 H 0.119 0.881 31 H 0.230 0.770 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.469 1.514 3.785 13.119 hybrid contribution 1.260 0.561 1.569 2.089 sum -11.209 2.075 5.355 12.595 Atomic orbital electron populations 1.22262 0.89470 1.05909 1.06882 1.23241 0.93832 0.86378 0.68751 1.90499 1.73698 1.35703 1.39053 1.20454 0.92933 0.96146 1.05155 1.21455 1.01310 0.89686 1.01784 1.21196 0.92316 0.99728 0.97536 1.21009 0.95626 0.96153 1.05847 1.18030 0.84056 0.93867 0.93895 1.41175 1.01864 1.06500 1.79707 1.17427 1.07699 0.90948 0.93538 1.21109 0.97390 0.95392 0.96273 1.20550 1.09726 0.98759 0.97468 1.20693 0.97819 0.98864 0.92982 1.20795 1.08462 0.97870 0.97947 1.18072 0.90254 0.91114 0.92909 1.20412 1.15070 1.27636 0.92429 0.91457 1.28191 0.97967 0.89837 1.04723 1.70594 1.04109 1.31318 1.36481 0.83215 0.74139 0.78889 0.71908 1.19433 1.18507 1.19049 1.20800 0.94705 0.95731 1.07778 0.86067 0.89608 0.86418 0.81154 0.83095 0.88081 0.76999 0.87114 0.86065 0.86776 0.89596 0.90528 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 8.93 71.24 0.64 -2.08 16 2 C 0.40 10.55 7.23 28.04 0.20 10.76 16 3 O -0.51 -17.82 17.08 -2.94 -0.05 -17.87 16 4 C -0.15 -4.32 5.87 -20.17 -0.12 -4.44 16 5 C -0.12 -2.96 9.47 22.60 0.21 -2.74 16 6 C -0.09 -2.55 10.02 22.21 0.22 -2.32 16 7 C -0.16 -6.18 8.87 22.48 0.20 -5.98 16 8 C 0.20 8.09 5.40 38.21 0.21 8.30 16 9 N -0.67 -28.16 4.85 -179.47 -0.87 -29.03 16 10 C 0.00 -0.11 4.58 39.02 0.18 0.07 16 11 C -0.08 -3.43 9.96 22.38 0.22 -3.21 16 12 C -0.25 -9.95 10.03 22.41 0.22 -9.72 16 13 C -0.09 -3.69 9.96 22.01 0.22 -3.47 16 14 C -0.23 -11.42 8.12 22.46 0.18 -11.24 16 15 C 0.08 4.09 4.74 -21.17 -0.10 3.99 16 16 C -0.53 -27.49 8.30 23.36 0.19 -27.29 16 17 H 0.07 3.60 6.59 -2.91 -0.02 3.58 16 18 C 0.01 0.57 4.79 85.24 0.41 0.98 16 19 N -0.80 -42.47 12.38 21.82 0.27 -42.20 16 20 Si 1.10 43.52 30.03 68.60 2.06 45.57 16 21 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 24 C -0.17 -6.08 9.45 22.73 0.21 -5.87 16 25 H 0.12 1.12 8.09 -2.39 -0.02 1.10 16 26 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 27 H 0.12 1.20 8.08 -2.39 -0.02 1.18 16 28 H 0.17 2.40 7.04 -2.91 -0.02 2.38 16 29 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.10 4.33 6.70 -2.91 -0.02 4.31 16 31 H 0.39 15.53 8.83 -92.71 -0.82 14.71 16 32 H 0.11 4.16 8.06 -2.91 -0.02 4.13 16 33 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 34 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.09 4.48 6.72 -2.91 -0.02 4.46 16 36 H 0.28 15.57 7.23 -92.71 -0.67 14.90 16 37 H 0.11 4.22 7.65 -2.91 -0.02 4.19 16 Total: -1.00 -63.10 318.64 5.10 -58.00 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: 0.38 Total: 39.81 kcal Atomic # 6 Polarization: -57.58 SS G_CDS: 3.31 Total: -54.28 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -0.60 Total: -71.23 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.05 Total: -17.87 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.06 Total: 45.57 kcal Total: -63.10 5.10 -58.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173901386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.162 kcal (2) G-P(sol) polarization free energy of solvation -63.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds