Wall clock time and date at job start Tue Mar 31 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86795 * 120.00412 * 2 1 4 4 H 1.48501 * 109.47103 * 264.99479 * 3 2 1 5 5 H 1.48499 * 109.47019 * 24.99268 * 3 2 1 6 6 H 1.48497 * 109.47274 * 144.99505 * 3 2 1 7 7 C 1.39856 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00469 * 147.72730 * 7 2 1 9 9 C 1.41105 * 119.99507 * 327.72506 * 7 2 1 10 10 C 1.40913 * 120.14969 * 156.90527 * 9 7 2 11 11 C 1.36306 * 119.83710 * 180.02562 * 10 9 7 12 12 C 1.39607 * 120.16098 * 0.02562 * 11 10 9 13 13 N 1.38804 * 119.84676 * 179.70034 * 12 11 10 14 14 C 1.39650 * 120.00398 * 157.24937 * 13 12 11 15 15 C 1.39335 * 120.87462 * 327.08127 * 14 13 12 16 16 N 1.32254 * 118.99933 * 179.78618 * 15 14 13 17 17 C 1.31808 * 120.90217 * 0.48046 * 16 15 14 18 18 C 1.50697 * 119.02756 * 179.75078 * 17 16 15 19 19 C 1.53003 * 117.49602 * 8.64129 * 18 17 16 20 20 C 1.52996 * 60.00077 * 252.51093 * 19 18 17 21 21 N 1.31809 * 121.94964 * 359.76913 * 17 16 15 22 22 C 1.32254 * 120.90133 * 359.97438 * 21 17 16 23 23 C 1.39606 * 120.30788 * 359.97067 * 12 11 10 24 24 C 1.36303 * 120.16032 * 0.02562 * 23 12 11 25 25 H 0.97001 * 120.00120 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.07527 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.91995 * 179.97438 * 11 10 9 28 28 H 0.97001 * 119.99729 * 337.24752 * 13 12 11 29 29 H 1.07999 * 120.50192 * 0.02562 * 15 14 13 30 30 H 1.08995 * 115.55021 * 154.35116 * 18 17 16 31 31 H 1.08998 * 117.50140 * 0.02562 * 19 18 17 32 32 H 1.09000 * 117.49815 * 145.02465 * 19 18 17 33 33 H 1.08996 * 117.50231 * 252.51609 * 20 19 18 34 34 H 1.09006 * 117.49951 * 107.48636 * 20 19 18 35 35 H 1.07997 * 120.49708 * 179.97438 * 22 21 17 36 36 H 1.08003 * 119.91918 * 179.97438 * 23 12 11 37 37 H 1.08006 * 120.08036 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.5965 1.9852 -1.3947 5 1 1.3917 2.6808 0.5915 6 1 3.4838 1.4729 0.8031 7 6 2.0083 -1.2112 -0.0005 8 1 2.9632 -1.2833 -0.5000 9 6 1.4661 -2.3390 0.6515 10 6 1.8688 -3.6358 0.2749 11 6 1.3406 -4.7208 0.9087 12 6 0.4025 -4.5497 1.9283 13 7 -0.1358 -5.6593 2.5651 14 6 -0.6774 -5.5349 3.8463 15 6 -0.1488 -4.6263 4.7609 16 7 -0.6933 -4.5361 5.9628 17 6 -1.7147 -5.2970 6.3021 18 6 -2.2987 -5.1630 7.6848 19 6 -1.8009 -4.0056 8.5529 20 6 -1.3742 -5.4398 8.8721 21 7 -2.2401 -6.1719 5.4679 22 6 -1.7570 -6.3200 4.2457 23 6 -0.0010 -3.2678 2.3066 24 6 0.5190 -2.1739 1.6815 25 1 -0.4850 0.8400 0.0004 26 1 2.5942 -3.7696 -0.5139 27 1 1.6480 -5.7154 0.6209 28 1 -0.1359 -6.5213 2.1202 29 1 0.6904 -4.0023 4.4911 30 1 -3.3449 -5.4527 7.7833 31 1 -1.0512 -3.3409 8.1237 32 1 -2.5196 -3.5335 9.2227 33 1 -1.8123 -5.9113 9.7517 34 1 -0.3435 -5.7189 8.6529 35 1 -2.1923 -7.0392 3.5677 36 1 -0.7275 -3.1427 3.0959 37 1 0.2063 -1.1828 1.9755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174612977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:31 Heat of formation + Delta-G solvation = 96.458685 kcal Electronic energy + Delta-G solvation = -20379.605230 eV Core-core repulsion = 17315.315271 eV Total energy + Delta-G solvation = -3064.289960 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88167 -38.35940 -36.96549 -35.41650 -33.42898 -33.33971 -30.36996 -29.75037 -28.48161 -25.27460 -24.61712 -23.55485 -22.31421 -21.37561 -21.08660 -20.39266 -17.71528 -17.51452 -16.88936 -16.50359 -15.98409 -15.22198 -15.01005 -14.53817 -14.18630 -13.87595 -13.39579 -13.17120 -12.81706 -12.32661 -12.24072 -12.13778 -11.85995 -11.52629 -11.34910 -11.20651 -10.99945 -10.91133 -10.70105 -10.50834 -10.41681 -10.12274 -10.02477 -9.57762 -9.11104 -8.88747 -8.27685 -7.77072 -7.09891 -6.68809 -4.31559 1.22243 1.38113 2.67806 2.86633 3.00629 3.01962 3.15389 3.67658 3.76292 3.83293 4.12744 4.24470 4.41335 4.50409 4.85352 4.93426 5.09606 5.13347 5.27105 5.50521 5.59443 5.64551 5.81780 6.00038 6.01480 6.08032 6.18848 6.28282 6.49024 6.69072 6.77238 6.90251 7.03278 7.17383 7.34189 7.38429 7.52285 7.86997 7.96099 8.13950 8.22698 8.44319 8.45831 8.72513 8.83019 9.94916 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.003915 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.577925 B = 7149.448681 C = 8075.211459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.896 3.104 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.465 4.465 8 H 0.082 0.918 9 C 0.103 3.897 10 C -0.209 4.209 11 C -0.108 4.108 12 C 0.008 3.992 13 N -0.655 5.655 14 C 0.106 3.894 15 C 0.102 3.898 16 N -0.484 5.484 17 C 0.274 3.726 18 C -0.086 4.086 19 C -0.158 4.158 20 C -0.162 4.162 21 N -0.485 5.485 22 C 0.076 3.924 23 C -0.120 4.120 24 C -0.153 4.153 25 H 0.285 0.715 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.400 0.600 29 H 0.171 0.829 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.161 0.839 36 H 0.090 0.910 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.245 -6.888 9.167 11.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.100 0.900 9 C 0.100 3.900 10 C -0.229 4.229 11 C -0.128 4.128 12 C -0.086 4.086 13 N -0.275 5.275 14 C -0.003 4.003 15 C -0.070 4.070 16 N -0.197 5.197 17 C 0.007 3.993 18 C -0.106 4.106 19 C -0.196 4.196 20 C -0.201 4.201 21 N -0.197 5.197 22 C -0.096 4.096 23 C -0.141 4.141 24 C -0.173 4.173 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.235 0.765 29 H 0.188 0.812 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.178 0.822 36 H 0.108 0.892 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.823 -6.520 9.996 12.264 hybrid contribution 0.572 0.332 -1.339 1.493 sum -2.251 -6.188 8.658 10.877 Atomic orbital electron populations 1.69944 1.08091 1.30109 1.30932 1.25931 0.94366 1.01577 0.91633 0.86517 0.81228 0.80621 0.79663 1.19242 1.19976 1.18130 1.19456 1.05306 0.93764 1.30721 0.89966 1.17553 0.90354 0.91867 0.90190 1.20498 1.06564 0.92223 1.03590 1.19940 0.97259 0.97493 0.98154 1.17105 1.03739 0.85627 1.02131 1.41431 1.63083 1.10485 1.12548 1.19565 0.94249 0.98892 0.87544 1.23200 0.98498 0.98438 0.86904 1.67927 1.10520 1.22924 1.18372 1.21649 0.91992 0.90526 0.95178 1.20405 0.98772 1.05922 0.85477 1.22993 1.03698 0.91446 1.01443 1.22950 0.99882 0.99563 0.97690 1.67840 1.29938 1.18862 1.03070 1.22823 0.92016 1.01112 0.93600 1.20206 1.00684 0.91719 1.01486 1.20655 1.01960 0.96714 0.97973 0.90437 0.88489 0.89039 0.76509 0.81221 0.86057 0.87245 0.88611 0.88459 0.88781 0.82169 0.89204 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.05 11.84 55.54 0.66 -18.39 16 2 C 0.09 2.08 4.76 -17.34 -0.08 2.00 16 3 Si 0.90 17.70 29.66 -169.99 -5.04 12.66 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.69 8.93 -37.89 -0.34 -12.03 16 8 H 0.08 1.99 8.01 -52.49 -0.42 1.57 16 9 C 0.10 2.59 5.56 -106.79 -0.59 2.00 16 10 C -0.21 -4.76 9.74 -39.27 -0.38 -5.14 16 11 C -0.11 -2.20 9.86 -39.77 -0.39 -2.59 16 12 C 0.01 0.16 6.18 -83.68 -0.52 -0.36 16 13 N -0.66 -10.79 5.45 -8.12 -0.04 -10.84 16 14 C 0.11 1.75 5.93 -83.48 -0.49 1.25 16 15 C 0.10 1.78 8.93 -16.96 -0.15 1.63 16 16 N -0.48 -8.31 9.33 -10.55 -0.10 -8.41 16 17 C 0.27 4.44 7.31 -157.17 -1.15 3.30 16 18 C -0.09 -1.11 6.23 -91.77 -0.57 -1.68 16 19 C -0.16 -1.80 10.01 -26.73 -0.27 -2.06 16 20 C -0.16 -1.77 10.23 -26.73 -0.27 -2.04 16 21 N -0.48 -7.88 10.32 -10.55 -0.11 -7.98 16 22 C 0.08 1.15 11.26 -16.96 -0.19 0.96 16 23 C -0.12 -2.67 7.82 -39.77 -0.31 -2.98 16 24 C -0.15 -3.76 8.73 -39.27 -0.34 -4.11 16 25 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 26 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 27 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.40 5.46 8.88 -40.82 -0.36 5.10 16 29 H 0.17 3.08 6.68 -52.49 -0.35 2.73 16 30 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.11 1.41 7.53 -51.93 -0.39 1.02 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.16 1.95 8.06 -52.49 -0.42 1.52 16 36 H 0.09 1.94 6.14 -52.48 -0.32 1.62 16 37 H 0.11 2.73 6.59 -52.48 -0.35 2.38 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -26.86 318.28 -10.19 -37.04 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -4.29 Total: 12.99 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -6.06 Total: -21.86 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.41 Total: -45.63 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.04 Total: 12.66 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.86 -10.19 -37.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174612977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.504 kcal (2) G-P(sol) polarization free energy of solvation -26.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds