Wall clock time and date at job start Tue Mar 31 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38103 * 119.97412 * 2 1 4 4 C 1.38896 * 119.94153 * 180.31900 * 3 2 1 5 5 N 1.39745 * 120.06165 * 179.68626 * 4 3 2 6 6 C 1.46499 * 119.99967 * 0.02562 * 5 4 3 7 7 C 1.53002 * 109.46665 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47936 * 305.00298 * 7 6 5 9 9 C 1.53009 * 109.47020 * 65.00592 * 7 6 5 10 10 C 1.53006 * 109.46940 * 185.00106 * 7 6 5 11 11 C 1.50701 * 109.47008 * 175.00545 * 10 7 6 12 12 H 1.07998 * 120.00212 * 0.02562 * 11 10 7 13 13 C 1.37883 * 119.99737 * 180.02562 * 11 10 7 14 14 N 1.31513 * 119.99854 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99953 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46694 * 90.00474 * 15 13 11 17 17 H 1.48498 * 109.46836 * 210.00059 * 15 13 11 18 18 H 1.48497 * 109.47174 * 330.00416 * 15 13 11 19 19 C 1.38895 * 119.87636 * 359.70666 * 4 3 2 20 20 C 1.38111 * 119.93860 * 359.97438 * 19 4 3 21 21 C 1.50697 * 119.97250 * 179.97438 * 20 19 4 22 22 C 1.38383 * 119.96519 * 179.75087 * 2 1 3 23 23 Cl 1.73599 * 119.94214 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.46496 * 270.25114 * 1 2 3 25 25 H 1.08997 * 109.46956 * 30.25095 * 1 2 3 26 26 H 1.08999 * 109.46919 * 150.24809 * 1 2 3 27 27 H 1.08005 * 120.02808 * 0.05504 * 3 2 1 28 28 H 0.97005 * 119.99734 * 180.02562 * 5 4 3 29 29 H 1.08990 * 109.47602 * 299.99955 * 6 5 4 30 30 H 1.08995 * 109.46898 * 60.00905 * 6 5 4 31 31 H 1.09000 * 109.47197 * 59.99639 * 9 7 6 32 32 H 1.08995 * 109.46805 * 179.97438 * 9 7 6 33 33 H 1.09000 * 109.46716 * 299.99328 * 9 7 6 34 34 H 1.09000 * 109.46859 * 295.00284 * 10 7 6 35 35 H 1.08995 * 109.47022 * 55.00267 * 10 7 6 36 36 H 0.97002 * 120.00126 * 179.97438 * 14 13 11 37 37 H 1.07997 * 120.02980 * 180.02562 * 19 4 3 38 38 H 1.09002 * 109.47017 * 270.02620 * 21 20 19 39 39 H 1.08998 * 109.46860 * 30.02046 * 21 20 19 40 40 H 1.08994 * 109.47418 * 150.02083 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1963 0.0000 4 6 3.5859 1.1955 -0.0067 5 7 4.2866 2.4046 -0.0133 6 6 3.5562 3.6745 -0.0127 7 6 4.5524 4.8358 -0.0201 8 1 5.2405 4.7297 0.8186 9 6 5.3408 4.8230 -1.3314 10 6 3.7944 6.1588 0.1064 11 6 4.7797 7.2931 0.2224 12 1 5.8405 7.0908 0.2071 13 6 4.3269 8.5894 0.3482 14 7 5.1868 9.5793 0.4500 15 14 2.4922 8.9395 0.3740 16 1 1.9995 8.8949 1.7742 17 1 2.2372 10.2861 -0.1978 18 1 1.7816 7.9160 -0.4338 19 6 4.2772 -0.0092 -0.0072 20 6 3.5821 -1.2026 -0.0005 21 6 4.3313 -2.5102 -0.0017 22 6 2.1982 -1.1988 0.0052 23 17 1.3278 -2.7008 0.0124 24 1 -0.3632 0.0045 1.0277 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8922 -0.5100 27 1 1.6570 2.1317 0.0009 28 1 5.2567 2.4030 -0.0184 29 1 2.9250 3.7312 -0.8994 30 1 2.9345 3.7355 0.8805 31 1 4.6527 4.9291 -2.1701 32 1 6.0502 5.6505 -1.3368 33 1 5.8808 3.8805 -1.4214 34 1 3.1723 6.3068 -0.7763 35 1 3.1639 6.1328 0.9951 36 1 4.8683 10.4913 0.5381 37 1 5.3571 -0.0127 -0.0120 38 1 4.5065 -2.8276 -1.0296 39 1 5.2868 -2.3819 0.5068 40 1 3.7425 -3.2668 0.5169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181154945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:46 Heat of formation + Delta-G solvation = -27.203465 kcal Electronic energy + Delta-G solvation = -19182.906358 eV Core-core repulsion = 16214.361499 eV Total energy + Delta-G solvation = -2968.544859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.74178 -38.44022 -37.19704 -35.60539 -34.53780 -34.11055 -31.00143 -29.24191 -28.15873 -27.82480 -26.82099 -24.35140 -22.32859 -21.63174 -20.76354 -18.99518 -17.68613 -17.48886 -16.94346 -16.32267 -16.04555 -15.31330 -15.28951 -15.04460 -14.61940 -14.30436 -14.05642 -14.02235 -13.84878 -13.64493 -13.49774 -12.99334 -12.89704 -12.86907 -12.76267 -12.56836 -12.33754 -12.24037 -12.10420 -11.81096 -11.54922 -11.42088 -11.35424 -11.11545 -10.73993 -10.51451 -9.56632 -8.28352 -8.26545 -6.29330 0.38990 0.49195 1.37318 1.38982 1.40364 1.50044 2.37720 2.49570 2.76328 3.09303 3.80429 3.84775 3.99712 4.14130 4.27099 4.30845 4.40191 4.47083 4.60433 4.72660 4.77125 4.78383 4.82686 4.83790 4.86331 4.89178 5.02825 5.11792 5.22068 5.24139 5.34116 5.38055 5.40755 5.48463 5.57018 5.64379 5.69069 5.80663 6.29552 6.38138 6.78534 6.82940 7.34587 8.90020 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.003196 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.808034 B = 8757.720468 C = 9523.297978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.030 4.030 3 C -0.212 4.212 4 C 0.225 3.775 5 N -0.735 5.735 6 C 0.137 3.863 7 C -0.081 4.081 8 H 0.060 0.940 9 C -0.128 4.128 10 C -0.005 4.005 11 C -0.519 4.519 12 H 0.036 0.964 13 C 0.002 3.998 14 N -0.954 5.954 15 Si 0.946 3.054 16 H -0.269 1.269 17 H -0.288 1.288 18 H -0.244 1.244 19 C -0.204 4.204 20 C -0.030 4.030 21 C -0.117 4.117 22 C -0.118 4.118 23 Cl -0.077 7.077 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.130 0.870 28 H 0.405 0.595 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.019 0.981 36 H 0.264 0.736 37 H 0.141 0.859 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 -25.007 -1.740 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.032 4.032 3 C -0.235 4.235 4 C 0.120 3.880 5 N -0.363 5.363 6 C 0.013 3.987 7 C -0.099 4.099 8 H 0.078 0.922 9 C -0.185 4.185 10 C -0.043 4.043 11 C -0.558 4.558 12 H 0.055 0.945 13 C -0.195 4.195 14 N -0.595 5.595 15 Si 0.770 3.230 16 H -0.194 1.194 17 H -0.214 1.214 18 H -0.167 1.167 19 C -0.226 4.226 20 C -0.031 4.031 21 C -0.173 4.173 22 C -0.147 4.147 23 Cl -0.048 7.048 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.148 0.852 28 H 0.241 0.759 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.159 0.841 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.599 -24.770 -1.728 25.967 hybrid contribution -0.014 0.921 0.132 0.930 sum -7.612 -23.850 -1.597 25.086 Atomic orbital electron populations 1.20907 0.89399 1.03783 1.03398 1.19684 0.97219 0.90723 0.95553 1.20587 0.92354 0.98069 1.12464 1.18054 0.91659 0.86416 0.91920 1.44827 1.08582 1.02187 1.80676 1.21359 0.94459 0.81922 1.00972 1.21072 0.96889 0.93548 0.98439 0.92191 1.21650 0.99733 1.00630 0.96490 1.19521 0.95518 0.92649 0.96635 1.21432 0.93821 0.91621 1.48879 0.94520 1.25990 1.02789 0.96170 0.94516 1.70068 1.36640 1.00181 1.52637 0.85721 0.80137 0.77847 0.79331 1.19377 1.21442 1.16684 1.20547 1.00335 0.89642 1.12114 1.19697 0.91458 0.96450 0.95533 1.20900 1.00249 0.92675 1.03479 1.20460 0.91841 0.86419 1.15934 1.98294 1.76536 1.32571 1.97409 0.90018 0.90445 0.90581 0.85213 0.75850 0.91980 0.92343 0.93185 0.94406 0.91823 0.95929 0.96257 0.92692 0.84081 0.89890 0.89990 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 9.61 71.24 0.68 -1.42 16 2 C -0.03 -0.68 5.88 -19.86 -0.12 -0.80 16 3 C -0.21 -5.11 8.96 22.40 0.20 -4.91 16 4 C 0.23 5.44 6.65 38.19 0.25 5.70 16 5 N -0.73 -17.92 5.46 -339.40 -1.85 -19.78 16 6 C 0.14 3.84 4.30 86.38 0.37 4.21 16 7 C -0.08 -2.81 2.37 -10.79 -0.03 -2.84 16 8 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 9 C -0.13 -4.27 8.88 71.99 0.64 -3.63 16 10 C -0.01 -0.23 3.52 29.85 0.10 -0.13 16 11 C -0.52 -28.72 8.96 25.60 0.23 -28.50 16 12 H 0.04 2.23 7.30 -2.91 -0.02 2.21 16 13 C 0.00 0.09 5.47 84.66 0.46 0.55 16 14 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 15 Si 0.95 43.30 27.47 68.60 1.88 45.19 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 19 C -0.20 -4.37 9.55 22.40 0.21 -4.16 16 20 C -0.03 -0.62 5.88 -19.86 -0.12 -0.74 16 21 C -0.12 -1.79 9.61 71.23 0.68 -1.10 16 22 C -0.12 -2.61 6.31 22.34 0.14 -2.47 16 23 Cl -0.08 -1.49 25.61 -2.72 -0.07 -1.56 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 26 H 0.08 1.28 6.90 -2.39 -0.02 1.26 16 27 H 0.13 3.04 6.73 -2.91 -0.02 3.02 16 28 H 0.41 9.00 7.67 -92.70 -0.71 8.29 16 29 H 0.06 1.70 7.95 -2.39 -0.02 1.68 16 30 H 0.06 1.64 7.95 -2.39 -0.02 1.62 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.49 6.95 -2.39 -0.02 1.47 16 33 H 0.06 1.72 7.18 -2.39 -0.02 1.70 16 34 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 35 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 36 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 40 H 0.07 1.11 6.90 -2.39 -0.02 1.10 16 Total: -1.00 -63.11 334.61 4.25 -58.86 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.26 Total: 16.51 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 3.73 Total: -40.24 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -1.55 Total: -78.75 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.19 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.07 Total: -1.56 kcal Total: -63.11 4.25 -58.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181154945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.654 kcal (2) G-P(sol) polarization free energy of solvation -63.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds