Wall clock time and date at job start Tue Mar 31 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86800 * 119.99724 * 2 1 4 4 H 1.48501 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47252 * 300.00123 * 3 2 1 6 6 H 1.48499 * 109.47449 * 59.99988 * 3 2 1 7 7 C 1.39916 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99694 * 184.71720 * 7 2 1 9 9 C 1.41295 * 120.00135 * 4.44322 * 7 2 1 10 10 C 1.40639 * 120.22808 * 324.96295 * 9 7 2 11 11 C 1.38146 * 119.70876 * 179.81064 * 10 9 7 12 12 N 1.40003 * 119.90757 * 180.20818 * 11 10 9 13 13 C 1.34774 * 120.00769 * 35.44206 * 12 11 10 14 14 O 1.21295 * 119.99677 * 355.68734 * 13 12 11 15 15 C 1.50695 * 120.00473 * 175.68401 * 13 12 11 16 16 N 1.46904 * 109.47297 * 180.02562 * 15 13 12 17 17 C 1.46900 * 110.99919 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46894 * 179.97438 * 17 16 15 19 19 N 1.46903 * 109.47352 * 180.02562 * 18 17 16 20 20 C 1.39365 * 120.17621 * 0.44307 * 11 10 9 21 21 C 1.38360 * 120.47246 * 359.78351 * 20 11 10 22 22 C 1.38014 * 120.28760 * 0.02562 * 21 20 11 23 23 F 1.35098 * 120.09172 * 179.97438 * 22 21 20 24 24 H 0.97005 * 120.00444 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.14535 * 359.97438 * 10 9 7 26 26 H 0.97001 * 119.99807 * 215.44417 * 12 11 10 27 27 H 1.09001 * 109.47123 * 300.00133 * 15 13 12 28 28 H 1.08998 * 109.47255 * 60.00441 * 15 13 12 29 29 H 1.00896 * 110.99816 * 303.95740 * 16 15 13 30 30 H 1.08997 * 109.47228 * 299.99851 * 17 16 15 31 31 H 1.09000 * 109.47069 * 60.00328 * 17 16 15 32 32 H 1.09006 * 109.47211 * 300.00196 * 18 17 16 33 33 H 1.09001 * 109.47241 * 59.99821 * 18 17 16 34 34 H 1.00902 * 110.99565 * 56.04198 * 19 18 17 35 35 H 1.00897 * 111.00086 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.76322 * 179.76143 * 20 11 10 37 37 H 1.07999 * 119.85990 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7025 1.3465 -0.0006 5 1 1.8836 2.3965 -1.2126 6 1 1.8837 2.3965 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0854 -1.2132 0.0775 9 6 1.3049 -2.4336 -0.0937 10 6 0.0453 -2.5744 0.5158 11 6 -0.6346 -3.7726 0.4136 12 7 -1.8907 -3.9160 1.0151 13 6 -2.7431 -2.8727 1.0526 14 8 -2.3933 -1.7886 0.6359 15 6 -4.1306 -3.0530 1.6122 16 7 -4.8568 -1.7780 1.5410 17 6 -6.2170 -1.9161 2.0785 18 6 -6.9400 -0.5708 1.9883 19 7 -8.3000 -0.7087 2.5264 20 6 -0.0713 -4.8405 -0.2825 21 6 1.1694 -4.7117 -0.8810 22 6 1.8639 -3.5221 -0.7943 23 9 3.0754 -3.4008 -1.3797 24 1 -0.4851 0.8401 0.0004 25 1 -0.3896 -1.7486 1.0592 26 1 -2.1475 -4.7663 1.4049 27 1 -4.6619 -3.8063 1.0304 28 1 -4.0643 -3.3762 2.6510 29 1 -4.3514 -1.0469 2.0185 30 1 -6.7623 -2.6617 1.5000 31 1 -6.1655 -2.2313 3.1207 32 1 -6.3945 0.1745 2.5671 33 1 -6.9915 -0.2552 0.9462 34 1 -8.2808 -1.0621 3.4713 35 1 -8.7987 0.1670 2.4775 36 1 -0.6071 -5.7755 -0.3550 37 1 1.5968 -5.5458 -1.4176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219518521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:30 Heat of formation + Delta-G solvation = -54.014857 kcal Electronic energy + Delta-G solvation = -21448.563827 eV Core-core repulsion = 17946.979620 eV Total energy + Delta-G solvation = -3501.584207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.16177 -39.55473 -37.31320 -36.42294 -34.22250 -33.81835 -33.08110 -29.69431 -29.19059 -27.48419 -25.34844 -24.64715 -21.89338 -21.67976 -20.82872 -19.50286 -17.76777 -16.98683 -16.23827 -16.00931 -15.90283 -15.45967 -15.30127 -14.84457 -14.49346 -14.28186 -14.10658 -13.92203 -13.23923 -13.00581 -12.74873 -12.58232 -12.15201 -11.77706 -11.74483 -11.64681 -11.46912 -11.42088 -11.08515 -10.91630 -10.57619 -10.24860 -9.65384 -9.20301 -9.06651 -9.01102 -8.81925 -8.44351 -7.41180 -6.87228 -6.46714 -4.36905 2.53707 2.81755 3.11977 3.15440 3.20658 3.32925 3.52348 4.02392 4.11302 4.62563 4.68616 4.89600 4.97116 5.13071 5.30046 5.33393 5.42177 5.51849 5.75635 5.80594 5.90836 6.13063 6.40266 6.73983 6.80482 6.83940 6.96503 7.01414 7.11135 7.28404 7.30952 7.47058 7.58998 7.75720 8.06703 8.16991 8.34806 8.56152 8.88263 8.89592 8.94664 10.33570 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.016045 B = 0.004692 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.709993 B = 5966.794781 C = 7599.979502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.067 3.933 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.090 3.910 10 C -0.131 4.131 11 C 0.132 3.868 12 N -0.674 5.674 13 C 0.487 3.513 14 O -0.465 6.465 15 C 0.047 3.953 16 N -0.671 5.671 17 C 0.063 3.937 18 C 0.061 3.939 19 N -0.851 5.851 20 C -0.235 4.235 21 C -0.116 4.116 22 C -0.033 4.033 23 F -0.164 7.164 24 H 0.281 0.719 25 H 0.158 0.842 26 H 0.395 0.605 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.352 0.648 30 H 0.080 0.920 31 H 0.025 0.975 32 H 0.027 0.973 33 H 0.084 0.916 34 H 0.338 0.662 35 H 0.344 0.656 36 H 0.098 0.902 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 -3.291 6.992 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.152 4.152 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.086 3.914 10 C -0.152 4.152 11 C 0.040 3.960 12 N -0.320 5.320 13 C 0.271 3.729 14 O -0.334 6.334 15 C -0.086 4.086 16 N -0.305 5.305 17 C -0.067 4.067 18 C -0.070 4.070 19 N -0.381 5.381 20 C -0.256 4.256 21 C -0.136 4.136 22 C -0.053 4.053 23 F -0.143 7.143 24 H 0.092 0.908 25 H 0.175 0.825 26 H 0.228 0.772 27 H 0.116 0.884 28 H 0.071 0.929 29 H 0.172 0.828 30 H 0.099 0.901 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.116 0.884 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.992 -2.882 5.414 13.469 hybrid contribution 0.830 0.795 1.611 1.979 sum -11.162 -2.086 7.025 13.352 Atomic orbital electron populations 1.69864 1.06502 1.28939 1.33957 1.25942 0.95103 1.01051 0.93111 0.86180 0.80671 0.80978 0.78405 1.18552 1.19890 1.20008 1.19429 0.94907 0.89798 1.44609 0.90261 1.17576 0.92619 0.91407 0.89794 1.21670 0.95055 0.96348 1.02150 1.17670 0.84401 0.96211 0.97748 1.43339 1.15354 1.14251 1.59046 1.20533 0.86223 0.85339 0.80814 1.90960 1.75799 1.24004 1.42669 1.21750 0.93184 0.93662 1.00023 1.59974 1.02442 1.06413 1.61659 1.21899 0.89477 0.97995 0.97316 1.21733 0.88064 0.95993 1.01209 1.58629 1.16856 1.34969 1.27659 1.19905 0.98226 0.98399 1.09100 1.20252 0.95562 0.95757 1.01998 1.18039 0.84482 0.97355 1.05431 1.91266 1.43068 1.96822 1.83128 0.90795 0.82515 0.77156 0.88418 0.92851 0.82793 0.90136 0.95693 0.95453 0.89759 0.85037 0.84328 0.88355 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.79 10.55 55.55 0.59 -20.20 16 2 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 3 Si 0.91 19.72 29.56 -169.99 -5.03 14.69 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.46 -12.72 8.69 -37.79 -0.33 -13.05 16 8 H 0.08 2.17 7.84 -52.48 -0.41 1.76 16 9 C 0.09 2.49 5.55 -106.78 -0.59 1.89 16 10 C -0.13 -3.43 7.30 -38.71 -0.28 -3.71 16 11 C 0.13 2.96 6.29 -83.74 -0.53 2.44 16 12 N -0.67 -11.84 5.34 -9.90 -0.05 -11.89 16 13 C 0.49 8.78 7.70 -10.99 -0.08 8.69 16 14 O -0.46 -10.74 13.59 5.54 0.08 -10.66 16 15 C 0.05 0.59 6.17 -4.98 -0.03 0.56 16 16 N -0.67 -8.90 6.13 -115.06 -0.70 -9.60 16 17 C 0.06 0.65 5.95 -3.83 -0.02 0.63 16 18 C 0.06 0.59 7.05 -3.82 -0.03 0.57 16 19 N -0.85 -6.88 9.62 -10.37 -0.10 -6.98 16 20 C -0.23 -4.99 9.96 -39.12 -0.39 -5.38 16 21 C -0.12 -2.64 10.00 -39.62 -0.40 -3.03 16 22 C -0.03 -0.85 7.31 -38.62 -0.28 -1.13 16 23 F -0.16 -4.24 16.82 2.25 0.04 -4.20 16 24 H 0.28 7.09 8.30 -40.82 -0.34 6.75 16 25 H 0.16 4.36 4.35 -52.49 -0.23 4.13 16 26 H 0.40 5.18 8.82 -40.82 -0.36 4.82 16 27 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.35 4.94 8.43 -39.29 -0.33 4.61 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.34 2.24 8.99 -39.29 -0.35 1.89 16 35 H 0.34 2.26 9.08 -39.29 -0.36 1.90 16 36 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 321.08 15.07 4.84 4.84 Total: -1.00 -31.74 321.08 -7.96 -39.70 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -4.56 Total: 14.18 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -3.06 Total: -9.86 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.27 Total: -48.68 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.04 Total: -4.20 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.74 -7.96 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219518521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.316 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds