Wall clock time and date at job start Tue Mar 31 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86800 * 119.99724 * 2 1 4 4 H 1.48501 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47252 * 300.00123 * 3 2 1 6 6 H 1.48499 * 109.47449 * 59.99988 * 3 2 1 7 7 C 1.39916 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99694 * 184.71720 * 7 2 1 9 9 C 1.41295 * 120.00135 * 4.44322 * 7 2 1 10 10 C 1.40639 * 120.22808 * 324.96295 * 9 7 2 11 11 C 1.38146 * 119.70876 * 179.81064 * 10 9 7 12 12 N 1.40003 * 119.90757 * 180.20818 * 11 10 9 13 13 C 1.34774 * 120.00769 * 35.44206 * 12 11 10 14 14 O 1.21295 * 119.99677 * 355.68734 * 13 12 11 15 15 C 1.50695 * 120.00473 * 175.68401 * 13 12 11 16 16 N 1.46904 * 109.47297 * 180.02562 * 15 13 12 17 17 C 1.46900 * 110.99919 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46894 * 179.97438 * 17 16 15 19 19 N 1.46903 * 109.47352 * 180.02562 * 18 17 16 20 20 C 1.39365 * 120.17621 * 0.44307 * 11 10 9 21 21 C 1.38360 * 120.47246 * 359.78351 * 20 11 10 22 22 C 1.38014 * 120.28760 * 0.02562 * 21 20 11 23 23 F 1.35098 * 120.09172 * 179.97438 * 22 21 20 24 24 H 0.97005 * 120.00444 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.14535 * 359.97438 * 10 9 7 26 26 H 0.97001 * 119.99807 * 215.44417 * 12 11 10 27 27 H 1.09001 * 109.47123 * 300.00133 * 15 13 12 28 28 H 1.08998 * 109.47255 * 60.00441 * 15 13 12 29 29 H 1.00896 * 110.99816 * 303.95740 * 16 15 13 30 30 H 1.08997 * 109.47228 * 299.99851 * 17 16 15 31 31 H 1.09000 * 109.47069 * 60.00328 * 17 16 15 32 32 H 1.09006 * 109.47211 * 300.00196 * 18 17 16 33 33 H 1.09001 * 109.47241 * 59.99821 * 18 17 16 34 34 H 1.00902 * 110.99565 * 56.04198 * 19 18 17 35 35 H 1.00897 * 111.00086 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.76322 * 179.76143 * 20 11 10 37 37 H 1.07999 * 119.85990 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7025 1.3465 -0.0006 5 1 1.8836 2.3965 -1.2126 6 1 1.8837 2.3965 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0854 -1.2132 0.0775 9 6 1.3049 -2.4336 -0.0937 10 6 0.0453 -2.5744 0.5158 11 6 -0.6346 -3.7726 0.4136 12 7 -1.8907 -3.9160 1.0151 13 6 -2.7431 -2.8727 1.0526 14 8 -2.3933 -1.7886 0.6359 15 6 -4.1306 -3.0530 1.6122 16 7 -4.8568 -1.7780 1.5410 17 6 -6.2170 -1.9161 2.0785 18 6 -6.9400 -0.5708 1.9883 19 7 -8.3000 -0.7087 2.5264 20 6 -0.0713 -4.8405 -0.2825 21 6 1.1694 -4.7117 -0.8810 22 6 1.8639 -3.5221 -0.7943 23 9 3.0754 -3.4008 -1.3797 24 1 -0.4851 0.8401 0.0004 25 1 -0.3896 -1.7486 1.0592 26 1 -2.1475 -4.7663 1.4049 27 1 -4.6619 -3.8063 1.0304 28 1 -4.0643 -3.3762 2.6510 29 1 -4.3514 -1.0469 2.0185 30 1 -6.7623 -2.6617 1.5000 31 1 -6.1655 -2.2313 3.1207 32 1 -6.3945 0.1745 2.5671 33 1 -6.9915 -0.2552 0.9462 34 1 -8.2808 -1.0621 3.4713 35 1 -8.7987 0.1670 2.4775 36 1 -0.6071 -5.7755 -0.3550 37 1 1.5968 -5.5458 -1.4176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219518521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:30 Heat of formation + Delta-G solvation = -79.591232 kcal Electronic energy + Delta-G solvation = -21449.672902 eV Core-core repulsion = 17946.979620 eV Total energy + Delta-G solvation = -3502.693282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.15984 -41.07198 -38.90041 -37.50179 -35.98213 -34.84789 -34.70207 -31.61147 -30.53553 -28.81161 -27.27138 -25.75123 -23.48762 -22.69157 -22.54965 -21.05025 -19.54500 -18.22222 -17.92408 -17.67043 -17.27609 -16.80082 -16.46333 -16.13234 -15.96894 -15.93752 -15.48738 -15.31106 -14.73168 -14.42181 -14.31285 -13.89397 -13.72614 -13.50500 -13.31308 -13.18589 -12.88767 -12.70998 -12.48212 -12.42298 -12.25836 -12.06915 -11.51172 -11.10741 -10.72902 -10.41723 -9.67665 -9.40162 -9.33915 -8.70519 -8.36061 -6.41943 0.70609 0.95941 1.34607 1.42559 1.50763 1.89201 2.20979 2.22956 2.78003 3.14879 3.50547 3.83020 3.96886 4.07395 4.09732 4.21187 4.37260 4.38937 4.49278 4.57782 4.67413 4.96227 5.00433 5.04775 5.10961 5.20658 5.30827 5.66509 5.80666 5.85232 5.96144 6.14405 6.15664 6.28474 6.30870 6.57460 6.59781 6.80045 6.90236 6.93976 7.55127 8.40440 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.016045 B = 0.004692 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.709993 B = 5966.794781 C = 7599.979502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.026 3.974 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.500 4.500 8 H 0.066 0.934 9 C 0.055 3.945 10 C -0.155 4.155 11 C 0.136 3.864 12 N -0.661 5.661 13 C 0.480 3.520 14 O -0.520 6.520 15 C 0.061 3.939 16 N -0.694 5.694 17 C 0.069 3.931 18 C 0.064 3.936 19 N -0.853 5.853 20 C -0.215 4.215 21 C -0.113 4.113 22 C -0.065 4.065 23 F -0.171 7.171 24 H 0.282 0.718 25 H 0.136 0.864 26 H 0.421 0.579 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.344 0.656 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.348 0.652 35 H 0.353 0.647 36 H 0.148 0.852 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.562 -5.071 7.700 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.189 4.189 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.084 0.916 9 C 0.052 3.948 10 C -0.177 4.177 11 C 0.042 3.958 12 N -0.309 5.309 13 C 0.267 3.733 14 O -0.393 6.393 15 C -0.071 4.071 16 N -0.327 5.327 17 C -0.060 4.060 18 C -0.067 4.067 19 N -0.385 5.385 20 C -0.236 4.236 21 C -0.133 4.133 22 C -0.086 4.086 23 F -0.151 7.151 24 H 0.093 0.907 25 H 0.154 0.846 26 H 0.259 0.741 27 H 0.141 0.859 28 H 0.105 0.895 29 H 0.163 0.837 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.872 -4.726 6.153 15.894 hybrid contribution 1.287 1.166 1.404 2.233 sum -12.586 -3.560 7.557 15.106 Atomic orbital electron populations 1.69987 1.07702 1.29637 1.34975 1.26740 0.95932 1.04028 0.92222 0.85147 0.79029 0.76512 0.78918 1.18589 1.19271 1.18588 1.19561 0.94485 0.91326 1.47684 0.91580 1.17947 0.93825 0.92186 0.90848 1.21568 0.95287 0.97582 1.03230 1.17812 0.85787 0.95176 0.97009 1.43267 1.13480 1.15693 1.58449 1.21591 0.87931 0.84279 0.79497 1.90959 1.77148 1.26237 1.44997 1.21727 0.89490 0.94048 1.01832 1.59977 1.03606 1.06546 1.62587 1.21874 0.87775 0.98144 0.98165 1.21614 0.88947 0.95858 1.00271 1.58595 1.15780 1.35665 1.28419 1.20432 0.97413 0.99553 1.06176 1.20674 0.95723 0.95359 1.01519 1.18406 0.84934 0.98597 1.06652 1.91228 1.43545 1.96977 1.83314 0.90734 0.84628 0.74119 0.85881 0.89468 0.83721 0.90032 0.93866 0.95595 0.91579 0.83899 0.83381 0.83478 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -45.22 10.55 21.82 0.23 -44.99 16 2 C 0.03 1.44 5.42 85.25 0.46 1.90 16 3 Si 0.98 42.00 29.56 68.60 2.03 44.03 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 7 C -0.50 -29.37 8.69 23.43 0.20 -29.16 16 8 H 0.07 3.86 7.84 -2.91 -0.02 3.84 16 9 C 0.06 3.19 5.55 -21.26 -0.12 3.07 16 10 C -0.15 -8.34 7.30 22.83 0.17 -8.17 16 11 C 0.14 5.93 6.29 38.09 0.24 6.17 16 12 N -0.66 -21.59 5.34 -303.61 -1.62 -23.21 16 13 C 0.48 16.66 7.70 87.66 0.68 17.34 16 14 O -0.52 -24.49 13.59 -3.07 -0.04 -24.53 16 15 C 0.06 1.37 6.17 85.55 0.53 1.90 16 16 N -0.69 -17.34 6.13 -517.94 -3.17 -20.51 16 17 C 0.07 1.27 5.95 86.30 0.51 1.79 16 18 C 0.06 1.18 7.05 86.30 0.61 1.79 16 19 N -0.85 -12.23 9.62 -186.71 -1.80 -14.03 16 20 C -0.21 -8.43 9.96 22.57 0.22 -8.20 16 21 C -0.11 -4.93 10.00 22.25 0.22 -4.71 16 22 C -0.07 -3.46 7.31 22.89 0.17 -3.30 16 23 F -0.17 -9.11 16.82 44.97 0.76 -8.36 16 24 H 0.28 14.90 8.30 -92.70 -0.77 14.14 16 25 H 0.14 7.90 4.35 -2.91 -0.01 7.89 16 26 H 0.42 9.28 8.82 -92.71 -0.82 8.47 16 27 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.34 9.53 8.43 -89.70 -0.76 8.77 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.35 3.82 8.99 -89.69 -0.81 3.01 16 35 H 0.35 4.09 9.08 -89.70 -0.81 3.27 16 36 H 0.15 4.37 8.06 -2.91 -0.02 4.34 16 37 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -73.68 321.08 -1.77 -75.44 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -2.04 Total: 35.74 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 3.89 Total: -19.59 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -6.36 Total: -102.74 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.04 Total: -24.53 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 0.76 Total: -8.36 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -73.68 -1.77 -75.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219518521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.148 kcal (2) G-P(sol) polarization free energy of solvation -73.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds