Wall clock time and date at job start Tue Mar 31 2020 05:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36042 * 116.99910 * 2 1 4 4 C 1.38546 * 120.04830 * 0.02562 * 3 2 1 5 5 C 1.38249 * 120.02439 * 179.97438 * 4 3 2 6 6 C 1.38451 * 120.11864 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.95160 * 179.97438 * 6 5 4 8 8 C 1.38423 * 120.09457 * 0.02562 * 6 5 4 9 9 C 1.38565 * 119.97786 * 359.70337 * 8 6 5 10 10 O 1.35997 * 120.06083 * 180.29769 * 9 8 6 11 11 C 1.42901 * 116.99830 * 354.68644 * 10 9 8 12 12 H 1.09004 * 110.88545 * 321.57489 * 11 10 9 13 13 C 1.55160 * 111.00245 * 197.65375 * 11 10 9 14 14 C 1.54322 * 102.94199 * 206.42485 * 13 11 10 15 15 N 1.47022 * 107.27284 * 22.19234 * 14 13 11 16 16 C 1.36934 * 125.65020 * 181.02552 * 15 14 13 17 17 H 1.07993 * 119.99935 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99747 * 0.04378 * 16 15 14 19 19 N 1.31615 * 120.00018 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47130 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47088 * 119.99629 * 20 18 16 23 23 H 1.48495 * 109.47239 * 239.99450 * 20 18 16 24 24 C 1.47422 * 108.70327 * 1.05963 * 15 14 13 25 25 H 1.09001 * 109.47161 * 60.00116 * 1 2 3 26 26 H 1.08994 * 109.47150 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47277 * 300.00111 * 1 2 3 28 28 H 1.07998 * 119.98595 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.93904 * 179.97438 * 5 4 3 30 30 H 1.08004 * 120.00970 * 180.02562 * 8 6 5 31 31 H 1.08999 * 110.71727 * 324.79081 * 13 11 10 32 32 H 1.08999 * 110.72176 * 88.05844 * 13 11 10 33 33 H 1.09002 * 109.88030 * 262.77156 * 14 13 11 34 34 H 1.09002 * 110.01078 * 141.68351 * 14 13 11 35 35 H 0.97001 * 120.00015 * 180.02562 * 19 18 16 36 36 H 1.08999 * 110.37157 * 217.03438 * 24 15 14 37 37 H 1.08998 * 110.46100 * 94.75721 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2930 2.3747 0.0005 5 6 1.9212 3.6063 0.0011 6 6 3.3037 3.6810 0.0016 7 9 3.9140 4.8863 0.0016 8 6 4.0614 2.5226 0.0011 9 6 3.4360 1.2862 0.0062 10 8 4.1788 0.1470 0.0118 11 6 5.5952 0.2956 -0.1058 12 1 5.8455 1.0935 -0.8051 13 6 6.2617 -1.0415 -0.5247 14 6 7.6890 -0.9102 0.0472 15 7 7.6349 0.0793 1.1333 16 6 8.6997 0.4973 1.8860 17 1 8.5554 1.2316 2.6646 18 6 9.9645 -0.0227 1.6480 19 7 10.1403 -0.9179 0.6993 20 14 11.4170 0.5469 2.6753 21 1 10.9574 1.5503 3.6688 22 1 12.0089 -0.6165 3.3836 23 1 12.4394 1.1599 1.7899 24 6 6.2441 0.5464 1.2783 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2145 2.3188 0.0005 29 1 1.3324 4.5116 0.0011 30 1 5.1398 2.5826 0.0019 31 1 5.7427 -1.8883 -0.0757 32 1 6.2884 -1.1357 -1.6102 33 1 8.3706 -0.5686 -0.7319 34 1 8.0243 -1.8711 0.4376 35 1 11.0241 -1.2815 0.5332 36 1 6.2240 1.6091 1.5197 37 1 5.7281 -0.0266 2.0486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225649095.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:00 Heat of formation + Delta-G solvation = -59.424769 kcal Electronic energy + Delta-G solvation = -21964.017260 eV Core-core repulsion = 18429.905710 eV Total energy + Delta-G solvation = -3534.111550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.82841 -40.55524 -38.81084 -37.02958 -36.01613 -32.34845 -30.51146 -29.87442 -29.12127 -27.35986 -27.25065 -24.62463 -22.83990 -22.35620 -20.39534 -20.11700 -18.72777 -17.69433 -17.27551 -16.69926 -16.20626 -16.00512 -15.40677 -14.97381 -14.76540 -14.71648 -14.39706 -14.19495 -13.79204 -13.32693 -13.00272 -12.55223 -12.40312 -12.09102 -12.02383 -11.87231 -11.42461 -11.23538 -10.98447 -10.96732 -10.83088 -10.34673 -10.26879 -10.05837 -9.89609 -9.72035 -8.81363 -8.64525 -7.79282 -6.90168 -5.75569 -3.10196 1.05750 1.21016 3.14737 3.28633 3.39109 3.44923 3.47269 3.48721 4.23577 4.47462 4.59522 4.76915 4.93788 4.98704 5.03166 5.13593 5.21427 5.31460 5.32539 5.51560 5.51910 5.60439 5.69129 5.92125 6.04305 6.06763 6.17422 6.33783 6.41800 6.55155 6.58129 6.64430 7.11750 7.50412 7.53853 7.64582 7.78295 8.19530 9.16612 9.76163 10.40419 11.36297 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022667 B = 0.004352 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.965414 B = 6432.918891 C = 7323.064054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.302 6.302 3 C 0.082 3.918 4 C -0.148 4.148 5 C -0.161 4.161 6 C 0.105 3.895 7 F -0.138 7.138 8 C -0.211 4.211 9 C 0.146 3.854 10 O -0.288 6.288 11 C 0.061 3.939 12 H 0.081 0.919 13 C -0.133 4.133 14 C 0.178 3.822 15 N -0.602 5.602 16 C -0.230 4.230 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.118 3.882 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.154 0.846 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.253 0.747 36 H 0.043 0.957 37 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.420 4.864 -3.669 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.036 3.964 4 C -0.167 4.167 5 C -0.180 4.180 6 C 0.085 3.915 7 F -0.117 7.117 8 C -0.230 4.230 9 C 0.099 3.901 10 O -0.200 6.200 11 C 0.004 3.996 12 H 0.099 0.901 13 C -0.171 4.171 14 C 0.053 3.947 15 N -0.330 5.330 16 C -0.358 4.358 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.744 3.256 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.009 4.009 25 H 0.072 0.928 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.172 0.828 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -19.129 4.454 -3.637 19.975 hybrid contribution 0.813 0.821 0.510 1.263 sum -18.316 5.275 -3.128 19.315 Atomic orbital electron populations 1.23064 0.78827 1.04007 1.01017 1.86234 1.20727 1.25484 1.89059 1.18268 0.89174 0.85386 1.03530 1.20808 0.99990 0.90582 1.05311 1.20732 0.92444 0.98578 1.06245 1.17265 0.90510 0.80130 1.03572 1.91498 1.83585 1.42610 1.93986 1.21238 1.02035 0.90307 1.09457 1.17996 0.88213 0.86207 0.97674 1.86246 1.19920 1.27103 1.86715 1.23955 0.75866 1.00427 0.99312 0.90135 1.23010 0.98492 0.94947 1.00648 1.21224 0.88888 0.94066 0.90516 1.44343 1.01862 1.47382 1.39395 1.19115 0.85555 1.19552 1.11624 0.90219 1.24814 0.97518 0.99029 0.98908 1.69951 1.21719 1.31970 1.33270 0.86012 0.82486 0.77810 0.79263 1.20439 1.21655 1.21672 1.21986 0.87493 0.97899 0.93548 0.92826 0.88211 0.92774 0.84088 0.84587 0.82834 0.90964 0.91247 0.93020 0.93105 0.93666 0.93893 0.95075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -4.02 10.28 -34.42 -0.35 -4.37 16 3 C 0.08 1.13 6.70 -39.14 -0.26 0.87 16 4 C -0.15 -1.60 9.04 -39.46 -0.36 -1.96 16 5 C -0.16 -1.81 10.02 -39.50 -0.40 -2.21 16 6 C 0.10 1.45 7.30 -39.43 -0.29 1.16 16 7 F -0.14 -1.99 17.26 2.25 0.04 -1.95 16 8 C -0.21 -3.21 8.70 -39.39 -0.34 -3.55 16 9 C 0.15 2.33 6.65 -39.13 -0.26 2.07 16 10 O -0.29 -5.15 9.74 -34.28 -0.33 -5.49 16 11 C 0.06 1.14 2.82 -24.58 -0.07 1.07 16 12 H 0.08 1.44 6.62 -51.93 -0.34 1.10 16 13 C -0.13 -2.56 6.69 -24.90 -0.17 -2.72 16 14 C 0.18 4.31 5.38 -3.06 -0.02 4.29 16 15 N -0.60 -15.53 3.39 -170.07 -0.58 -16.11 16 16 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -26.91 10.31 55.49 0.57 -26.34 16 20 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 C 0.12 2.53 6.60 -2.53 -0.02 2.51 16 25 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.14 1.05 6.29 -52.49 -0.33 0.72 16 29 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.15 2.44 5.30 -52.48 -0.28 2.16 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 1.36 7.38 -51.93 -0.38 0.97 16 34 H 0.05 1.35 7.50 -51.93 -0.39 0.96 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.04 0.89 7.24 -51.93 -0.38 0.51 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -31.30 309.74 -7.00 -38.30 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -4.56 Total: -1.63 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.43 Total: -4.16 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.01 Total: -42.45 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.69 Total: -9.86 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.30 -7.00 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225649095.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.123 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds