Wall clock time and date at job start Tue Mar 31 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36042 * 116.99910 * 2 1 4 4 C 1.38546 * 120.04830 * 0.02562 * 3 2 1 5 5 C 1.38249 * 120.02439 * 179.97438 * 4 3 2 6 6 C 1.38451 * 120.11864 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.95160 * 179.97438 * 6 5 4 8 8 C 1.38423 * 120.09457 * 0.02562 * 6 5 4 9 9 C 1.38565 * 119.97786 * 359.70337 * 8 6 5 10 10 O 1.35997 * 120.06083 * 180.29769 * 9 8 6 11 11 C 1.42901 * 116.99830 * 354.68644 * 10 9 8 12 12 H 1.09004 * 110.88545 * 321.57489 * 11 10 9 13 13 C 1.55160 * 111.00245 * 197.65375 * 11 10 9 14 14 C 1.54322 * 102.94199 * 206.42485 * 13 11 10 15 15 N 1.47022 * 107.27284 * 22.19234 * 14 13 11 16 16 C 1.36934 * 125.65020 * 181.02552 * 15 14 13 17 17 H 1.07993 * 119.99935 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99747 * 0.04378 * 16 15 14 19 19 N 1.31615 * 120.00018 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47130 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47088 * 119.99629 * 20 18 16 23 23 H 1.48495 * 109.47239 * 239.99450 * 20 18 16 24 24 C 1.47422 * 108.70327 * 1.05963 * 15 14 13 25 25 H 1.09001 * 109.47161 * 60.00116 * 1 2 3 26 26 H 1.08994 * 109.47150 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47277 * 300.00111 * 1 2 3 28 28 H 1.07998 * 119.98595 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.93904 * 179.97438 * 5 4 3 30 30 H 1.08004 * 120.00970 * 180.02562 * 8 6 5 31 31 H 1.08999 * 110.71727 * 324.79081 * 13 11 10 32 32 H 1.08999 * 110.72176 * 88.05844 * 13 11 10 33 33 H 1.09002 * 109.88030 * 262.77156 * 14 13 11 34 34 H 1.09002 * 110.01078 * 141.68351 * 14 13 11 35 35 H 0.97001 * 120.00015 * 180.02562 * 19 18 16 36 36 H 1.08999 * 110.37157 * 217.03438 * 24 15 14 37 37 H 1.08998 * 110.46100 * 94.75721 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2930 2.3747 0.0005 5 6 1.9212 3.6063 0.0011 6 6 3.3037 3.6810 0.0016 7 9 3.9140 4.8863 0.0016 8 6 4.0614 2.5226 0.0011 9 6 3.4360 1.2862 0.0062 10 8 4.1788 0.1470 0.0118 11 6 5.5952 0.2956 -0.1058 12 1 5.8455 1.0935 -0.8051 13 6 6.2617 -1.0415 -0.5247 14 6 7.6890 -0.9102 0.0472 15 7 7.6349 0.0793 1.1333 16 6 8.6997 0.4973 1.8860 17 1 8.5554 1.2316 2.6646 18 6 9.9645 -0.0227 1.6480 19 7 10.1403 -0.9179 0.6993 20 14 11.4170 0.5469 2.6753 21 1 10.9574 1.5503 3.6688 22 1 12.0089 -0.6165 3.3836 23 1 12.4394 1.1599 1.7899 24 6 6.2441 0.5464 1.2783 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2145 2.3188 0.0005 29 1 1.3324 4.5116 0.0011 30 1 5.1398 2.5826 0.0019 31 1 5.7427 -1.8883 -0.0757 32 1 6.2884 -1.1357 -1.6102 33 1 8.3706 -0.5686 -0.7319 34 1 8.0243 -1.8711 0.4376 35 1 11.0241 -1.2815 0.5332 36 1 6.2240 1.6091 1.5197 37 1 5.7281 -0.0266 2.0486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225649095.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:59 Heat of formation + Delta-G solvation = -78.264524 kcal Electronic energy + Delta-G solvation = -21964.834213 eV Core-core repulsion = 18429.905710 eV Total energy + Delta-G solvation = -3534.928503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.89881 -41.65854 -40.05739 -38.34323 -37.40184 -34.33236 -31.70418 -31.19010 -30.60039 -29.05202 -27.97786 -26.57210 -24.04477 -23.39881 -22.16027 -21.71609 -19.86590 -19.09709 -18.63314 -18.02693 -17.39970 -17.01387 -16.74130 -16.41233 -16.30624 -15.83984 -15.56481 -15.48226 -15.27145 -14.90838 -14.20328 -13.95264 -13.82014 -13.72178 -13.26575 -12.99147 -12.89726 -12.78413 -12.65198 -12.24335 -12.05871 -12.00814 -11.92429 -11.81108 -11.64048 -11.50765 -10.76213 -9.87190 -9.00599 -8.83710 -7.89986 -5.27644 0.04793 0.18729 1.45664 1.46649 1.57238 1.99989 2.32164 2.46312 2.48826 3.20827 3.29171 3.55059 3.62864 3.69607 3.87252 3.88946 3.99276 4.05898 4.13319 4.44216 4.49496 4.50643 4.55656 4.68846 4.75099 4.81106 4.88902 4.93944 5.00137 5.08359 5.10854 5.39096 5.55735 5.60964 5.67362 6.04578 6.14413 6.54050 7.03764 7.67887 8.31858 9.20679 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022667 B = 0.004352 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.965414 B = 6432.918891 C = 7323.064054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.081 3.919 4 C -0.133 4.133 5 C -0.140 4.140 6 C 0.085 3.915 7 F -0.146 7.146 8 C -0.220 4.220 9 C 0.109 3.891 10 O -0.298 6.298 11 C 0.081 3.919 12 H 0.087 0.913 13 C -0.120 4.120 14 C 0.186 3.814 15 N -0.623 5.623 16 C -0.249 4.249 17 H 0.082 0.918 18 C -0.060 4.060 19 N -0.949 5.949 20 Si 0.982 3.018 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.117 3.883 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.184 0.816 29 H 0.171 0.829 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.024 0.976 34 H 0.018 0.982 35 H 0.250 0.750 36 H 0.046 0.954 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.187 6.090 -3.655 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.244 6.244 3 C 0.035 3.965 4 C -0.151 4.151 5 C -0.159 4.159 6 C 0.065 3.935 7 F -0.124 7.124 8 C -0.239 4.239 9 C 0.063 3.937 10 O -0.211 6.211 11 C 0.024 3.976 12 H 0.105 0.895 13 C -0.158 4.158 14 C 0.061 3.939 15 N -0.351 5.351 16 C -0.378 4.378 17 H 0.100 0.900 18 C -0.254 4.254 19 N -0.597 5.597 20 Si 0.810 3.190 21 H -0.191 1.191 22 H -0.217 1.217 23 H -0.216 1.216 24 C -0.008 4.008 25 H 0.092 0.908 26 H 0.132 0.868 27 H 0.090 0.910 28 H 0.201 0.799 29 H 0.189 0.811 30 H 0.154 0.846 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.043 0.957 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -21.945 5.696 -3.618 22.959 hybrid contribution 1.483 0.472 0.520 1.641 sum -20.462 6.167 -3.098 21.594 Atomic orbital electron populations 1.23439 0.76025 1.05719 1.02807 1.86204 1.23702 1.25558 1.88904 1.18486 0.88525 0.86704 1.02755 1.21257 1.01808 0.89064 1.03008 1.21156 0.91321 1.00213 1.03192 1.17480 0.91662 0.79391 1.04954 1.91478 1.83951 1.42811 1.94191 1.21142 1.01443 0.91076 1.10258 1.18285 0.89229 0.85582 1.00576 1.86195 1.18787 1.28444 1.87688 1.23533 0.76919 0.99888 0.97230 0.89542 1.22832 0.95262 0.95673 1.01998 1.20967 0.91512 0.91983 0.89429 1.44618 1.03101 1.47863 1.39480 1.19481 0.86650 1.19614 1.12036 0.90006 1.25671 1.00101 0.99343 1.00242 1.70157 1.21946 1.32986 1.34645 0.84967 0.78850 0.77400 0.77819 1.19124 1.21658 1.21558 1.22051 0.85702 0.97723 0.95372 0.90778 0.86846 0.91015 0.79885 0.81139 0.84552 0.90308 0.88616 0.95736 0.96370 0.94081 0.93530 0.95744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -8.03 10.28 -80.12 -0.82 -8.85 16 3 C 0.08 2.05 6.70 22.56 0.15 2.20 16 4 C -0.13 -2.33 9.04 22.35 0.20 -2.13 16 5 C -0.14 -2.64 10.02 22.32 0.22 -2.41 16 6 C 0.08 2.21 7.30 22.36 0.16 2.37 16 7 F -0.15 -4.05 17.26 44.97 0.78 -3.27 16 8 C -0.22 -6.66 8.70 22.39 0.19 -6.46 16 9 C 0.11 3.41 6.65 22.56 0.15 3.56 16 10 O -0.30 -10.66 9.74 -79.61 -0.78 -11.44 16 11 C 0.08 3.08 2.82 31.99 0.09 3.17 16 12 H 0.09 3.16 6.62 -2.39 -0.02 3.14 16 13 C -0.12 -4.65 6.69 31.78 0.21 -4.44 16 14 C 0.19 9.39 5.38 86.73 0.47 9.86 16 15 N -0.62 -33.24 3.39 -691.99 -2.35 -35.59 16 16 C -0.25 -14.33 10.28 84.03 0.86 -13.47 16 17 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 18 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 19 N -0.95 -57.25 10.31 21.65 0.22 -57.03 16 20 Si 0.98 46.18 29.55 68.60 2.03 48.21 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 C 0.12 5.19 6.60 86.86 0.57 5.76 16 25 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 26 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 28 H 0.18 1.63 6.29 -2.91 -0.02 1.61 16 29 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.14 4.49 5.30 -2.91 -0.02 4.47 16 31 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 33 H 0.02 1.35 7.38 -2.39 -0.02 1.33 16 34 H 0.02 1.02 7.50 -2.39 -0.02 1.00 16 35 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.05 2.00 7.24 -2.39 -0.02 1.98 16 37 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -70.19 309.74 5.03 -65.15 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.09 Total: 6.52 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 4.87 Total: -3.69 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -2.13 Total: -92.62 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.60 Total: -20.29 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.78 Total: -3.27 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -70.19 5.03 -65.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225649095.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.114 kcal (2) G-P(sol) polarization free energy of solvation -70.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds