Wall clock time and date at job start Tue Mar 31 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46942 * 2 1 4 4 N 1.32540 * 120.42977 * 269.98254 * 3 2 1 5 5 C 1.31729 * 120.98187 * 180.02562 * 4 3 2 6 6 N 1.31816 * 121.86507 * 359.72220 * 5 4 3 7 7 C 1.32745 * 120.74072 * 0.56519 * 6 5 4 8 8 O 1.35572 * 120.52006 * 179.72178 * 7 6 5 9 9 C 1.42895 * 117.00383 * 359.72395 * 8 7 6 10 10 C 1.53514 * 114.17121 * 210.00206 * 9 8 7 11 11 N 1.47483 * 87.92777 * 220.32774 * 10 9 8 12 12 C 1.46903 * 110.99717 * 138.70421 * 11 10 9 13 13 C 1.50694 * 109.47066 * 169.99804 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47480 * 87.83900 * 27.00973 * 11 10 9 22 22 C 1.38366 * 120.42165 * 90.00960 * 3 2 1 23 23 F 1.35099 * 120.84484 * 359.94846 * 22 3 2 24 24 H 1.08996 * 109.47668 * 59.99157 * 1 2 3 25 25 H 1.08995 * 109.46835 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46413 * 299.99082 * 1 2 3 27 27 H 1.09005 * 109.46918 * 240.01059 * 2 1 3 28 28 H 1.08996 * 109.47668 * 120.00843 * 2 1 3 29 29 H 1.08003 * 119.06336 * 179.97438 * 5 4 3 30 30 H 1.09011 * 113.25486 * 342.95289 * 9 8 7 31 31 H 1.09000 * 113.47331 * 105.56452 * 10 9 8 32 32 H 1.08997 * 113.47627 * 335.09577 * 10 9 8 33 33 H 1.09007 * 109.47052 * 49.99488 * 12 11 10 34 34 H 1.09003 * 109.46808 * 290.00181 * 12 11 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 36 36 H 1.09004 * 113.47132 * 87.75237 * 21 11 10 37 37 H 1.09000 * 113.47538 * 218.21976 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2564 2.0536 -1.1428 5 6 2.6959 3.2954 -1.1555 6 7 2.9265 3.9634 -0.0428 7 6 2.7316 3.3965 1.1417 8 8 2.9756 4.0859 2.2833 9 6 3.4501 5.4264 2.1429 10 6 4.3587 5.8947 3.2883 11 7 3.6746 7.1998 3.2259 12 6 3.4138 7.7223 4.5738 13 6 2.9433 9.1507 4.4765 14 1 2.8480 9.6232 3.5101 15 6 2.6355 9.8546 5.6215 16 7 2.7521 9.2794 6.7984 17 14 2.0531 11.6254 5.5008 18 1 3.2245 12.5365 5.5537 19 1 1.3300 11.8224 4.2188 20 1 1.1415 11.9248 6.6343 21 6 2.4940 6.4927 2.6956 22 6 2.2660 2.0813 1.1932 23 9 2.0488 1.4693 2.3778 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 2.8684 3.7812 -2.1046 30 1 3.8385 5.6435 1.1478 31 1 5.4126 5.9434 3.0142 32 1 4.1897 5.3600 4.2229 33 1 4.3299 7.6808 5.1632 34 1 2.6445 7.1183 5.0551 35 1 2.5359 9.7748 7.6038 36 1 1.8274 6.1176 3.4722 37 1 1.9676 7.0482 1.9194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226064657.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:36 Heat of formation + Delta-G solvation = 3.732859 kcal Electronic energy + Delta-G solvation = -21366.134701 eV Core-core repulsion = 17867.054623 eV Total energy + Delta-G solvation = -3499.080078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.11119 -41.41920 -39.87063 -37.65558 -35.13738 -32.95645 -32.33450 -30.82419 -29.27307 -26.00139 -25.52892 -24.91225 -24.44751 -22.61662 -21.43648 -19.83163 -18.65556 -18.42827 -17.61676 -16.75121 -16.42462 -15.97484 -15.33429 -15.10752 -14.64352 -14.53068 -14.29239 -14.20334 -14.07859 -13.53364 -13.28391 -12.73610 -12.68845 -12.25110 -12.14533 -12.03513 -11.77666 -11.48481 -11.29277 -11.03842 -10.75025 -10.57868 -10.32049 -10.01155 -9.86821 -9.62718 -9.29688 -8.98389 -8.48234 -8.06537 -6.07735 -4.09498 0.44452 0.72176 2.54590 3.30400 3.31269 3.36012 3.40398 3.58749 3.71403 3.73717 4.30042 4.39349 4.51416 4.63534 4.77344 4.86781 4.88835 5.12460 5.22985 5.27647 5.35766 5.49571 5.58143 5.61948 5.81535 5.88558 5.93277 6.05496 6.17588 6.21734 6.44524 6.51700 7.03262 7.10290 7.55402 7.69126 7.76524 8.01475 8.36231 8.97610 9.54759 11.03402 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.033618 B = 0.003169 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.688345 B = 8833.455750 C = 9015.496418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 C 0.177 3.823 4 N -0.524 5.524 5 C 0.331 3.669 6 N -0.554 5.554 7 C 0.354 3.646 8 O -0.278 6.278 9 C 0.045 3.955 10 C 0.000 4.000 11 N -0.456 5.456 12 C 0.161 3.839 13 C -0.507 4.507 14 H 0.065 0.935 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.901 3.099 18 H -0.279 1.279 19 H -0.273 1.273 20 H -0.287 1.287 21 C 0.002 3.998 22 C -0.028 4.028 23 F -0.113 7.113 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.208 0.792 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.007 0.993 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -18.392 -14.725 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C 0.033 3.967 4 N -0.242 5.242 5 C 0.043 3.957 6 N -0.284 5.284 7 C 0.165 3.835 8 O -0.180 6.180 9 C -0.011 4.011 10 C -0.130 4.130 11 N -0.181 5.181 12 C 0.035 3.965 13 C -0.546 4.546 14 H 0.083 0.917 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.729 3.271 18 H -0.205 1.205 19 H -0.198 1.198 20 H -0.213 1.213 21 C -0.127 4.127 22 C -0.053 4.053 23 F -0.092 7.092 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.225 0.775 30 H 0.147 0.853 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.024 0.976 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.319 -17.375 -15.295 23.186 hybrid contribution -0.737 0.196 1.609 1.781 sum -2.057 -17.180 -13.685 22.060 Atomic orbital electron populations 1.21704 0.93092 1.02806 1.02723 1.20552 0.97299 0.88811 1.04728 1.21765 0.91528 0.97435 0.85997 1.68327 1.16816 1.10957 1.28147 1.24816 0.88364 0.86493 0.95986 1.68193 1.23257 1.39039 0.97877 1.20368 0.88263 0.87868 0.86976 1.86449 1.77524 1.28979 1.25058 1.24796 0.97962 0.76273 1.02105 1.24145 0.99415 0.92571 0.96833 1.69064 1.09200 1.14437 1.25412 1.20309 0.96683 0.96256 0.83270 1.21073 1.43897 0.96449 0.93155 0.91721 1.25016 0.95750 0.98734 0.95213 1.69957 1.49158 1.37165 0.97583 0.86440 0.78616 0.84407 0.77628 1.20543 1.19779 1.21254 1.24243 0.95379 0.92911 1.00203 1.18350 1.11766 0.91380 0.83826 1.91535 1.92757 1.81900 1.43014 0.91892 0.91187 0.92295 0.88635 0.89263 0.77549 0.85287 0.89468 0.90877 0.94949 0.97555 0.92815 0.90820 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.08 -0.59 6.11 -27.88 -0.17 -0.76 16 3 C 0.18 1.91 6.08 -82.24 -0.50 1.41 16 4 N -0.52 -5.61 10.37 -10.82 -0.11 -5.72 16 5 C 0.33 3.41 12.28 -92.19 -1.13 2.28 16 6 N -0.55 -7.22 8.75 -14.59 -0.13 -7.35 16 7 C 0.35 5.11 7.54 -16.64 -0.13 4.99 16 8 O -0.28 -4.55 10.10 -18.41 -0.19 -4.73 16 9 C 0.04 0.74 4.55 -26.20 -0.12 0.62 16 10 C 0.00 -0.01 7.52 -7.53 -0.06 -0.07 16 11 N -0.46 -9.99 6.32 -246.08 -1.55 -11.55 16 12 C 0.16 4.22 4.57 -4.98 -0.02 4.19 16 13 C -0.51 -14.50 9.39 -34.44 -0.32 -14.83 16 14 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 17 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 C 0.00 0.04 7.55 -7.54 -0.06 -0.02 16 22 C -0.03 -0.36 7.32 -39.02 -0.29 -0.65 16 23 F -0.11 -1.52 16.50 2.25 0.04 -1.48 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.63 7.71 -51.93 -0.40 0.23 16 29 H 0.21 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.13 2.02 6.91 -51.92 -0.36 1.66 16 31 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 33 H 0.03 0.90 8.08 -51.92 -0.42 0.48 16 34 H 0.01 0.18 7.30 -51.93 -0.38 -0.20 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.07 1.49 7.42 -51.93 -0.39 1.10 16 37 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -31.40 322.81 -8.74 -40.14 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.86 Total: -2.84 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.52 Total: -2.01 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -1.06 Total: -50.73 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.19 Total: -4.73 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.40 -8.74 -40.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226064657.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.877 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds